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The map label for this gene is yebA [H]

Identifier: 116327746

GI number: 116327746

Start: 1171321

End: 1172109

Strand: Direct

Name: yebA [H]

Synonym: LBL_1002

Alternate gene names: 116327746

Gene position: 1171321-1172109 (Clockwise)

Preceding gene: 116327745

Following gene: 116327747

Centisome position: 32.41

GC content: 42.08

Gene sequence:

>789_bases
ATGAAAAGAAAAACTGGCTGTATTCTGGCGGGGTTGCTTGTACTCGGTCTATTTTTCAGCATAAAATCCTTTGCCAATAC
GAATCTTGAGGAAATCAAACTGGATAATCAATACCTTCAGACGTACAGAGGGCTGGAGGGAATTTGGATTGTTCCCAATC
GAGTTAAGGAATCCGTCGAAGATTTGATTCACAATTTTGGAACGACGGAACATGAAATCAAAAAGATTAACGGGATTCCT
GATAACGAAAGAATTTCCGTAACCGAGCCTATCTTCTTTCCTTATAATGAAAATTTTATCAGAAGTCTTCTTTTGGAAGA
TAAAGGCCGGGAGATTTTTCGTACCGATCAGAGGGAATTCATTTGGCCGATCAGTTTTAAGCATTCTTTTGTTACGTCTC
GATTGGGAAAAAGATGGAATGCAATGCATTCCGGAGTGGATATCGCCTGTCCGACCGGATCGATTGTGATTGCGGCGGCG
GATGGGATTGTTTTGGAATCCAAAAAAGACGGCGGTTATGGAAATAAGATTCTGCTTTCTCATCCCGGAATCAACGGAAT
CAATACTCTTTACGCTCACAATTCCCTACTTTATGTGAAAGAAGGAGATAAAGTGAAAAAAGGGCAGATTATCGCTCTCT
CCGGAAATACGGGGCATACGACCGGTCCTCACTTACACTTCGAAGTACGTTATCAAAATGTGGTATTAAATCCGGAACAC
TATTTTCCGGTCTTTCAATCTTCTTCCGAGGCTCGTGTGGCGATCGCTCGGGAGACGATAGAAGAATAA

Upstream 100 bases:

>100_bases
GGAGCAATAAGAGTGACTTCAGAAATTATTTTCCGTTGCCGACGTTCAATTGAGTAGGCCTCTAGGGGTTTGTTTGGCGA
CATATTTTGGAAGAAATGAT

Downstream 100 bases:

>100_bases
GTGTCCATCACGCGGGATTTTTGGAATCCCGAAGTCTATGAAACTCTTTTTCAAATGCCGCCCGGTAAGGCGGCATTCGA
TTTTGATAATACTCTTGTAA

Product: metallopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MKRKTGCILAGLLVLGLFFSIKSFANTNLEEIKLDNQYLQTYRGLEGIWIVPNRVKESVEDLIHNFGTTEHEIKKINGIP
DNERISVTEPIFFPYNENFIRSLLLEDKGREIFRTDQREFIWPISFKHSFVTSRLGKRWNAMHSGVDIACPTGSIVIAAA
DGIVLESKKDGGYGNKILLSHPGINGINTLYAHNSLLYVKEGDKVKKGQIIALSGNTGHTTGPHLHFEVRYQNVVLNPEH
YFPVFQSSSEARVAIARETIEE

Sequences:

>Translated_262_residues
MKRKTGCILAGLLVLGLFFSIKSFANTNLEEIKLDNQYLQTYRGLEGIWIVPNRVKESVEDLIHNFGTTEHEIKKINGIP
DNERISVTEPIFFPYNENFIRSLLLEDKGREIFRTDQREFIWPISFKHSFVTSRLGKRWNAMHSGVDIACPTGSIVIAAA
DGIVLESKKDGGYGNKILLSHPGINGINTLYAHNSLLYVKEGDKVKKGQIIALSGNTGHTTGPHLHFEVRYQNVVLNPEH
YFPVFQSSSEARVAIARETIEE
>Mature_262_residues
MKRKTGCILAGLLVLGLFFSIKSFANTNLEEIKLDNQYLQTYRGLEGIWIVPNRVKESVEDLIHNFGTTEHEIKKINGIP
DNERISVTEPIFFPYNENFIRSLLLEDKGREIFRTDQREFIWPISFKHSFVTSRLGKRWNAMHSGVDIACPTGSIVIAAA
DGIVLESKKDGGYGNKILLSHPGINGINTLYAHNSLLYVKEGDKVKKGQIIALSGNTGHTTGPHLHFEVRYQNVVLNPEH
YFPVFQSSSEARVAIARETIEE

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=98, Percent_Identity=44.8979591836735, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1789099, Length=125, Percent_Identity=39.2, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI87082174, Length=130, Percent_Identity=34.6153846153846, Blast_Score=71, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 29554; Mature: 29554

Theoretical pI: Translated: 7.78; Mature: 7.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRKTGCILAGLLVLGLFFSIKSFANTNLEEIKLDNQYLQTYRGLEGIWIVPNRVKESVE
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHEEECHHHHHHHCCCCEEEECCHHHHHHHH
DLIHNFGTTEHEIKKINGIPDNERISVTEPIFFPYNENFIRSLLLEDKGREIFRTDQREF
HHHHHCCCCHHHHHHHCCCCCCCEEEEECCEEECCCHHHHHHHHHHCCCCHHHCCCCCCE
IWPISFKHSFVTSRLGKRWNAMHSGVDIACPTGSIVIAAADGIVLESKKDGGYGNKILLS
EEEECCCHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEECCEEEECCCCCCCCCEEEEE
HPGINGINTLYAHNSLLYVKEGDKVKKGQIIALSGNTGHTTGPHLHFEVRYQNVVLNPEH
CCCCCCCEEEEECCEEEEEECCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEECCCC
YFPVFQSSSEARVAIARETIEE
CCCEECCCCCCEEEEEHHHHCC
>Mature Secondary Structure
MKRKTGCILAGLLVLGLFFSIKSFANTNLEEIKLDNQYLQTYRGLEGIWIVPNRVKESVE
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHEEECHHHHHHHCCCCEEEECCHHHHHHHH
DLIHNFGTTEHEIKKINGIPDNERISVTEPIFFPYNENFIRSLLLEDKGREIFRTDQREF
HHHHHCCCCHHHHHHHCCCCCCCEEEEECCEEECCCHHHHHHHHHHCCCCHHHCCCCCCE
IWPISFKHSFVTSRLGKRWNAMHSGVDIACPTGSIVIAAADGIVLESKKDGGYGNKILLS
EEEECCCHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEECCEEEECCCCCCCCCEEEEE
HPGINGINTLYAHNSLLYVKEGDKVKKGQIIALSGNTGHTTGPHLHFEVRYQNVVLNPEH
CCCCCCCEEEEECCEEEEEECCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEECCCC
YFPVFQSSSEARVAIARETIEE
CCCEECCCCCCEEEEEHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]