Click here to switch to the map view.

The map label for this gene is yebA [C]

Identifier: 116327796

GI number: 116327796

Start: 1241519

End: 1242535

Strand: Reverse

Name: yebA [C]

Synonym: LBL_1059

Alternate gene names: 116327796

Gene position: 1242535-1241519 (Counterclockwise)

Preceding gene: 116327798

Following gene: 116327795

Centisome position: 34.38

GC content: 43.66

Gene sequence:

>1017_bases
ATGACAAGTCCGGCAAAGTACAATCTCAAACTAACCCATTTCGAACGTTTGCAGGTCAAAATTCTCAAATTCAAAAATCT
TCTTCGGAAATTCAAAAAATCCGGTTCGAAAAAGATCTCCTTTTTACTGGTTCCGCACAGTCACGAAAACGTAATTCGCA
TCGAACTCAACGTATTCACGGTTTGGTTTCTTGGAATTCTTTCGGGACTTATTTTAGTCCTAGCATTCGTTTTTCTTACT
TACCTAAACTTTTTCTACCGTCCCGACCACGACCTGTTCCAAAAAAGCGACGAAAACGTAAGCCAATATTTATACTACGA
TATGCTTCTTCAGGATGCAAAAAAGGAAATCCATGGTTTAGAAAGAAAAACCGAACAACTTAACCTGGTGGCTTGGGACG
AAGTTCCTTGGAAACGAATTCTGACTTATGAAACGATTCCGGAATTTCATCTCAAAAAGGAAATCCCCGATTCCGAGACA
AACTTGGAACTTTACAAAAATACGGTCGAGGGTTTTGCGATTCAAAATATCGAGCTTTTTCGAATTCGCCAAGCCTTTGA
AAATGCGTTCGATTACTTAGAAGAAAGAGAATCGATTCTTTACGCACTTCCGAGGGGACGTCCTCTTAAGCCGGGTGTCG
GCTTCGTTTCTTCCACATTCGGAGGTAGGGTCGATCCCTTCGGTCTCGTAGTACTAGGAGAGCATCATTCGGGCGTGGAC
TTCGCTTCCGCGGAAGGTACTCCGATTTATGCAACTGCTCCCGGAATCGTGGTCGAATCCGGTCAATCTTCGGGCGGTTT
GGGAAAGAATATCCGAATCAATCATTTAAACGGAATCTTTACCGTCTACGGTCATTGTTCTCAGATTCTCGTAGAAAAAA
ACCAGATCGTCAAACGAGGAAATCTGATCGGTCTCGTCGGTTCCACCGGTAAGGCCACAGGACCTCACGTTCATTACGAA
GTGCATATAGGACAAGATCCTCCTCTGGATCCCGCCGAGTTCATCAATATCGAGTAA

Upstream 100 bases:

>100_bases
TCAACTGATCCTATTTTTTTCTTGAACAGATTGGACAGGAATTTCATATAAAGAATGAGTCTATAATCCCGTCGATCCCC
TTACCTGCAAGTAAAAATCT

Downstream 100 bases:

>100_bases
ACTGCAACCCTGAACTCTAAAACCGACCGTAGATTATCCCCCACAAGCACTTGGAGCCGAAGATAAATCTGTCGGAATTC
CGACAAATCCTCTGTGAAAC

Product: metalloendopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 337

Protein sequence:

>338_residues
MTSPAKYNLKLTHFERLQVKILKFKNLLRKFKKSGSKKISFLLVPHSHENVIRIELNVFTVWFLGILSGLILVLAFVFLT
YLNFFYRPDHDLFQKSDENVSQYLYYDMLLQDAKKEIHGLERKTEQLNLVAWDEVPWKRILTYETIPEFHLKKEIPDSET
NLELYKNTVEGFAIQNIELFRIRQAFENAFDYLEERESILYALPRGRPLKPGVGFVSSTFGGRVDPFGLVVLGEHHSGVD
FASAEGTPIYATAPGIVVESGQSSGGLGKNIRINHLNGIFTVYGHCSQILVEKNQIVKRGNLIGLVGSTGKATGPHVHYE
VHIGQDPPLDPAEFINIE

Sequences:

>Translated_338_residues
MTSPAKYNLKLTHFERLQVKILKFKNLLRKFKKSGSKKISFLLVPHSHENVIRIELNVFTVWFLGILSGLILVLAFVFLT
YLNFFYRPDHDLFQKSDENVSQYLYYDMLLQDAKKEIHGLERKTEQLNLVAWDEVPWKRILTYETIPEFHLKKEIPDSET
NLELYKNTVEGFAIQNIELFRIRQAFENAFDYLEERESILYALPRGRPLKPGVGFVSSTFGGRVDPFGLVVLGEHHSGVD
FASAEGTPIYATAPGIVVESGQSSGGLGKNIRINHLNGIFTVYGHCSQILVEKNQIVKRGNLIGLVGSTGKATGPHVHYE
VHIGQDPPLDPAEFINIE
>Mature_337_residues
TSPAKYNLKLTHFERLQVKILKFKNLLRKFKKSGSKKISFLLVPHSHENVIRIELNVFTVWFLGILSGLILVLAFVFLTY
LNFFYRPDHDLFQKSDENVSQYLYYDMLLQDAKKEIHGLERKTEQLNLVAWDEVPWKRILTYETIPEFHLKKEIPDSETN
LELYKNTVEGFAIQNIELFRIRQAFENAFDYLEERESILYALPRGRPLKPGVGFVSSTFGGRVDPFGLVVLGEHHSGVDF
ASAEGTPIYATAPGIVVESGQSSGGLGKNIRINHLNGIFTVYGHCSQILVEKNQIVKRGNLIGLVGSTGKATGPHVHYEV
HIGQDPPLDPAEFINIE

Specific function: Could Be Involved In Cell Wall Degradation Or Formation. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M23B family [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=104, Percent_Identity=45.1923076923077, Blast_Score=83, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR007340
- InterPro:   IPR016047
- InterPro:   IPR002886 [H]

Pfam domain/function: PF04225 OapA; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 38401; Mature: 38269

Theoretical pI: Translated: 7.49; Mature: 7.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSPAKYNLKLTHFERLQVKILKFKNLLRKFKKSGSKKISFLLVPHSHENVIRIELNVFT
CCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEHHHH
VWFLGILSGLILVLAFVFLTYLNFFYRPDHDLFQKSDENVSQYLYYDMLLQDAKKEIHGL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
ERKTEQLNLVAWDEVPWKRILTYETIPEFHLKKEIPDSETNLELYKNTVEGFAIQNIELF
HHHHHHEEEEEECCCCHHHHEEHHCCCCHHHHHCCCCCCCCHHHHHHHHCCEEECCCHHH
RIRQAFENAFDYLEERESILYALPRGRPLKPGVGFVSSTFGGRVDPFGLVVLGEHHSGVD
HHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCHHHHCCCCCCCCEEEEEEECCCCCCC
FASAEGTPIYATAPGIVVESGQSSGGLGKNIRINHLNGIFTVYGHCSQILVEKNQIVKRG
CCCCCCCEEEEECCCEEEECCCCCCCCCCCEEEEECCCEEEEHHHHHHHHHHHHHHHHCC
NLIGLVGSTGKATGPHVHYEVHIGQDPPLDPAEFINIE
CEEEEEECCCCCCCCEEEEEEEECCCCCCCHHHHCCCC
>Mature Secondary Structure 
TSPAKYNLKLTHFERLQVKILKFKNLLRKFKKSGSKKISFLLVPHSHENVIRIELNVFT
CCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEHHHH
VWFLGILSGLILVLAFVFLTYLNFFYRPDHDLFQKSDENVSQYLYYDMLLQDAKKEIHGL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
ERKTEQLNLVAWDEVPWKRILTYETIPEFHLKKEIPDSETNLELYKNTVEGFAIQNIELF
HHHHHHEEEEEECCCCHHHHEEHHCCCCHHHHHCCCCCCCCHHHHHHHHCCEEECCCHHH
RIRQAFENAFDYLEERESILYALPRGRPLKPGVGFVSSTFGGRVDPFGLVVLGEHHSGVD
HHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCHHHHCCCCCCCCEEEEEEECCCCCCC
FASAEGTPIYATAPGIVVESGQSSGGLGKNIRINHLNGIFTVYGHCSQILVEKNQIVKRG
CCCCCCCEEEEECCCEEEECCCCCCCCCCCEEEEECCCEEEEHHHHHHHHHHHHHHHHCC
NLIGLVGSTGKATGPHVHYEVHIGQDPPLDPAEFINIE
CEEEEEECCCCCCCCEEEEEEEECCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]