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The map label for this gene is pal [C]

Identifier: 116326910

GI number: 116326910

Start: 77536

End: 79173

Strand: Reverse

Name: pal [C]

Synonym: LBL_0069

Alternate gene names: 116326910

Gene position: 79173-77536 (Counterclockwise)

Preceding gene: 116326912

Following gene: 116326909

Centisome position: 2.19

GC content: 34.86

Gene sequence:

>1638_bases
ATGTATTCTTTTTTTCTAACTTTGAATGGCGTGTCTAAAAATTTACGTTTACTATATCAAAAACATCAAGTTAAAAAATT
TAGCTCCATATTCATTTACAGCGCGCCCAAAACCCGCGGCTGGACAGAACCTTATGTCAATTTTCGTTCCTTTTTTAGAA
TAGTTGCTAAATCTTTTTCCGATTTTCGCGGTATAAAAAAATTACCGTATTTTCCTGCTTTTCATAGATCTGAATTTCTT
TATCGGAAAAAATGGAATACTGATATCTTTGACAAAATGCCGAAGTATGAAAAAAATTTGTCGTCTTATTTCGTAATAAA
ATCCGCTAAAAATGGGGTACTAAGTTCGAAAGAAGATATCGTCAAATTATTCTTGAATCAATTCGTTTTTTTGTTAATAT
ATGCAGTTTTTTTAATTTTACTACCGATATTTTCCGTTGGCTCTCAGGAGTTGAATGAAATTAAGGGCTCCAGAAATCAA
AAGCCGGAAAAATTAAAAGGTTCTATCAATACAAATCTAAATGAGTTTGGAATTAGCCTTACGGATAGCGGAAATGTCCT
CTATTTTTATTCTAAAAGGGAAAATTCAATTTATACCGATCTTTACAAATCGACTCGCGTAGGAGATAAATGGCAACAAG
GGGAGGAAATTGAAAATCTCAATTCGAACTATGATGATCAAAGTCCTTTTATTTTAAATCAAGAAGAAGGGATTATTTTT
TCATCCAATCGGGATGGATCGATTGAATTTCAACTTTCTAATGGGAAGATCGGAGTTTCCAGAGATTTGTATTTTTCTAA
AAAAATAGATTCTTCCTGGATCAAACCTATGGCTCTTCCTAGAACGGTGAACACGGAAGAGATCGAAGAAAATCCGTTTT
TATTTGACAATCGATTGTATTTTACTCGCTATCCGTTCGGACAAGTTTCTGAAGCGGATATATTTGTTTCGGTTTATAGA
AACAAAACTTGGGAAAAGGCGACAAGTCTTCCTGGTCCGATCAACACGGCTTATTCCGAAATTGCGGCGACGATTAGCAG
GGACGGTAAGACGATTTATTTTTCTTCTAATCGTCCTGGAGGCTTTGGTGGCTATGATTTGTACAAATCCACTTTGCTTG
CAAATGGAGATTTTTCAGAACCGATCAATCTTGGACCCGACATTAATACGGCTGGCGATGAGGCTTTTTATTTGGAAGCT
GCTGATGGATCTACTTTTTATTTTTGTAGAAGAAGCGGGCATGATTATGATGTTTATTCTATTGTTTCTAATCCATTTCA
GGAATTAGAAAAAGGTAAGTCGATTTCTTTAGACAGTATTCATTTTGCTTTGGGATCTTATGAAATCCTCGAAGATTCTT
TTCCAATTTTAGAAAATTTGAATTCTTATTTGAGGGAAAATCCGGGTATAAAAATTAGAATCATAGGACATACAGATCTC
AATGGGGATTACCAAGACAATATAATTCTTAGTCATAATCGCGCAAATGCAGTAAAAGATTATCTGGTTAGAAAGGGAAT
CGATTCGGGCAGAATCGTAACCGATGGAAAGGGAAGTTCAGAACCGATCATTCCTCGAAAAGATCCGAAAACGGATTATA
AAAACAGAAGAACCGAATTTCAGATTATAAGTCCTTAG

Upstream 100 bases:

>100_bases
GTAATTTTCGGATTTTCATTTTTCTGATTTTTAAACTCAGGTTTTTATCAAAAAAACGGATAATAAGCATAGGGATTTTT
TTGAAATCTTTGGGGTTGTT

Downstream 100 bases:

>100_bases
AAATTATTTTTTTCTTTTAAAATGCTCTGGAAAAAAATCAGGATTAATCCAGCATTTGTTTCATGCTCGCGATAAGAATT
CTATGTTTGTTTTTGGTTTT

Product: OmpA-family protein

Products: NA

Alternate protein names: Ompa/Motb Domain Protein; Outer Membrane Protein; OmpA Family Protein; OmpA/MotB Domain-Containing Protein; OmpA/MotB; OmpA Family Outer Membrane Protein; OmpA Domain-Containing Protein; Peptidoglycan-Associated Lipoprotein; OmpA Domain Protein; Ompa Domain Protein; OmpA/MotB Family Outer Membrane Protein; OmpA-Family Protein; WD40 Domain-Containing Protein Beta Propeller; WD40 Domain-Containing Protein; Peptidoglycan Associated Lipoprotein; Outer Membrane Protein OmpA Family Protein; YceI Like Family; Type I Secretion Outer Membrane Protein lC Family; Surface Antigen Protein; Outer Membrane Protein A; Outer Membrane Protein Porin F; Peptidoglycan-Associated Outer Membrane Protein; Flagellar Motor Protein MotB; Exported OmpA Domain-Containing Protein; OmpA Family Peptidoglycan-Associated Lipoprotein; Inner Membrane Lipoprotein YiaD; Outer Membrane Protein-Like Peptidoglycan-Associatedprotein; Beta Propeller Repeat-Containing Protein

Number of amino acids: Translated: 545; Mature: 545

Protein sequence:

>545_residues
MYSFFLTLNGVSKNLRLLYQKHQVKKFSSIFIYSAPKTRGWTEPYVNFRSFFRIVAKSFSDFRGIKKLPYFPAFHRSEFL
YRKKWNTDIFDKMPKYEKNLSSYFVIKSAKNGVLSSKEDIVKLFLNQFVFLLIYAVFLILLPIFSVGSQELNEIKGSRNQ
KPEKLKGSINTNLNEFGISLTDSGNVLYFYSKRENSIYTDLYKSTRVGDKWQQGEEIENLNSNYDDQSPFILNQEEGIIF
SSNRDGSIEFQLSNGKIGVSRDLYFSKKIDSSWIKPMALPRTVNTEEIEENPFLFDNRLYFTRYPFGQVSEADIFVSVYR
NKTWEKATSLPGPINTAYSEIAATISRDGKTIYFSSNRPGGFGGYDLYKSTLLANGDFSEPINLGPDINTAGDEAFYLEA
ADGSTFYFCRRSGHDYDVYSIVSNPFQELEKGKSISLDSIHFALGSYEILEDSFPILENLNSYLRENPGIKIRIIGHTDL
NGDYQDNIILSHNRANAVKDYLVRKGIDSGRIVTDGKGSSEPIIPRKDPKTDYKNRRTEFQIISP

Sequences:

>Translated_545_residues
MYSFFLTLNGVSKNLRLLYQKHQVKKFSSIFIYSAPKTRGWTEPYVNFRSFFRIVAKSFSDFRGIKKLPYFPAFHRSEFL
YRKKWNTDIFDKMPKYEKNLSSYFVIKSAKNGVLSSKEDIVKLFLNQFVFLLIYAVFLILLPIFSVGSQELNEIKGSRNQ
KPEKLKGSINTNLNEFGISLTDSGNVLYFYSKRENSIYTDLYKSTRVGDKWQQGEEIENLNSNYDDQSPFILNQEEGIIF
SSNRDGSIEFQLSNGKIGVSRDLYFSKKIDSSWIKPMALPRTVNTEEIEENPFLFDNRLYFTRYPFGQVSEADIFVSVYR
NKTWEKATSLPGPINTAYSEIAATISRDGKTIYFSSNRPGGFGGYDLYKSTLLANGDFSEPINLGPDINTAGDEAFYLEA
ADGSTFYFCRRSGHDYDVYSIVSNPFQELEKGKSISLDSIHFALGSYEILEDSFPILENLNSYLRENPGIKIRIIGHTDL
NGDYQDNIILSHNRANAVKDYLVRKGIDSGRIVTDGKGSSEPIIPRKDPKTDYKNRRTEFQIISP
>Mature_545_residues
MYSFFLTLNGVSKNLRLLYQKHQVKKFSSIFIYSAPKTRGWTEPYVNFRSFFRIVAKSFSDFRGIKKLPYFPAFHRSEFL
YRKKWNTDIFDKMPKYEKNLSSYFVIKSAKNGVLSSKEDIVKLFLNQFVFLLIYAVFLILLPIFSVGSQELNEIKGSRNQ
KPEKLKGSINTNLNEFGISLTDSGNVLYFYSKRENSIYTDLYKSTRVGDKWQQGEEIENLNSNYDDQSPFILNQEEGIIF
SSNRDGSIEFQLSNGKIGVSRDLYFSKKIDSSWIKPMALPRTVNTEEIEENPFLFDNRLYFTRYPFGQVSEADIFVSVYR
NKTWEKATSLPGPINTAYSEIAATISRDGKTIYFSSNRPGGFGGYDLYKSTLLANGDFSEPINLGPDINTAGDEAFYLEA
ADGSTFYFCRRSGHDYDVYSIVSNPFQELEKGKSISLDSIHFALGSYEILEDSFPILENLNSYLRENPGIKIRIIGHTDL
NGDYQDNIILSHNRANAVKDYLVRKGIDSGRIVTDGKGSSEPIIPRKDPKTDYKNRRTEFQIISP

Specific function: Thought To Play A Role In Bacterial Envelope Integrity. Very Strongly Associated With The Peptidoglycan. [C]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Attached To The Outer Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786962, Length=98, Percent_Identity=36.734693877551, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 62532; Mature: 62532

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYSFFLTLNGVSKNLRLLYQKHQVKKFSSIFIYSAPKTRGWTEPYVNFRSFFRIVAKSFS
CEEEEEEECCCCHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
DFRGIKKLPYFPAFHRSEFLYRKKWNTDIFDKMPKYEKNLSSYFVIKSAKNGVLSSKEDI
HHHCHHCCCCCCCHHCCHHHHHHCCCCCHHHHCCHHHHCCCEEEEEECCCCCCCCCHHHH
VKLFLNQFVFLLIYAVFLILLPIFSVGSQELNEIKGSRNQKPEKLKGSINTNLNEFGISL
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHCCCCCCCHHHHCEEE
TDSGNVLYFYSKRENSIYTDLYKSTRVGDKWQQGEEIENLNSNYDDQSPFILNQEEGIIF
ECCCCEEEEEECCCCCHHHHHHHHCCCCCHHHCCCHHHHCCCCCCCCCCEEEECCCCEEE
SSNRDGSIEFQLSNGKIGVSRDLYFSKKIDSSWIKPMALPRTVNTEEIEENPFLFDNRLY
ECCCCCEEEEEECCCCEEECCCEEEECCCCCHHCCCCCCCCCCCHHHHCCCCEEEECEEE
FTRYPFGQVSEADIFVSVYRNKTWEKATSLPGPINTAYSEIAATISRDGKTIYFSSNRPG
EEECCCCCCCCCEEEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCC
GFGGYDLYKSTLLANGDFSEPINLGPDINTAGDEAFYLEAADGSTFYFCRRSGHDYDVYS
CCCCHHHHHHHEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCHHH
IVSNPFQELEKGKSISLDSIHFALGSYEILEDSFPILENLNSYLRENPGIKIRIIGHTDL
HHHHHHHHHHCCCCCCCCCEEHHHCCHHHHHCCCHHHHHHHHHHHCCCCEEEEEEEECCC
NGDYQDNIILSHNRANAVKDYLVRKGIDSGRIVTDGKGSSEPIIPRKDPKTDYKNRRTEF
CCCCCCCEEEECCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCHHCCCCCE
QIISP
EEECC
>Mature Secondary Structure
MYSFFLTLNGVSKNLRLLYQKHQVKKFSSIFIYSAPKTRGWTEPYVNFRSFFRIVAKSFS
CEEEEEEECCCCHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
DFRGIKKLPYFPAFHRSEFLYRKKWNTDIFDKMPKYEKNLSSYFVIKSAKNGVLSSKEDI
HHHCHHCCCCCCCHHCCHHHHHHCCCCCHHHHCCHHHHCCCEEEEEECCCCCCCCCHHHH
VKLFLNQFVFLLIYAVFLILLPIFSVGSQELNEIKGSRNQKPEKLKGSINTNLNEFGISL
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHCCCCCCCHHHHCEEE
TDSGNVLYFYSKRENSIYTDLYKSTRVGDKWQQGEEIENLNSNYDDQSPFILNQEEGIIF
ECCCCEEEEEECCCCCHHHHHHHHCCCCCHHHCCCHHHHCCCCCCCCCCEEEECCCCEEE
SSNRDGSIEFQLSNGKIGVSRDLYFSKKIDSSWIKPMALPRTVNTEEIEENPFLFDNRLY
ECCCCCEEEEEECCCCEEECCCEEEECCCCCHHCCCCCCCCCCCHHHHCCCCEEEECEEE
FTRYPFGQVSEADIFVSVYRNKTWEKATSLPGPINTAYSEIAATISRDGKTIYFSSNRPG
EEECCCCCCCCCEEEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCC
GFGGYDLYKSTLLANGDFSEPINLGPDINTAGDEAFYLEAADGSTFYFCRRSGHDYDVYS
CCCCHHHHHHHEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCHHH
IVSNPFQELEKGKSISLDSIHFALGSYEILEDSFPILENLNSYLRENPGIKIRIIGHTDL
HHHHHHHHHHCCCCCCCCCEEHHHCCHHHHHCCCHHHHHHHHHHHCCCCEEEEEEEECCC
NGDYQDNIILSHNRANAVKDYLVRKGIDSGRIVTDGKGSSEPIIPRKDPKTDYKNRRTEF
CCCCCCCEEEECCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCHHCCCCCE
QIISP
EEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA