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The map label for this gene is hyfC [C]

Identifier: 116326953

GI number: 116326953

Start: 136150

End: 137037

Strand: Reverse

Name: hyfC [C]

Synonym: LBL_0119

Alternate gene names: 116326953

Gene position: 137037-136150 (Counterclockwise)

Preceding gene: 116326954

Following gene: 116326952

Centisome position: 3.79

GC content: 43.36

Gene sequence:

>888_bases
ATGGAAATTATTCTTAAATACTTTGATCCGATAATTCGAATAGTATCGTTTTTTGCTCTCCCATTTTTATGTGGAGGACT
TGTTCAAAAGATACGTTCTTATTCGCAAGGAAGAAAGGGCACTCCTGTTCTTCAAATATTCTACGATACTTGGAGAATGA
TTCGTAAAAAACCGGTGGATGGACCCTTTTCCGGGTTCTTTACGGAAGCGTCTCCTCTCATAGCTTTTTTGGCAGGGCTT
GTAGTTTGGAGTTTGGCGAGTTTCGAATGGGGGTCGTTTCTTCTTATCCCATTCCTAATCGGCGTTATGCGATTTGCGTT
ACTCGCCTATTCTGTGGAAAACGGCACTTCGTTTGCGGGAATGGGGGCGGCCAGAGAAATAATTCTCTATGTGTTTTGTG
AACCGATCATGATCCTCGTTCTCGTGGTGTTCGAATCTCATCTCGTGTTCAACGCGAATTTTGCAAGTCTTGCGTTCGGT
GGTCTTTTTTTGTTGGGGACCTCTTTGGTAATTTTAGCTGAACTTGCAAAACCGCCGTTTGACGATCCGAGAACTCACTT
GGAACTTACGATGGTTCACGAAGCGATGTTACTTGAAGCGTCCGGAAGCAGAAGGGCCCTTTTCGAATTGGCGCAGCAAT
TTAAAACAAGTTCCTTGTTTCTTTTTGTCGCAAAGATGGGCGTTTATCACGGGGAATTCTTTTTAAGTAGATCGGTGCCT
TCGTTTTGGCTCGATGTGGTTGCGACCTTGGGTGCACTTTTTGTTTCCATTTGTGTCGGTTACATCGAAGCGAATAGTAC
TCGAAGAAAATGGCTTTGGATTCCCGAGTTACTCGGCTTGAATTTTATCTTTATGCTCTTTTTGGGTATCCTTCTCAAAT
TAGGTTGA

Upstream 100 bases:

>100_bases
CAGATGAAGAATCGATTTCGATCAACCTTGCATTTTCGTCCGTAACCGTGGTGGTCCTTCTGTTTGTGATTATCGGTCTG
AAATTAACCGAGGGGGATTT

Downstream 100 bases:

>100_bases
TCCTAGGGAAAGTTTTATGGGAACAGAATTCAGTTATTTAATTCTCCTTTTACTGGGGGTAGTGATTTTACTTGAAAACC
GTTTGAAACGACTCGTGTTA

Product: formate hydrogenase, subunit C

Products: H2; oxidized ferredoxin [C]

Alternate protein names: NADH Dehydrogenase; Hydrogenase Membrane Subunit 3-Like Protein; Formate Hydrogenlyase HycD; Formate Hydrogenlyase Subunit 4-Like Protein; NAD-Dependent Dehydrogenase Subunit; Hydrogenase-4 Component C; Hydrogenase HycD Subunit; Hydrogenase-4 C Subunit; Hydrogenlyase Component; Hydrogenase-3 Subunit; Formate Hydrogenase Subunit C; Hydrogenase Subunit; Hydrogenase Protein; Formate Hydrogenlyase Subunit; Formate Hydrogenlyase Membrane Subunit Subunit HyfD; Hydrogenase HycD Subunit Family Protein; Hydrogenase-4 Subunit D

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MEIILKYFDPIIRIVSFFALPFLCGGLVQKIRSYSQGRKGTPVLQIFYDTWRMIRKKPVDGPFSGFFTEASPLIAFLAGL
VVWSLASFEWGSFLLIPFLIGVMRFALLAYSVENGTSFAGMGAAREIILYVFCEPIMILVLVVFESHLVFNANFASLAFG
GLFLLGTSLVILAELAKPPFDDPRTHLELTMVHEAMLLEASGSRRALFELAQQFKTSSLFLFVAKMGVYHGEFFLSRSVP
SFWLDVVATLGALFVSICVGYIEANSTRRKWLWIPELLGLNFIFMLFLGILLKLG

Sequences:

>Translated_295_residues
MEIILKYFDPIIRIVSFFALPFLCGGLVQKIRSYSQGRKGTPVLQIFYDTWRMIRKKPVDGPFSGFFTEASPLIAFLAGL
VVWSLASFEWGSFLLIPFLIGVMRFALLAYSVENGTSFAGMGAAREIILYVFCEPIMILVLVVFESHLVFNANFASLAFG
GLFLLGTSLVILAELAKPPFDDPRTHLELTMVHEAMLLEASGSRRALFELAQQFKTSSLFLFVAKMGVYHGEFFLSRSVP
SFWLDVVATLGALFVSICVGYIEANSTRRKWLWIPELLGLNFIFMLFLGILLKLG
>Mature_295_residues
MEIILKYFDPIIRIVSFFALPFLCGGLVQKIRSYSQGRKGTPVLQIFYDTWRMIRKKPVDGPFSGFFTEASPLIAFLAGL
VVWSLASFEWGSFLLIPFLIGVMRFALLAYSVENGTSFAGMGAAREIILYVFCEPIMILVLVVFESHLVFNANFASLAFG
GLFLLGTSLVILAELAKPPFDDPRTHLELTMVHEAMLLEASGSRRALFELAQQFKTSSLFLFVAKMGVYHGEFFLSRSVP
SFWLDVVATLGALFVSICVGYIEANSTRRKWLWIPELLGLNFIFMLFLGILLKLG

Specific function: Unknown

COG id: COG0650

COG function: function code C; Formate hydrogenlyase subunit 4

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 1.-.-.- [C]

Molecular weight: Translated: 33076; Mature: 33076

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIILKYFDPIIRIVSFFALPFLCGGLVQKIRSYSQGRKGTPVLQIFYDTWRMIRKKPVD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC
GPFSGFFTEASPLIAFLAGLVVWSLASFEWGSFLLIPFLIGVMRFALLAYSVENGTSFAG
CCCCCHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
MGAAREIILYVFCEPIMILVLVVFESHLVFNANFASLAFGGLFLLGTSLVILAELAKPPF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCC
DDPRTHLELTMVHEAMLLEASGSRRALFELAQQFKTSSLFLFVAKMGVYHGEFFLSRSVP
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
SFWLDVVATLGALFVSICVGYIEANSTRRKWLWIPELLGLNFIFMLFLGILLKLG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEIILKYFDPIIRIVSFFALPFLCGGLVQKIRSYSQGRKGTPVLQIFYDTWRMIRKKPVD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC
GPFSGFFTEASPLIAFLAGLVVWSLASFEWGSFLLIPFLIGVMRFALLAYSVENGTSFAG
CCCCCHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
MGAAREIILYVFCEPIMILVLVVFESHLVFNANFASLAFGGLFLLGTSLVILAELAKPPF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCC
DDPRTHLELTMVHEAMLLEASGSRRALFELAQQFKTSSLFLFVAKMGVYHGEFFLSRSVP
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
SFWLDVVATLGALFVSICVGYIEANSTRRKWLWIPELLGLNFIFMLFLGILLKLG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton; reduced ferredoxin [C]

Specific reaction: Proton + reduced ferredoxin = H2 + oxidized ferredoxin [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA