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The map label for this gene is ygcI [H]

Identifier: 116327444

GI number: 116327444

Start: 735090

End: 735833

Strand: Reverse

Name: ygcI [H]

Synonym: LBL_0660

Alternate gene names: 116327444

Gene position: 735833-735090 (Counterclockwise)

Preceding gene: 116327445

Following gene: 116327443

Centisome position: 20.36

GC content: 41.67

Gene sequence:

>744_bases
ATGAAAGATTATTTGGTTTTTCGCCTCTACGGTCCTCTCGTTTCTTGGGGAAATATCGCAGTCGGCGAATATCGTCCCAG
CGATTCTTTTCCGACTAAATCCGCAATCATCGGTTTGATCTCGGCTTCTTTCGGATTCGATCGTTCGGAGGATGGAAAAA
TTTCGGAACTTGTTAAAAGCGTTTTTTTTGCCACCAAAACGCTCAATCCCGGAAATTTATTACGAGATTATCATACGATC
CAAAGCCCCGGAAACGTTAAACGGTCTTTACTTACTAGAAAGGACGAACTTTTGGATTCGGAGTACGTCGAGACTATTCT
TTCGAGCAGAGATTATAGAGTGGACGCCGTTTACGACGTAGCTCTCTCGGAAAAAAAACGGGCTCCCTACTCATTGAAGG
AAATTAGAAACGCTCTCTTGAGTCCGATCCATACTCCGTACTTAGGTAGAAAATCTTGTTCGATCGCTCTTCCTATGTGC
CCCGAGATTTTGAGCTCGGATTCATTTCCGAACGCATTCGAAGAATATAATAAAATTCTTATGAAGAAATACGAATCCTC
GGATTACAAAGATCCCTTGGCGGATTTGTCTTCCAAATCGTCCGCGATTTTGTATCTTTGGGAAGATCCAACGGAACTTT
CAGAAAAAGATCATACCCATTCTAGGAGAGACGAAATCTTAAACCGAAATAAATGGCAATTTCAAGATAGAAAGGAGTTT
TTCAAGAGTGTGTCCAAAGTTTGA

Upstream 100 bases:

>100_bases
AGTATACGGCTCCTGTGCTTCCGGGGGTTTTAAAACTTTCAACGTGGACTCCGGCAACGGCTCCTTAAAAGAAATATTAG
AATTTGCTCAAGAGGATTAG

Downstream 100 bases:

>100_bases
TCCGAGTATGATTGTCCTTAAATACGAATTTTATCTCCATGTTTCGGTCAATCAAATGCGAAAGCGATTATTATGTTGCG
ATCCATAGAAAACGAAGTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MKDYLVFRLYGPLVSWGNIAVGEYRPSDSFPTKSAIIGLISASFGFDRSEDGKISELVKSVFFATKTLNPGNLLRDYHTI
QSPGNVKRSLLTRKDELLDSEYVETILSSRDYRVDAVYDVALSEKKRAPYSLKEIRNALLSPIHTPYLGRKSCSIALPMC
PEILSSDSFPNAFEEYNKILMKKYESSDYKDPLADLSSKSSAILYLWEDPTELSEKDHTHSRRDEILNRNKWQFQDRKEF
FKSVSKV

Sequences:

>Translated_247_residues
MKDYLVFRLYGPLVSWGNIAVGEYRPSDSFPTKSAIIGLISASFGFDRSEDGKISELVKSVFFATKTLNPGNLLRDYHTI
QSPGNVKRSLLTRKDELLDSEYVETILSSRDYRVDAVYDVALSEKKRAPYSLKEIRNALLSPIHTPYLGRKSCSIALPMC
PEILSSDSFPNAFEEYNKILMKKYESSDYKDPLADLSSKSSAILYLWEDPTELSEKDHTHSRRDEILNRNKWQFQDRKEF
FKSVSKV
>Mature_247_residues
MKDYLVFRLYGPLVSWGNIAVGEYRPSDSFPTKSAIIGLISASFGFDRSEDGKISELVKSVFFATKTLNPGNLLRDYHTI
QSPGNVKRSLLTRKDELLDSEYVETILSSRDYRVDAVYDVALSEKKRAPYSLKEIRNALLSPIHTPYLGRKSCSIALPMC
PEILSSDSFPNAFEEYNKILMKKYESSDYKDPLADLSSKSSAILYLWEDPTELSEKDHTHSRRDEILNRNKWQFQDRKEF
FKSVSKV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082154, Length=167, Percent_Identity=34.7305389221557, Blast_Score=85, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021124
- InterPro:   IPR013422
- InterPro:   IPR010147 [H]

Pfam domain/function: PF09704 Cas_Cas5d [H]

EC number: NA

Molecular weight: Translated: 28332; Mature: 28332

Theoretical pI: Translated: 8.16; Mature: 8.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDYLVFRLYGPLVSWGNIAVGEYRPSDSFPTKSAIIGLISASFGFDRSEDGKISELVKS
CCCEEEEEECCCHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
VFFATKTLNPGNLLRDYHTIQSPGNVKRSLLTRKDELLDSEYVETILSSRDYRVDAVYDV
HHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHH
ALSEKKRAPYSLKEIRNALLSPIHTPYLGRKSCSIALPMCPEILSSDSFPNAFEEYNKIL
HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEECCCCHHHHCCCCCCHHHHHHHHHH
MKKYESSDYKDPLADLSSKSSAILYLWEDPTELSEKDHTHSRRDEILNRNKWQFQDRKEF
HHHHCCCCCCCHHHHHCCCCCEEEEEECCCHHHHHCCCHHHHHHHHHCCCCCCCHHHHHH
FKSVSKV
HHHHHCC
>Mature Secondary Structure
MKDYLVFRLYGPLVSWGNIAVGEYRPSDSFPTKSAIIGLISASFGFDRSEDGKISELVKS
CCCEEEEEECCCHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
VFFATKTLNPGNLLRDYHTIQSPGNVKRSLLTRKDELLDSEYVETILSSRDYRVDAVYDV
HHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHH
ALSEKKRAPYSLKEIRNALLSPIHTPYLGRKSCSIALPMCPEILSSDSFPNAFEEYNKIL
HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEECCCCHHHHCCCCCCHHHHHHHHHH
MKKYESSDYKDPLADLSSKSSAILYLWEDPTELSEKDHTHSRRDEILNRNKWQFQDRKEF
HHHHCCCCCCCHHHHHCCCCCEEEEEECCCHHHHHCCCHHHHHHHHHCCCCCCCHHHHHH
FKSVSKV
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]