| Definition | Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008508 |
| Length | 3,614,446 |
Click here to switch to the map view.
The map label for this gene is ygcB [H]
Identifier: 116327448
GI number: 116327448
Start: 739059
End: 741854
Strand: Reverse
Name: ygcB [H]
Synonym: LBL_0664
Alternate gene names: 116327448
Gene position: 741854-739059 (Counterclockwise)
Preceding gene: 116327457
Following gene: 116327447
Centisome position: 20.52
GC content: 42.31
Gene sequence:
>2796_bases ATGAAAACCGAAGTAAAATCATATTACAAATACTGGGGAAAAGCGGATAAAGAAGGCAACTATCATCTTCTGGCCTATCA TTGTTTCGACGTTGCAGCGGTAGGAGAAGTTTACTTATCTCAAAACGAAACTCTATGCACCCATTTCTCTCGGAAATTAG GAATCGATCCCATAACTTTTAAAAATCTTTTTGTTTTTTTTCTGGTACTACATGATCTGGGAAAATTCTCGGATTGTTTC CAATCTCTCATTCCGAACGTCAAAAGTGCATTAGATAATTCGAATCCTCCAATCGGTTCTTATTCTATACGGCACGACAG TTTAGGTTATATTTTTTGGGGAAAATGGATCCTGAAAGACGAAAGATTCGGAAACTACGACGGACTTTTAACCGAACAGA ATTGGTTGAGTTGGAACGGATTACGCTCTTCCAAGGACAAAAGTTATTTTACGGAATTTTTAGACGTTTTGATTCGTTGT GTAACCGGACACCACGGACGTCCTCCTTCTAAAAACGGATATTCCGGACAAACGGCGGTCAGTCTGGATTCCCATTTTAC AGAAGCCGACCGGTCGGCCGCTTTGGACTTTTCCAAAGAAGTGAATCGTATCTTATCCCCGAATTTAAATTTCGATGGGG ATTTTAAAACGTTATACAACTCGGCCCTCCGAATTTCCTTTTGGCTCGCAGGGCTTTCCGTTTTGTACGATTGGATCGGT TCCAACGCTGAAATTTTCAAGTATCATCAAACTCCAATCGATTTAGAGGAATATTATACAAAAATTTCCTTAAAGAGAGC TCTGGATGCCATCAATAGGTCCGGGCTTTTGCCTTCTAAAATAACTTTCAACAAAGATCACTTTCGTATTTTTGAATATT TGCGGGAACCGACCCCTTTGCAGAAATTTTGCTCGGAAGTAGCGATACCGGACTCCCCTTCCCTTTTCATTTTAGAGGAC GTCACCGGTTCCGGGAAAACGGAAGCCGCTCTCATCTTAACCCATCGTCTTATGCAAAAAAGCGCCTACTCCGGTTTTTA TGTGGGTCTTCCGACAATGGCCACCGCAAACGGTATGTATCAAAGAATGAGCGGCGTATACAGAAACTTATATACGAAAG AATCCATCCCCTCTTTGGTCCTTGCACACGGTGCTCGGAATTTATCCGATTCCTTTCAAAGTTCCGTGATTTCGGATAAC GCAATTCTTACGGATCGAAATTATTCTCTCCAACTCGATAAGGACCCGGAAGAAAGCGCCAGCGCCATTTGTAACGTTTG GCTTTCGGATAATCAGAAAAAAAGTCTTCTCGCGGACGCTGGAGTCGGTACGATCGATCAAGCTCTTCTTTCCATACTCT CCACTAAGTTTCAATCCCTTCGAATGTTCGGTCTTTCCCGAAAGGTTCTCATTTTGGACGAAGTTCATTCCTACGATCCT TATATGGTCGAACTCATCTGTTGCCTTTTAAAAGCCCAGGCTAAAATAGGCGCCTCGGTGATTCTCCTTTCCGCAACCTT ACCGAAAATTCTTCGTAAAACGTTCTCCGAATCCTTTGCCTTAGGATTGGACACGGAACTTCAAGATTTAAAAAGTGTGG AATACCCTCTTGTATCTTTAATCTCCGATCGGTCCGAGGTGGAAGAAATTCCGATTTCCACTCGAAAGGAAGTGAGTAGA AAATTGAACGTGAAGTTCCTTTTCAACCAGGAACAAGTATTACAAAAAATATTAGAAATGTCGAATCAAGGACGTTGTGT CTGTTGGATTAGAAATACGGTTTCAGACGCCTCCCAGGCATTTTCTTTTCTCCATTCCAAGTTAGGCGATCAGGTTATCC TCTTCCATGCTAGATTTGTAATGGGCGATCGATTGAGCATAGAATCCCAAATTTTGGAAAACTTCGGAGTCCGAAGCGAT CAGAATTCGAGAAAAGGAAAAGTAGTCGTTGCAACCCAAGTTGTGGAACAGTCCTTGGATTTGGATTTCGACTGTATCAT CACGGATCTCGCTCCGATCGACCTAATTTTACAAAGGGCCGGTAGACTCCATAGACATTGTAGAGACATATTCGGAAACG CCAAACAGGGATTAGACGAAAGAGGAGAGCCGATCCTATGGATCTTTTCTCCGGAACCGATCGAGGATCCGACCTCGAAT TGGTTCAGTCAATTCAGTCGAGGCGGAAGTATGGTCTATTCGGATCACGGTAGGCTTTGGCTCACCGCAAAACTTCTCCA AGAACGAAAAGGTTGGAGAATGCCAGAAGATGCAAGAAATCTAATAGAGTCCGTGTATGGGATCGACGTTGAGATTCCGC AATCCTTTCGAGAAAATCAGTTCAAAGTGAAAAACGATAAGAAAAAACTGGAAAGCGCCGCGGCTTTGAGTACGATTCAT TTGGAGTTAGGGTATGACTCCACCTTAAACGAAACTTCTTGGGACGATTCCAAATTTTCCACAAGATACGGTATAGACAA CTCTTCCAAAGCGGTTCTGGCCAAGTTCGTTTCCGATCGTTTGGTTCCTTGGATCTCCGGCACAACCAGAGACTGGCAAA ATAGCGAACTTCCCGTTCCGAATTATCTTGTGGAAAAAGAAGTTATATTCGAAAATTTGAATTTTTCCGAAGTTATCTTT AACTGTAAAAAAAATCTACCGGATAAAGGTAAACATTGCGTTTTACTCCCCTTGTTCTACACAAACAATTCTTGGAGAGG CAAAGCCCTTAACAAAAAGAACGAAGTAGTTTCCTTTACCTACGACGAAAGATTCGGTTTTAGAAAAGAGAAATAA
Upstream 100 bases:
>100_bases AAGTCTTTCAAAAGTGTAAACAAATCCCACGGGTACAGCCCGCCGTGGGAATTTATCGTAAAAAGAAAAATCAATCCGCC ATTTGAAATATAAAAGATAG
Downstream 100 bases:
>100_bases AGAGGAACCTTATGAATTTAATCAAGGACGTTTGGATTCCGGTCCAAAGGTTTTCCGAAAAATTAGAAGAGATCTCCCCA TTTGAGATCACTTCCCGAAT
Product: helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 931; Mature: 931
Protein sequence:
>931_residues MKTEVKSYYKYWGKADKEGNYHLLAYHCFDVAAVGEVYLSQNETLCTHFSRKLGIDPITFKNLFVFFLVLHDLGKFSDCF QSLIPNVKSALDNSNPPIGSYSIRHDSLGYIFWGKWILKDERFGNYDGLLTEQNWLSWNGLRSSKDKSYFTEFLDVLIRC VTGHHGRPPSKNGYSGQTAVSLDSHFTEADRSAALDFSKEVNRILSPNLNFDGDFKTLYNSALRISFWLAGLSVLYDWIG SNAEIFKYHQTPIDLEEYYTKISLKRALDAINRSGLLPSKITFNKDHFRIFEYLREPTPLQKFCSEVAIPDSPSLFILED VTGSGKTEAALILTHRLMQKSAYSGFYVGLPTMATANGMYQRMSGVYRNLYTKESIPSLVLAHGARNLSDSFQSSVISDN AILTDRNYSLQLDKDPEESASAICNVWLSDNQKKSLLADAGVGTIDQALLSILSTKFQSLRMFGLSRKVLILDEVHSYDP YMVELICCLLKAQAKIGASVILLSATLPKILRKTFSESFALGLDTELQDLKSVEYPLVSLISDRSEVEEIPISTRKEVSR KLNVKFLFNQEQVLQKILEMSNQGRCVCWIRNTVSDASQAFSFLHSKLGDQVILFHARFVMGDRLSIESQILENFGVRSD QNSRKGKVVVATQVVEQSLDLDFDCIITDLAPIDLILQRAGRLHRHCRDIFGNAKQGLDERGEPILWIFSPEPIEDPTSN WFSQFSRGGSMVYSDHGRLWLTAKLLQERKGWRMPEDARNLIESVYGIDVEIPQSFRENQFKVKNDKKKLESAAALSTIH LELGYDSTLNETSWDDSKFSTRYGIDNSSKAVLAKFVSDRLVPWISGTTRDWQNSELPVPNYLVEKEVIFENLNFSEVIF NCKKNLPDKGKHCVLLPLFYTNNSWRGKALNKKNEVVSFTYDERFGFRKEK
Sequences:
>Translated_931_residues MKTEVKSYYKYWGKADKEGNYHLLAYHCFDVAAVGEVYLSQNETLCTHFSRKLGIDPITFKNLFVFFLVLHDLGKFSDCF QSLIPNVKSALDNSNPPIGSYSIRHDSLGYIFWGKWILKDERFGNYDGLLTEQNWLSWNGLRSSKDKSYFTEFLDVLIRC VTGHHGRPPSKNGYSGQTAVSLDSHFTEADRSAALDFSKEVNRILSPNLNFDGDFKTLYNSALRISFWLAGLSVLYDWIG SNAEIFKYHQTPIDLEEYYTKISLKRALDAINRSGLLPSKITFNKDHFRIFEYLREPTPLQKFCSEVAIPDSPSLFILED VTGSGKTEAALILTHRLMQKSAYSGFYVGLPTMATANGMYQRMSGVYRNLYTKESIPSLVLAHGARNLSDSFQSSVISDN AILTDRNYSLQLDKDPEESASAICNVWLSDNQKKSLLADAGVGTIDQALLSILSTKFQSLRMFGLSRKVLILDEVHSYDP YMVELICCLLKAQAKIGASVILLSATLPKILRKTFSESFALGLDTELQDLKSVEYPLVSLISDRSEVEEIPISTRKEVSR KLNVKFLFNQEQVLQKILEMSNQGRCVCWIRNTVSDASQAFSFLHSKLGDQVILFHARFVMGDRLSIESQILENFGVRSD QNSRKGKVVVATQVVEQSLDLDFDCIITDLAPIDLILQRAGRLHRHCRDIFGNAKQGLDERGEPILWIFSPEPIEDPTSN WFSQFSRGGSMVYSDHGRLWLTAKLLQERKGWRMPEDARNLIESVYGIDVEIPQSFRENQFKVKNDKKKLESAAALSTIH LELGYDSTLNETSWDDSKFSTRYGIDNSSKAVLAKFVSDRLVPWISGTTRDWQNSELPVPNYLVEKEVIFENLNFSEVIF NCKKNLPDKGKHCVLLPLFYTNNSWRGKALNKKNEVVSFTYDERFGFRKEK >Mature_931_residues MKTEVKSYYKYWGKADKEGNYHLLAYHCFDVAAVGEVYLSQNETLCTHFSRKLGIDPITFKNLFVFFLVLHDLGKFSDCF QSLIPNVKSALDNSNPPIGSYSIRHDSLGYIFWGKWILKDERFGNYDGLLTEQNWLSWNGLRSSKDKSYFTEFLDVLIRC VTGHHGRPPSKNGYSGQTAVSLDSHFTEADRSAALDFSKEVNRILSPNLNFDGDFKTLYNSALRISFWLAGLSVLYDWIG SNAEIFKYHQTPIDLEEYYTKISLKRALDAINRSGLLPSKITFNKDHFRIFEYLREPTPLQKFCSEVAIPDSPSLFILED VTGSGKTEAALILTHRLMQKSAYSGFYVGLPTMATANGMYQRMSGVYRNLYTKESIPSLVLAHGARNLSDSFQSSVISDN AILTDRNYSLQLDKDPEESASAICNVWLSDNQKKSLLADAGVGTIDQALLSILSTKFQSLRMFGLSRKVLILDEVHSYDP YMVELICCLLKAQAKIGASVILLSATLPKILRKTFSESFALGLDTELQDLKSVEYPLVSLISDRSEVEEIPISTRKEVSR KLNVKFLFNQEQVLQKILEMSNQGRCVCWIRNTVSDASQAFSFLHSKLGDQVILFHARFVMGDRLSIESQILENFGVRSD QNSRKGKVVVATQVVEQSLDLDFDCIITDLAPIDLILQRAGRLHRHCRDIFGNAKQGLDERGEPILWIFSPEPIEDPTSN WFSQFSRGGSMVYSDHGRLWLTAKLLQERKGWRMPEDARNLIESVYGIDVEIPQSFRENQFKVKNDKKKLESAAALSTIH LELGYDSTLNETSWDDSKFSTRYGIDNSSKAVLAKFVSDRLVPWISGTTRDWQNSELPVPNYLVEKEVIFENLNFSEVIF NCKKNLPDKGKHCVLLPLFYTNNSWRGKALNKKNEVVSFTYDERFGFRKEK
Specific function: Unknown
COG id: COG1203
COG function: function code R; Predicted helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1789119, Length=825, Percent_Identity=31.030303030303, Blast_Score=293, Evalue=2e-80,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006483 - InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR006474 - InterPro: IPR014021 [H]
Pfam domain/function: PF00270 DEAD [H]
EC number: NA
Molecular weight: Translated: 105951; Mature: 105951
Theoretical pI: Translated: 7.16; Mature: 7.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTEVKSYYKYWGKADKEGNYHLLAYHCFDVAAVGEVYLSQNETLCTHFSRKLGIDPITF CCCHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHH KNLFVFFLVLHDLGKFSDCFQSLIPNVKSALDNSNPPIGSYSIRHDSLGYIFWGKWILKD HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCEEEEEEEEEEC ERFGNYDGLLTEQNWLSWNGLRSSKDKSYFTEFLDVLIRCVTGHHGRPPSKNGYSGQTAV CCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE SLDSHFTEADRSAALDFSKEVNRILSPNLNFDGDFKTLYNSALRISFWLAGLSVLYDWIG EECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC SNAEIFKYHQTPIDLEEYYTKISLKRALDAINRSGLLPSKITFNKDHFRIFEYLREPTPL CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCHHHHHHHHHHCCCCH QKFCSEVAIPDSPSLFILEDVTGSGKTEAALILTHRLMQKSAYSGFYVGLPTMATANGMY HHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHH QRMSGVYRNLYTKESIPSLVLAHGARNLSDSFQSSVISDNAILTDRNYSLQLDKDPEESA HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEECCCCEEEECCCCCHHH SAICNVWLSDNQKKSLLADAGVGTIDQALLSILSTKFQSLRMFGLSRKVLILDEVHSYDP HHHEEEHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH YMVELICCLLKAQAKIGASVILLSATLPKILRKTFSESFALGLDTELQDLKSVEYPLVSL HHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH ISDRSEVEEIPISTRKEVSRKLNVKFLFNQEQVLQKILEMSNQGRCVCWIRNTVSDASQA HHCHHHHHHCCCCHHHHHHHHCCEEEEECHHHHHHHHHHHCCCCCEEEEECCHHHHHHHH FSFLHSKLGDQVILFHARFVMGDRLSIESQILENFGVRSDQNSRKGKVVVATQVVEQSLD HHHHHHHHCCEEEEEEHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHC LDFDCIITDLAPIDLILQRAGRLHRHCRDIFGNAKQGLDERGEPILWIFSPEPIEDPTSN CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCHHHCCCEEEEEECCCCCCCCHHH WFSQFSRGGSMVYSDHGRLWLTAKLLQERKGWRMPEDARNLIESVYGIDVEIPQSFRENQ HHHHHHCCCCEEEECCCCEEEEHHHHHHHCCCCCCHHHHHHHHHHHCCCEECCHHHCCCC FKVKNDKKKLESAAALSTIHLELGYDSTLNETSWDDSKFSTRYGIDNSSKAVLAKFVSDR CEECHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH LVPWISGTTRDWQNSELPVPNYLVEKEVIFENLNFSEVIFNCKKNLPDKGKHCVLLPLFY CCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCEEEEEEEE TNNSWRGKALNKKNEVVSFTYDERFGFRKEK ECCCCCCCCCCCCCCEEEEEECCCCCCCCCC >Mature Secondary Structure MKTEVKSYYKYWGKADKEGNYHLLAYHCFDVAAVGEVYLSQNETLCTHFSRKLGIDPITF CCCHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHH KNLFVFFLVLHDLGKFSDCFQSLIPNVKSALDNSNPPIGSYSIRHDSLGYIFWGKWILKD HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCEEEEEEEEEEC ERFGNYDGLLTEQNWLSWNGLRSSKDKSYFTEFLDVLIRCVTGHHGRPPSKNGYSGQTAV CCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE SLDSHFTEADRSAALDFSKEVNRILSPNLNFDGDFKTLYNSALRISFWLAGLSVLYDWIG EECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC SNAEIFKYHQTPIDLEEYYTKISLKRALDAINRSGLLPSKITFNKDHFRIFEYLREPTPL CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCHHHHHHHHHHCCCCH QKFCSEVAIPDSPSLFILEDVTGSGKTEAALILTHRLMQKSAYSGFYVGLPTMATANGMY HHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHH QRMSGVYRNLYTKESIPSLVLAHGARNLSDSFQSSVISDNAILTDRNYSLQLDKDPEESA HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEECCCCEEEECCCCCHHH SAICNVWLSDNQKKSLLADAGVGTIDQALLSILSTKFQSLRMFGLSRKVLILDEVHSYDP HHHEEEHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH YMVELICCLLKAQAKIGASVILLSATLPKILRKTFSESFALGLDTELQDLKSVEYPLVSL HHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH ISDRSEVEEIPISTRKEVSRKLNVKFLFNQEQVLQKILEMSNQGRCVCWIRNTVSDASQA HHCHHHHHHCCCCHHHHHHHHCCEEEEECHHHHHHHHHHHCCCCCEEEEECCHHHHHHHH FSFLHSKLGDQVILFHARFVMGDRLSIESQILENFGVRSDQNSRKGKVVVATQVVEQSLD HHHHHHHHCCEEEEEEHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHC LDFDCIITDLAPIDLILQRAGRLHRHCRDIFGNAKQGLDERGEPILWIFSPEPIEDPTSN CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCHHHCCCEEEEEECCCCCCCCHHH WFSQFSRGGSMVYSDHGRLWLTAKLLQERKGWRMPEDARNLIESVYGIDVEIPQSFRENQ HHHHHHCCCCEEEECCCCEEEEHHHHHHHCCCCCCHHHHHHHHHHHCCCEECCHHHCCCC FKVKNDKKKLESAAALSTIHLELGYDSTLNETSWDDSKFSTRYGIDNSSKAVLAKFVSDR CEECHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH LVPWISGTTRDWQNSELPVPNYLVEKEVIFENLNFSEVIFNCKKNLPDKGKHCVLLPLFY CCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCEEEEEEEE TNNSWRGKALNKKNEVVSFTYDERFGFRKEK ECCCCCCCCCCCCCCEEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503; 2005873; 7984428 [H]