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The map label for this gene is ydhD [H]

Identifier: 116326973

GI number: 116326973

Start: 162311

End: 163231

Strand: Direct

Name: ydhD [H]

Synonym: LBL_0140

Alternate gene names: 116326973

Gene position: 162311-163231 (Clockwise)

Preceding gene: 116326966

Following gene: 116326974

Centisome position: 4.49

GC content: 33.66

Gene sequence:

>921_bases
GTGAGCATCTTAAAATTTTTTATCGTATTGTCATTGATCGTTGGAAATCCGCTCTGGGGAACTGATCGATTTTTATATTG
GAATTACGCATCCATTGAGAGGTATTCAACATCGGATTGGGTAGGTATTTTTTCAAAATCACACACGATCTGTTATACAG
GATCTATCATTTTATCAAATGGTGATTTTAAGCCTTCACCTCTCCCGAAGAATTTCGTCGATCTCAGTAGGAATTATCAA
ATCAGGCTGATTCCGTTGATCAGTGCCATCTCTAAGAATAATTCTAGTTTTCTGAAATCAAACATAACAATCAAAATTGG
GATTCAAAACTTAATTCATTTTTTGGAACAAAACCCGGAAATTGCCGGTTTGCATTTGGACATAGAATTTCTCTCAAAAT
CTGAGATTCCGAGTTATAGGAAGTTCATACAAATGCTAAAACAAAAACTGCCCAAAGAAAAAGTTCTTACAATCGCAATT
TTCCCACAATTAGAATTCCCGAATCGAAATTTGGTTATCCATTCCGATTTGTTTCAAGAAAAATCCATCGATGAATTTGT
TTTGATGAGTTATGATTTTCATTCTCCTAAAACGAATCCTGGGCCCGTTACTTCTATTTCACTGACAAAGAAAAATTTGG
AATTTTTGTTAAAACGAATTCCAAGTTCTAAACTCTGGCTTGGGCTTCCTCTCTACGGATATTTTTGGAGTCAAAGTGGT
AAAGTAAAAATCCTTACACAAAATGACTATCGAAAGTTTAAGGAAAATTCGGAAATTATCCCAAACGAAGACGGTTTTAC
CGTTCTTAAAAACGAAAATGGAATCGGTTATATTTCCGATTTAAATACATTAGAAAAATATAAAAAACTAACTCAATCGT
ATAAACTTAAAGGAAACGCTTTTTGGAGAATCGGCTTTTAA

Upstream 100 bases:

>100_bases
CTCCTGGATGATTCCGGTTCTTTTCATGTAAGTAAAAAATCGGTCTGAAAGGTTCCCGGATTGATTGAAATTTATAAATT
GATTTTATAATTCATAAGAC

Downstream 100 bases:

>100_bases
CAAAGCTTGGAAAAAATTCCTTATTGATAAGTTCTATAAAAACTTAAAGATAAGCATATTAAGAGTTTGTCCCAAAACGT
AGGAACAATTGCAGCGATCC

Product: glycosyl hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MSILKFFIVLSLIVGNPLWGTDRFLYWNYASIERYSTSDWVGIFSKSHTICYTGSIILSNGDFKPSPLPKNFVDLSRNYQ
IRLIPLISAISKNNSSFLKSNITIKIGIQNLIHFLEQNPEIAGLHLDIEFLSKSEIPSYRKFIQMLKQKLPKEKVLTIAI
FPQLEFPNRNLVIHSDLFQEKSIDEFVLMSYDFHSPKTNPGPVTSISLTKKNLEFLLKRIPSSKLWLGLPLYGYFWSQSG
KVKILTQNDYRKFKENSEIIPNEDGFTVLKNENGIGYISDLNTLEKYKKLTQSYKLKGNAFWRIGF

Sequences:

>Translated_306_residues
MSILKFFIVLSLIVGNPLWGTDRFLYWNYASIERYSTSDWVGIFSKSHTICYTGSIILSNGDFKPSPLPKNFVDLSRNYQ
IRLIPLISAISKNNSSFLKSNITIKIGIQNLIHFLEQNPEIAGLHLDIEFLSKSEIPSYRKFIQMLKQKLPKEKVLTIAI
FPQLEFPNRNLVIHSDLFQEKSIDEFVLMSYDFHSPKTNPGPVTSISLTKKNLEFLLKRIPSSKLWLGLPLYGYFWSQSG
KVKILTQNDYRKFKENSEIIPNEDGFTVLKNENGIGYISDLNTLEKYKKLTQSYKLKGNAFWRIGF
>Mature_305_residues
SILKFFIVLSLIVGNPLWGTDRFLYWNYASIERYSTSDWVGIFSKSHTICYTGSIILSNGDFKPSPLPKNFVDLSRNYQI
RLIPLISAISKNNSSFLKSNITIKIGIQNLIHFLEQNPEIAGLHLDIEFLSKSEIPSYRKFIQMLKQKLPKEKVLTIAIF
PQLEFPNRNLVIHSDLFQEKSIDEFVLMSYDFHSPKTNPGPVTSISLTKKNLEFLLKRIPSSKLWLGLPLYGYFWSQSGK
VKILTQNDYRKFKENSEIIPNEDGFTVLKNENGIGYISDLNTLEKYKKLTQSYKLKGNAFWRIGF

Specific function: Unknown

COG id: COG3858

COG function: function code R; Predicted glycosyl hydrolase

Gene ontology:

Cell location: Spore wall (Probable). Note=Probably localized either on the surface of the outer spore membrane and/or in the inner spore coat [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 LysM repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011583
- InterPro:   IPR001223
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF00704 Glyco_hydro_18; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 35368; Mature: 35237

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSILKFFIVLSLIVGNPLWGTDRFLYWNYASIERYSTSDWVGIFSKSHTICYTGSIILSN
CHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHEEECCCCCEEEEECCCCEEEEEEEEEEEC
GDFKPSPLPKNFVDLSRNYQIRLIPLISAISKNNSSFLKSNITIKIGIQNLIHFLEQNPE
CCCCCCCCCCHHHHCCCCCEEEEEEEEHHHCCCCCCEEEECCEEEEEHHHHHHHHHCCCC
IAGLHLDIEFLSKSEIPSYRKFIQMLKQKLPKEKVLTIAIFPQLEFPNRNLVIHSDLFQE
EEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECEECCCCCEEEECCHHCC
KSIDEFVLMSYDFHSPKTNPGPVTSISLTKKNLEFLLKRIPSSKLWLGLPLYGYFWSQSG
CCCCCEEEEEEECCCCCCCCCCEEEEEEEHHHHHHHHHHCCCCCEEEECCCEEEEECCCC
KVKILTQNDYRKFKENSEIIPNEDGFTVLKNENGIGYISDLNTLEKYKKLTQSYKLKGNA
CEEEEECCHHHHHHCCCCCCCCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHEEECCCE
FWRIGF
EEEECC
>Mature Secondary Structure 
SILKFFIVLSLIVGNPLWGTDRFLYWNYASIERYSTSDWVGIFSKSHTICYTGSIILSN
HHHHHHHHHHHHHCCCCCCCCCEEEEEEHHEEECCCCCEEEEECCCCEEEEEEEEEEEC
GDFKPSPLPKNFVDLSRNYQIRLIPLISAISKNNSSFLKSNITIKIGIQNLIHFLEQNPE
CCCCCCCCCCHHHHCCCCCEEEEEEEEHHHCCCCCCEEEECCEEEEEHHHHHHHHHCCCC
IAGLHLDIEFLSKSEIPSYRKFIQMLKQKLPKEKVLTIAIFPQLEFPNRNLVIHSDLFQE
EEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECEECCCCCEEEECCHHCC
KSIDEFVLMSYDFHSPKTNPGPVTSISLTKKNLEFLLKRIPSSKLWLGLPLYGYFWSQSG
CCCCCEEEEEEECCCCCCCCCCEEEEEEEHHHHHHHHHHCCCCCEEEECCCEEEEECCCC
KVKILTQNDYRKFKENSEIIPNEDGFTVLKNENGIGYISDLNTLEKYKKLTQSYKLKGNA
CEEEEECCHHHHHHCCCCCCCCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHEEECCCE
FWRIGF
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377; 12177332 [H]