Click here to switch to the map view.

The map label for this gene is cph2 [H]

Identifier: 116327781

GI number: 116327781

Start: 1215080

End: 1216309

Strand: Reverse

Name: cph2 [H]

Synonym: LBL_1041

Alternate gene names: 116327781

Gene position: 1216309-1215080 (Counterclockwise)

Preceding gene: 116327782

Following gene: 116327777

Centisome position: 33.65

GC content: 39.92

Gene sequence:

>1230_bases
ATGAGATTTTCGTTAGGAAACAATCAAAAAATAAAGTTACTTGCACGGAGAGTTTTTTTCAATCCGCTTACGGATGATTA
CCTAAGAATCTATCAACCCGAAATCAAAAGAGCCACGGTCATCTATTTCTTTTTTTGTATCGGAATCAGTCTTATCGCGA
CTTTGGTCCCGGACGGAGAATCCGAGTTAGGTAAAGAAAATCGAATTCTTGCCTATTCGCGTTTAACGGTCGTCCTTTTG
TCCGCTTTTTTCGCATTTTTGCTTATAAAATGGAAATTTTTATTCCGCAAAAAAATCGAGAGATATAGCATTCTCTCTTC
GGGAATGATCGTACTTTCTATTCTCCCCTACGTCTTCTTTGATTCGGGAAGAATGGAGCTTTACTTTCATTTTTACACAA
CCTTAGTCGTAAGCGGAAACATTCTTCTTTGGTTCACCGGAGCGACCGTAATATTTTTCAACGTATTTTTTTATCTTTCC
TTGGTTTTGTGTACAACTCTGACCGGAAACACAAAAGTACTGCAGCACGATTTGGCTAACGTGTTGATTTATCTTTTTAC
GGGAGTATTCGGAAATCTTTTGATCAACTTCTGGAGAGTGATGGATCACCGTGCGAAGAAAAAACTGCAGAGAGCGGTGA
GTAAACTCAGAGAGAAAAATATTCATATCGAAAAAATCTCCAAAGTGGACGAACTCACCAAACTTTACAATCGAAGATAT
CTAATTGAACAATTCGAACTTTTTCTCAAAAGGGCGCAACGCTATCGATTCTCTCTCGCGATGATCATCTTAGATATGGA
TTACCTCAAGGAGATTAACGATTCTTACGGACATTTGGCGGGAGATTTGGCGCTTCGTACAATCTCGGACGTGATGAAAC
AAAGAGTAAGGGCGACAGATATCTGTTCCAGAATCGGGGGAGATGAATTTTGTATCCTTTTAGATGCGATCAAAAAGGAT
GATTTCGTCCAACTCTGCGAAAAATTAAGAATGGAAGTCGCCGAAAAAGAATTATCCTATCGAACCCCAAGCGGGGACCC
AGTTAAAATTTCCGTTTCCATCGGGGCTTGCATTCTCAGCCCGATGGAAGAGTTCAGTTTCGACGATATTTATCATTCCA
TTGATTCAGCTCTTTACGAATCCAAAAAAAAAGGAAGAAACCGAGTTTCTTTTATCGAACCGGGCCACTATTTTCCAAAA
ACGAATCAGGGAACTACGGCTGCTTCTTAG

Upstream 100 bases:

>100_bases
ATACAAAGTCGCCCAAACGGATTTATAAATCCTGATTGTTTAAACAAAATCGCTTCTAAAAATAGGGAGTTTAGATCTTA
TTCGGTCCTTTATAAAACAC

Downstream 100 bases:

>100_bases
GAACGGGAAGTTCGTAACGAAATGTGATTTGGCAATAGGCTCCGTCGTCTATATATTTCGTGTCGACCGCTTCCATAAAA
AACAGTCTGTTTTTTTGCTC

Product: two-component response regulator - (cyclic diguanylate (c-diGMP) effector molecule)

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MRFSLGNNQKIKLLARRVFFNPLTDDYLRIYQPEIKRATVIYFFFCIGISLIATLVPDGESELGKENRILAYSRLTVVLL
SAFFAFLLIKWKFLFRKKIERYSILSSGMIVLSILPYVFFDSGRMELYFHFYTTLVVSGNILLWFTGATVIFFNVFFYLS
LVLCTTLTGNTKVLQHDLANVLIYLFTGVFGNLLINFWRVMDHRAKKKLQRAVSKLREKNIHIEKISKVDELTKLYNRRY
LIEQFELFLKRAQRYRFSLAMIILDMDYLKEINDSYGHLAGDLALRTISDVMKQRVRATDICSRIGGDEFCILLDAIKKD
DFVQLCEKLRMEVAEKELSYRTPSGDPVKISVSIGACILSPMEEFSFDDIYHSIDSALYESKKKGRNRVSFIEPGHYFPK
TNQGTTAAS

Sequences:

>Translated_409_residues
MRFSLGNNQKIKLLARRVFFNPLTDDYLRIYQPEIKRATVIYFFFCIGISLIATLVPDGESELGKENRILAYSRLTVVLL
SAFFAFLLIKWKFLFRKKIERYSILSSGMIVLSILPYVFFDSGRMELYFHFYTTLVVSGNILLWFTGATVIFFNVFFYLS
LVLCTTLTGNTKVLQHDLANVLIYLFTGVFGNLLINFWRVMDHRAKKKLQRAVSKLREKNIHIEKISKVDELTKLYNRRY
LIEQFELFLKRAQRYRFSLAMIILDMDYLKEINDSYGHLAGDLALRTISDVMKQRVRATDICSRIGGDEFCILLDAIKKD
DFVQLCEKLRMEVAEKELSYRTPSGDPVKISVSIGACILSPMEEFSFDDIYHSIDSALYESKKKGRNRVSFIEPGHYFPK
TNQGTTAAS
>Mature_409_residues
MRFSLGNNQKIKLLARRVFFNPLTDDYLRIYQPEIKRATVIYFFFCIGISLIATLVPDGESELGKENRILAYSRLTVVLL
SAFFAFLLIKWKFLFRKKIERYSILSSGMIVLSILPYVFFDSGRMELYFHFYTTLVVSGNILLWFTGATVIFFNVFFYLS
LVLCTTLTGNTKVLQHDLANVLIYLFTGVFGNLLINFWRVMDHRAKKKLQRAVSKLREKNIHIEKISKVDELTKLYNRRY
LIEQFELFLKRAQRYRFSLAMIILDMDYLKEINDSYGHLAGDLALRTISDVMKQRVRATDICSRIGGDEFCILLDAIKKD
DFVQLCEKLRMEVAEKELSYRTPSGDPVKISVSIGACILSPMEEFSFDDIYHSIDSALYESKKKGRNRVSFIEPGHYFPK
TNQGTTAAS

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=223, Percent_Identity=32.2869955156951, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI87082007, Length=210, Percent_Identity=29.0476190476191, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1787262, Length=167, Percent_Identity=32.9341317365269, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1786584, Length=178, Percent_Identity=28.6516853932584, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI87081974, Length=170, Percent_Identity=34.1176470588235, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1787816, Length=167, Percent_Identity=32.9341317365269, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI87081881, Length=171, Percent_Identity=33.9181286549708, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI1787802, Length=173, Percent_Identity=31.7919075144509, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI1788381, Length=165, Percent_Identity=29.0909090909091, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1788085, Length=166, Percent_Identity=29.5180722891566, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI87081977, Length=180, Percent_Identity=27.7777777777778, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787541, Length=182, Percent_Identity=25.2747252747253, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 47452; Mature: 47452

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFSLGNNQKIKLLARRVFFNPLTDDYLRIYQPEIKRATVIYFFFCIGISLIATLVPDGE
CCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCH
SELGKENRILAYSRLTVVLLSAFFAFLLIKWKFLFRKKIERYSILSSGMIVLSILPYVFF
HHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
DSGRMELYFHFYTTLVVSGNILLWFTGATVIFFNVFFYLSLVLCTTLTGNTKVLQHDLAN
CCCCEEEEHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
VLIYLFTGVFGNLLINFWRVMDHRAKKKLQRAVSKLREKNIHIEKISKVDELTKLYNRRY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LIEQFELFLKRAQRYRFSLAMIILDMDYLKEINDSYGHLAGDLALRTISDVMKQRVRATD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ICSRIGGDEFCILLDAIKKDDFVQLCEKLRMEVAEKELSYRTPSGDPVKISVSIGACILS
HHHHCCCCCEEEEHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHH
PMEEFSFDDIYHSIDSALYESKKKGRNRVSFIEPGHYFPKTNQGTTAAS
HHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRFSLGNNQKIKLLARRVFFNPLTDDYLRIYQPEIKRATVIYFFFCIGISLIATLVPDGE
CCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCH
SELGKENRILAYSRLTVVLLSAFFAFLLIKWKFLFRKKIERYSILSSGMIVLSILPYVFF
HHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
DSGRMELYFHFYTTLVVSGNILLWFTGATVIFFNVFFYLSLVLCTTLTGNTKVLQHDLAN
CCCCEEEEHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
VLIYLFTGVFGNLLINFWRVMDHRAKKKLQRAVSKLREKNIHIEKISKVDELTKLYNRRY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LIEQFELFLKRAQRYRFSLAMIILDMDYLKEINDSYGHLAGDLALRTISDVMKQRVRATD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ICSRIGGDEFCILLDAIKKDDFVQLCEKLRMEVAEKELSYRTPSGDPVKISVSIGACILS
HHHHCCCCCEEEEHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHH
PMEEFSFDDIYHSIDSALYESKKKGRNRVSFIEPGHYFPKTNQGTTAAS
HHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]