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The map label for this gene is yggW [C]

Identifier: 116327858

GI number: 116327858

Start: 1341395

End: 1342558

Strand: Reverse

Name: yggW [C]

Synonym: LBL_1136

Alternate gene names: 116327858

Gene position: 1342558-1341395 (Counterclockwise)

Preceding gene: 116327859

Following gene: 116327857

Centisome position: 37.14

GC content: 37.11

Gene sequence:

>1164_bases
ATGAAAATTGATTCCGGAAATCCTGTCACAAAGACTGGTTTTCCGGGAGTTTACGTCCATTATCCCTATTGCATTCAAAA
ATGTGAATATTGTGATTTTTATTCCCTGGGAAGCGGAAAAAAACCGATCCCGAACGAAAAAAACCTTTTTCAAAGATATC
AAGAAGAAATAAGGCAAAGAATTTCCGACAATCCTACTATTTCCAATTTAGAATTCGATACGATTTTTTTCGGAGGTGGA
ACACCCTCCCGAGCAGACATAACTCAAATTGCGAACCTCGTCGATTTTTTAAAAAATAACATTAATATTTCAGAATATTC
AGAAATTACTATGGAATGTAATCCTGAAGACATCACTCCCGATTTTTTAAAATCGATCGCACAAGCCGGAATCAACCGGA
TCTCCGTGGGCATACAGAGTTTTCATCCGGAAAGACTTCAATTTTTAGGTAGATACTACGATTCGAACAGGTACGAAAAT
ATTTTGGAAACGGTCAAAAATTCCGAAATTTCCAACTTCTCCGCCGACCTAATCTACGGAATTCCGGGACAATCGATCGA
GGAAATCTTAAAGGACGTTTTCCAGGTTTTAAAAGCGGGAGGAAAACATATCAGCCTCTACGCTCTCACTGTGGAAAAAG
GAACTCCGTATTCCAGAAAGATAATGGATAAAATCACTCCGGGACCCGAAGAAGAAATTCAGGAAGAAGTTTTAAAACTT
TTACCGAACCTCCTTTCTACGTATGAATTATTTCAATACGAAGTCAGCAATTATTCCAAACCTGGATTTTCGTCCGGCCA
CAATCTAAAATACTGGACGATGGAATATTATTTGGGAATCGGCCCAGGAGCTCACGGTTTTCTTCCTACAGGAAGATATT
CCAATCCGAGAAATGTGGAAGCGTATAAAACAAAAAATCTTTCTAAAAAATACACAAAGCCGGATCTTTATCAAGAACTC
GTTCTTTCTTTGTTTCGCTTATTTCAACCAATCTCCATGGAAAGTTTTTATGAGCTAATTCCCGAAAAAAAACAAATTTT
AAATAGGCAATTAAAACGAATGGAAGTATCGGGACTTTGCGAATTTTCAAACGGTATTTTTCAATGGAAACCGGAAGCCG
TTTTATTTTTAGATTCTAAAATTCTAGAACTCGCTTCTTTATAA

Upstream 100 bases:

>100_bases
CTAAAAAAGCGCTTTTGTATTCCGTTTTGGAAAGGACTTCCCCGATTCCGGTTGTAGATCTGATCTTAAAGGGTTCCGAC
GAAAAGACCGTCTCCCAGCC

Downstream 100 bases:

>100_bases
GTCACAGGAATTTCCCTCTGATAAAATGGACGTTTAAACAAACTTTACGATTCGAGACACACCCAAAATTAACCATAACG
TTACCCACAAATACTTGGAT

Product: Fe-S oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MKIDSGNPVTKTGFPGVYVHYPYCIQKCEYCDFYSLGSGKKPIPNEKNLFQRYQEEIRQRISDNPTISNLEFDTIFFGGG
TPSRADITQIANLVDFLKNNINISEYSEITMECNPEDITPDFLKSIAQAGINRISVGIQSFHPERLQFLGRYYDSNRYEN
ILETVKNSEISNFSADLIYGIPGQSIEEILKDVFQVLKAGGKHISLYALTVEKGTPYSRKIMDKITPGPEEEIQEEVLKL
LPNLLSTYELFQYEVSNYSKPGFSSGHNLKYWTMEYYLGIGPGAHGFLPTGRYSNPRNVEAYKTKNLSKKYTKPDLYQEL
VLSLFRLFQPISMESFYELIPEKKQILNRQLKRMEVSGLCEFSNGIFQWKPEAVLFLDSKILELASL

Sequences:

>Translated_387_residues
MKIDSGNPVTKTGFPGVYVHYPYCIQKCEYCDFYSLGSGKKPIPNEKNLFQRYQEEIRQRISDNPTISNLEFDTIFFGGG
TPSRADITQIANLVDFLKNNINISEYSEITMECNPEDITPDFLKSIAQAGINRISVGIQSFHPERLQFLGRYYDSNRYEN
ILETVKNSEISNFSADLIYGIPGQSIEEILKDVFQVLKAGGKHISLYALTVEKGTPYSRKIMDKITPGPEEEIQEEVLKL
LPNLLSTYELFQYEVSNYSKPGFSSGHNLKYWTMEYYLGIGPGAHGFLPTGRYSNPRNVEAYKTKNLSKKYTKPDLYQEL
VLSLFRLFQPISMESFYELIPEKKQILNRQLKRMEVSGLCEFSNGIFQWKPEAVLFLDSKILELASL
>Mature_387_residues
MKIDSGNPVTKTGFPGVYVHYPYCIQKCEYCDFYSLGSGKKPIPNEKNLFQRYQEEIRQRISDNPTISNLEFDTIFFGGG
TPSRADITQIANLVDFLKNNINISEYSEITMECNPEDITPDFLKSIAQAGINRISVGIQSFHPERLQFLGRYYDSNRYEN
ILETVKNSEISNFSADLIYGIPGQSIEEILKDVFQVLKAGGKHISLYALTVEKGTPYSRKIMDKITPGPEEEIQEEVLKL
LPNLLSTYELFQYEVSNYSKPGFSSGHNLKYWTMEYYLGIGPGAHGFLPTGRYSNPRNVEAYKTKNLSKKYTKPDLYQEL
VLSLFRLFQPISMESFYELIPEKKQILNRQLKRMEVSGLCEFSNGIFQWKPEAVLFLDSKILELASL

Specific function: Unknown

COG id: COG0635

COG function: function code H; Coproporphyrinogen III oxidase and related Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the anaerobic coproporphyrinogen-III oxidase family [H]

Homologues:

Organism=Homo sapiens, GI8922911, Length=290, Percent_Identity=32.0689655172414, Blast_Score=169, Evalue=4e-42,
Organism=Escherichia coli, GI1789325, Length=378, Percent_Identity=30.4232804232804, Blast_Score=180, Evalue=1e-46,
Organism=Escherichia coli, GI87082341, Length=229, Percent_Identity=25.764192139738, Blast_Score=92, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR004559
- InterPro:   IPR010723
- InterPro:   IPR007197 [H]

Pfam domain/function: PF06969 HemN_C; PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 44362; Mature: 44362

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIDSGNPVTKTGFPGVYVHYPYCIQKCEYCDFYSLGSGKKPIPNEKNLFQRYQEEIRQR
CCCCCCCCCCCCCCCEEEEECHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
ISDNPTISNLEFDTIFFGGGTPSRADITQIANLVDFLKNNINISEYSEITMECNPEDITP
HCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHCEEEEECCCCCCCH
DFLKSIAQAGINRISVGIQSFHPERLQFLGRYYDSNRYENILETVKNSEISNFSADLIYG
HHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCEEEC
IPGQSIEEILKDVFQVLKAGGKHISLYALTVEKGTPYSRKIMDKITPGPEEEIQEEVLKL
CCCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHH
LPNLLSTYELFQYEVSNYSKPGFSSGHNLKYWTMEYYLGIGPGAHGFLPTGRYSNPRNVE
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCH
AYKTKNLSKKYTKPDLYQELVLSLFRLFQPISMESFYELIPEKKQILNRQLKRMEVSGLC
HHHHCCCCHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHH
EFSNGIFQWKPEAVLFLDSKILELASL
HHCCCCEEECCCEEEEEHHHHHHHHCC
>Mature Secondary Structure
MKIDSGNPVTKTGFPGVYVHYPYCIQKCEYCDFYSLGSGKKPIPNEKNLFQRYQEEIRQR
CCCCCCCCCCCCCCCEEEEECHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
ISDNPTISNLEFDTIFFGGGTPSRADITQIANLVDFLKNNINISEYSEITMECNPEDITP
HCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHCEEEEECCCCCCCH
DFLKSIAQAGINRISVGIQSFHPERLQFLGRYYDSNRYENILETVKNSEISNFSADLIYG
HHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCEEEC
IPGQSIEEILKDVFQVLKAGGKHISLYALTVEKGTPYSRKIMDKITPGPEEEIQEEVLKL
CCCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHH
LPNLLSTYELFQYEVSNYSKPGFSSGHNLKYWTMEYYLGIGPGAHGFLPTGRYSNPRNVE
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCH
AYKTKNLSKKYTKPDLYQELVLSLFRLFQPISMESFYELIPEKKQILNRQLKRMEVSGLC
HHHHCCCCHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHH
EFSNGIFQWKPEAVLFLDSKILELASL
HHCCCCEEECCCEEEEEHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]