Click here to switch to the map view.

The map label for this gene is ybbD [H]

Identifier: 116327859

GI number: 116327859

Start: 1342555

End: 1344294

Strand: Reverse

Name: ybbD [H]

Synonym: LBL_1137

Alternate gene names: 116327859

Gene position: 1344294-1342555 (Counterclockwise)

Preceding gene: 116327864

Following gene: 116327858

Centisome position: 37.19

GC content: 41.38

Gene sequence:

>1740_bases
ATGATCCGACGTTTTCTAATTGTGTTCCTGCTCCTTATGAGTTTTCTAACCGTACTCTACTACGTCAGTTTCTACCAACA
AGAACTACAAGCCGAAGGTTTAGATAAATATCTAGAATCACAAGCAAAAGAGATCGTAGATAAGATGAGTCCTGAAGAAT
TAACGGGGCAAGTAATCCATGTCGCAATTCCCGGTAAAACCTTGGATGAAACCGCTGCAAAGGAAATAGAAGAGATTCTT
CCAGGAGGAATCATTCTTTTCGGAACAAATCTCGGCACCAAAGAAGAAATTTTAAAACTCAATCTCGAACTACAAAAGAA
GAGTATGGAATCTTCCAAATTACCCCTTTTGATTTCAATCGATCAAGAAGGAGGAAGAGTTCTCCGAGTTAAAGACGGAG
TCACTCAATTTCCGGGGGCAATGGCGCTCGGCCAAACCAAAAACGCCGACTATGCGTATAAAGTAGGCTTTGTAACTTCT
TATCAACTTCGAAAACTCGGATTTAATTTTGTTTTTGCTCCCGATTTGGATATCAATAACAATCCGGATAATCCAGTCAT
CAACACTCGTTCGATGGGAAGTACTCCCGAAACGGTTTCCATTTCCGGAATCGGATACGAAAAGGGAGCAAGAATCGGAG
GAGCGATTCCTACGATCAAACACTTTCCCGGACACGGGGACACAAACGTAGACAGTCATTTAGGCCTTCCCAAAATCGAC
AAAACTTTGGAAGAACTGGAAAGAATGGAACTCATTCCATTCCAGGAATCCATACAACAAGGTGCCGAAGTCGTGATGAG
CGCGCATATCGTATATCCTAAATTGGATCCGGATTTTCCCGCGACCCTTTCCTCCAAAATTCTCACCGGAATCTTAAGAG
ATAAAATGGGATTCAAAGGTGTCGTCATCACGGATGCGATGGAGATGAACGCGATCGATGTACACTACAAAGACCGCGAC
CCAGGAGTACTTGCAATACTGGCTGGAGCGGATATCCTTCTGATGACTAGCTGGGGGAAAACGACCCGCAATATGAAGAA
TCAGATATCAACCGCATATAAAAAAGGAACCTTTCAAAAAGGAGAAAAAGATCTCCTAAAAGAAGCCGTATACAGACAGA
TTCTTTTAAAACTAAAACACGGAATCGTCTACGAATTCTCCTCTAAAAAATCCGAACCAAAAGAAAAACTTTCGGAGTTG
GAGCAAAAAGAAATCGCGTTCTTTCAAGATCAGATTGCGGAAAGAGAAAAAAACTTTTCAGAAATTTTTTCACCAACTCT
CAATTCGGAAATATCAAGGGCATCCATCGTCGCATTTCCGTCTTCTTTCAATCCGATTACCGTAAAAACGGAAGAAACGA
TCTTCGCCGTTCGAGGAAAAGAATTCGAAACCTTACTCTCGGAAAAAAATATTCAAAACGTAAACTCCGGAAAAATTTCG
AGCTTGGTCAAAAACAATAAATTCAAACGGATTGTAGTAACTACGTTCAGTCAATTGGAATTGGATTTAGCGGCCGGACT
AGCAAAACGTTATCCGAAAACGGAAATCGTGGATCTTCACTATGGGACTCCATTCTTAAAATTGAATATGCTGCCGAATT
TGAAAATCTTATTCTCTTTTTCTCCGACGTTGGAATCTAAAAAAGCGCTTTTGTATTCCGTTTTGGAAAGGACTTCCCCG
ATTCCGGTTGTAGATCTGATCTTAAAGGGTTCCGACGAAAAGACCGTCTCCCAGCCATGA

Upstream 100 bases:

>100_bases
AACTGGAAATAAAAATTAAGATCCTAAAAAGAAACATAACAATCGTTTGCTCCCGGAATTTGTTTTTACAGAATTCAAGG
TTTTCCTATTCTGTCAAACT

Downstream 100 bases:

>100_bases
AAATTGATTCCGGAAATCCTGTCACAAAGACTGGTTTTCCGGGAGTTTACGTCCATTATCCCTATTGCATTCAAAAATGT
GAATATTGTGATTTTTATTC

Product: Beta-glucosidase-related glycosidase

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 579; Mature: 579

Protein sequence:

>579_residues
MIRRFLIVFLLLMSFLTVLYYVSFYQQELQAEGLDKYLESQAKEIVDKMSPEELTGQVIHVAIPGKTLDETAAKEIEEIL
PGGIILFGTNLGTKEEILKLNLELQKKSMESSKLPLLISIDQEGGRVLRVKDGVTQFPGAMALGQTKNADYAYKVGFVTS
YQLRKLGFNFVFAPDLDINNNPDNPVINTRSMGSTPETVSISGIGYEKGARIGGAIPTIKHFPGHGDTNVDSHLGLPKID
KTLEELERMELIPFQESIQQGAEVVMSAHIVYPKLDPDFPATLSSKILTGILRDKMGFKGVVITDAMEMNAIDVHYKDRD
PGVLAILAGADILLMTSWGKTTRNMKNQISTAYKKGTFQKGEKDLLKEAVYRQILLKLKHGIVYEFSSKKSEPKEKLSEL
EQKEIAFFQDQIAEREKNFSEIFSPTLNSEISRASIVAFPSSFNPITVKTEETIFAVRGKEFETLLSEKNIQNVNSGKIS
SLVKNNKFKRIVVTTFSQLELDLAAGLAKRYPKTEIVDLHYGTPFLKLNMLPNLKILFSFSPTLESKKALLYSVLERTSP
IPVVDLILKGSDEKTVSQP

Sequences:

>Translated_579_residues
MIRRFLIVFLLLMSFLTVLYYVSFYQQELQAEGLDKYLESQAKEIVDKMSPEELTGQVIHVAIPGKTLDETAAKEIEEIL
PGGIILFGTNLGTKEEILKLNLELQKKSMESSKLPLLISIDQEGGRVLRVKDGVTQFPGAMALGQTKNADYAYKVGFVTS
YQLRKLGFNFVFAPDLDINNNPDNPVINTRSMGSTPETVSISGIGYEKGARIGGAIPTIKHFPGHGDTNVDSHLGLPKID
KTLEELERMELIPFQESIQQGAEVVMSAHIVYPKLDPDFPATLSSKILTGILRDKMGFKGVVITDAMEMNAIDVHYKDRD
PGVLAILAGADILLMTSWGKTTRNMKNQISTAYKKGTFQKGEKDLLKEAVYRQILLKLKHGIVYEFSSKKSEPKEKLSEL
EQKEIAFFQDQIAEREKNFSEIFSPTLNSEISRASIVAFPSSFNPITVKTEETIFAVRGKEFETLLSEKNIQNVNSGKIS
SLVKNNKFKRIVVTTFSQLELDLAAGLAKRYPKTEIVDLHYGTPFLKLNMLPNLKILFSFSPTLESKKALLYSVLERTSP
IPVVDLILKGSDEKTVSQP
>Mature_579_residues
MIRRFLIVFLLLMSFLTVLYYVSFYQQELQAEGLDKYLESQAKEIVDKMSPEELTGQVIHVAIPGKTLDETAAKEIEEIL
PGGIILFGTNLGTKEEILKLNLELQKKSMESSKLPLLISIDQEGGRVLRVKDGVTQFPGAMALGQTKNADYAYKVGFVTS
YQLRKLGFNFVFAPDLDINNNPDNPVINTRSMGSTPETVSISGIGYEKGARIGGAIPTIKHFPGHGDTNVDSHLGLPKID
KTLEELERMELIPFQESIQQGAEVVMSAHIVYPKLDPDFPATLSSKILTGILRDKMGFKGVVITDAMEMNAIDVHYKDRD
PGVLAILAGADILLMTSWGKTTRNMKNQISTAYKKGTFQKGEKDLLKEAVYRQILLKLKHGIVYEFSSKKSEPKEKLSEL
EQKEIAFFQDQIAEREKNFSEIFSPTLNSEISRASIVAFPSSFNPITVKTEETIFAVRGKEFETLLSEKNIQNVNSGKIS
SLVKNNKFKRIVVTTFSQLELDLAAGLAKRYPKTEIVDLHYGTPFLKLNMLPNLKILFSFSPTLESKKALLYSVLERTSP
IPVVDLILKGSDEKTVSQP

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=331, Percent_Identity=27.7945619335347, Blast_Score=126, Evalue=5e-30,
Organism=Escherichia coli, GI1788453, Length=308, Percent_Identity=25, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: 3.2.1.52

Molecular weight: Translated: 64614; Mature: 64614

Theoretical pI: Translated: 7.32; Mature: 7.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRRFLIVFLLLMSFLTVLYYVSFYQQELQAEGLDKYLESQAKEIVDKMSPEELTGQVIH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEE
VAIPGKTLDETAAKEIEEILPGGIILFGTNLGTKEEILKLNLELQKKSMESSKLPLLISI
EEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEE
DQEGGRVLRVKDGVTQFPGAMALGQTKNADYAYKVGFVTSYQLRKLGFNFVFAPDLDINN
ECCCCEEEEEECCCCCCCCCEECCCCCCCCEEEEEECEEHHHHHHCCCCEEEECCCCCCC
NPDNPVINTRSMGSTPETVSISGIGYEKGARIGGAIPTIKHFPGHGDTNVDSHLGLPKID
CCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHH
KTLEELERMELIPFQESIQQGAEVVMSAHIVYPKLDPDFPATLSSKILTGILRDKMGFKG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCE
VVITDAMEMNAIDVHYKDRDPGVLAILAGADILLMTSWGKTTRNMKNQISTAYKKGTFQK
EEEECCEECCEEEEEECCCCCCEEEEEECCCEEEEECCCCHHHHHHHHHHHHHHCCCCCC
GEKDLLKEAVYRQILLKLKHGIVYEFSSKKSEPKEKLSELEQKEIAFFQDQIAEREKNFS
CHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHH
EIFSPTLNSEISRASIVAFPSSFNPITVKTEETIFAVRGKEFETLLSEKNIQNVNSGKIS
HHHCCHHCCCCCCEEEEEECCCCCCEEEEECCEEEEECCCHHHHHHHHCCCCCCCCHHHH
SLVKNNKFKRIVVTTFSQLELDLAAGLAKRYPKTEIVDLHYGTPFLKLNMLPNLKILFSF
HHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCCEEEEEEE
SPTLESKKALLYSVLERTSPIPVVDLILKGSDEKTVSQP
CCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCC
>Mature Secondary Structure
MIRRFLIVFLLLMSFLTVLYYVSFYQQELQAEGLDKYLESQAKEIVDKMSPEELTGQVIH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEE
VAIPGKTLDETAAKEIEEILPGGIILFGTNLGTKEEILKLNLELQKKSMESSKLPLLISI
EEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEE
DQEGGRVLRVKDGVTQFPGAMALGQTKNADYAYKVGFVTSYQLRKLGFNFVFAPDLDINN
ECCCCEEEEEECCCCCCCCCEECCCCCCCCEEEEEECEEHHHHHHCCCCEEEECCCCCCC
NPDNPVINTRSMGSTPETVSISGIGYEKGARIGGAIPTIKHFPGHGDTNVDSHLGLPKID
CCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHH
KTLEELERMELIPFQESIQQGAEVVMSAHIVYPKLDPDFPATLSSKILTGILRDKMGFKG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCE
VVITDAMEMNAIDVHYKDRDPGVLAILAGADILLMTSWGKTTRNMKNQISTAYKKGTFQK
EEEECCEECCEEEEEECCCCCCEEEEEECCCEEEEECCCCHHHHHHHHHHHHHHCCCCCC
GEKDLLKEAVYRQILLKLKHGIVYEFSSKKSEPKEKLSELEQKEIAFFQDQIAEREKNFS
CHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHH
EIFSPTLNSEISRASIVAFPSSFNPITVKTEETIFAVRGKEFETLLSEKNIQNVNSGKIS
HHHCCHHCCCCCCEEEEEECCCCCCEEEEECCEEEEECCCHHHHHHHHCCCCCCCCHHHH
SLVKNNKFKRIVVTTFSQLELDLAAGLAKRYPKTEIVDLHYGTPFLKLNMLPNLKILFSF
HHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCCEEEEEEE
SPTLESKKALLYSVLERTSPIPVVDLILKGSDEKTVSQP
CCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]