| Definition | Rhizobium leguminosarum bv. viciae 3841 plasmid pRL12, complete sequence. |
|---|---|
| Accession | NC_008378 |
| Length | 870,021 |
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The map label for this gene is hutH [H]
Identifier: 116249411
GI number: 116249411
Start: 815377
End: 816882
Strand: Direct
Name: hutH [H]
Synonym: pRL120749
Alternate gene names: 116249411
Gene position: 815377-816882 (Clockwise)
Preceding gene: 116249410
Following gene: 116249412
Centisome position: 93.72
GC content: 63.55
Gene sequence:
>1506_bases GTGAGCGCCACCAATTCTCCGTCGATCATCTTCAGCGCGGCGCCGCCGACGATCGAGGACATCGCAGCAATTGCCCGTCG TCACGCAAGGATCGAGGTATCCGCCGAGGTCGAGGCCCGGATTGTGGCCGCGCGCGCCGTCGTCGACCGCTATACGGAAA GCGACCTGCCGGTCTATGGCCTGACGACGGGACTTGGAGCGGGGGTCGATACACGACTTGCAACGGAAGATCTGGTGGCG TTCCAGCTGCGTGTGCCGCAAGCCCGCGCGGTCGGCGTTGGAGAGCCGCTTGCCCGGGAATCCGTGCGGGCGATGATGGC CGTCAGGGCCGCCGGCATGGCGGCGGGCGGTACCGGCGTTTCGCTGAAAGTCTTCCAGGGTCTGATTGCCGCCATCAATG CAGGTGTGCATCCCGTCGTCCCGTCATTGGGCTCGATCGGTGCGGCGGATTTGGCGCCGCTTGCCCATATGAGCCGGGGC CTCCTGGGCTTCGGTGAGATCGAGCTTGGCGGCGAAGTGCTGCCGGCCGCCATCGCCCTTGACAGGGCCGGCCTGAAGCC CCTCGAATTCGCGCCGAAGGACGGGCATGCGCTTGTTGTGGCCAACAGCCTCTCCATCGGCCTCGCCTGCTTGACGCTTG TGGATATCGAGCGGCTCTTCGATTGGTCCCTGAAGGCGATTGCCATTAGTTTCGAAGCGTTCCGGGCCAATGTCAGTGCC TTCGACGACCGCGCACTGGCTGCAAGACCGGCCTTTGGGCAGCGCCGCGTCGCCGCTCAGCTGATGGAGCTTCTTTCGGG CAGCTCCTTGCTTACCGCCGATGCAGCAAGGCGTCTGCAGGATCCTTTGAGCTACCGCTGCACGCCGCAGGTCTGGGGCG CGTTGAGGCATGCGATCGATGAGGCAAGGCAGGCGACTGACATAGAGCTCGTCAGTTCCAGCGACAATCCTGTCGTGATC GCATCCGAAGGCGTCATTCTTTCGCACGGCAATTTCGACATGACCGCCTTTGTGCTCGCCTGGGAAAGGCTGGGGCAGGC GATGGCGCATTGTGCGGCAGGCACCGCCTATCGGATCATGAAGATCATGTCGCCCGGCATGTCCGACCTCCCACGCTTTC TGACCCCGATGGGCCAGAGCCGTACTGGTTTTGCGACCGTGCAAAAGACCGTCTCGGCCATGGAAGCCGAAATCCGCCAC CTGGCCATGCCGGTTTCGCTTTCGCCCATTCCTGTCGCCGATGGCGTCGAAGACCAGGCATCGATGGCTCCGAGCGTTTT GGCAAAGGCGCAGGCGATCGTCGAGCGCCTGCGCTATCTGGTCGCCATCGAACTGATTGCTTCGGTGCAGGCCGTCGAGC TCAGAGGCGTCTCGGGCGAATTGGGCAAAGGATCGGCGCAAGCCTATGCCTTTGTCCGCACCCACGTCCCGGCGCTTGAA GAGGATCGCGCGCAAGGGCCGGATTTTGCGACAATTGCCGCATTGATCGGGCTTGGCCCGCAATAA
Upstream 100 bases:
>100_bases TGACCTGCGCGCTGTTATACTATCCCGGCGCGCAATACCGGCTGGAAGCACGGTCCACCAAGGGTCCCTCCAGGCCCGTC GCCATTCTCGGAGAGAAACA
Downstream 100 bases:
>100_bases GCCGGTTCGCCACTGCCCCGGCAAGAAGGGCAGGGCGCCGACCGGTCATGCTGACGGTTATTCCGGGGAATGCCGTCAGT CCGTTCATTGAAAAGTCAAC
Product: putative histidine ammonia-lyase
Products: NA
Alternate protein names: Histidase [H]
Number of amino acids: Translated: 501; Mature: 500
Protein sequence:
>501_residues MSATNSPSIIFSAAPPTIEDIAAIARRHARIEVSAEVEARIVAARAVVDRYTESDLPVYGLTTGLGAGVDTRLATEDLVA FQLRVPQARAVGVGEPLARESVRAMMAVRAAGMAAGGTGVSLKVFQGLIAAINAGVHPVVPSLGSIGAADLAPLAHMSRG LLGFGEIELGGEVLPAAIALDRAGLKPLEFAPKDGHALVVANSLSIGLACLTLVDIERLFDWSLKAIAISFEAFRANVSA FDDRALAARPAFGQRRVAAQLMELLSGSSLLTADAARRLQDPLSYRCTPQVWGALRHAIDEARQATDIELVSSSDNPVVI ASEGVILSHGNFDMTAFVLAWERLGQAMAHCAAGTAYRIMKIMSPGMSDLPRFLTPMGQSRTGFATVQKTVSAMEAEIRH LAMPVSLSPIPVADGVEDQASMAPSVLAKAQAIVERLRYLVAIELIASVQAVELRGVSGELGKGSAQAYAFVRTHVPALE EDRAQGPDFATIAALIGLGPQ
Sequences:
>Translated_501_residues MSATNSPSIIFSAAPPTIEDIAAIARRHARIEVSAEVEARIVAARAVVDRYTESDLPVYGLTTGLGAGVDTRLATEDLVA FQLRVPQARAVGVGEPLARESVRAMMAVRAAGMAAGGTGVSLKVFQGLIAAINAGVHPVVPSLGSIGAADLAPLAHMSRG LLGFGEIELGGEVLPAAIALDRAGLKPLEFAPKDGHALVVANSLSIGLACLTLVDIERLFDWSLKAIAISFEAFRANVSA FDDRALAARPAFGQRRVAAQLMELLSGSSLLTADAARRLQDPLSYRCTPQVWGALRHAIDEARQATDIELVSSSDNPVVI ASEGVILSHGNFDMTAFVLAWERLGQAMAHCAAGTAYRIMKIMSPGMSDLPRFLTPMGQSRTGFATVQKTVSAMEAEIRH LAMPVSLSPIPVADGVEDQASMAPSVLAKAQAIVERLRYLVAIELIASVQAVELRGVSGELGKGSAQAYAFVRTHVPALE EDRAQGPDFATIAALIGLGPQ >Mature_500_residues SATNSPSIIFSAAPPTIEDIAAIARRHARIEVSAEVEARIVAARAVVDRYTESDLPVYGLTTGLGAGVDTRLATEDLVAF QLRVPQARAVGVGEPLARESVRAMMAVRAAGMAAGGTGVSLKVFQGLIAAINAGVHPVVPSLGSIGAADLAPLAHMSRGL LGFGEIELGGEVLPAAIALDRAGLKPLEFAPKDGHALVVANSLSIGLACLTLVDIERLFDWSLKAIAISFEAFRANVSAF DDRALAARPAFGQRRVAAQLMELLSGSSLLTADAARRLQDPLSYRCTPQVWGALRHAIDEARQATDIELVSSSDNPVVIA SEGVILSHGNFDMTAFVLAWERLGQAMAHCAAGTAYRIMKIMSPGMSDLPRFLTPMGQSRTGFATVQKTVSAMEAEIRHL AMPVSLSPIPVADGVEDQASMAPSVLAKAQAIVERLRYLVAIELIASVQAVELRGVSGELGKGSAQAYAFVRTHVPALEE DRAQGPDFATIAALIGLGPQ
Specific function: Unknown
COG id: COG2986
COG function: function code E; Histidine ammonia-lyase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PAL/histidase family [H]
Homologues:
Organism=Homo sapiens, GI4504333, Length=481, Percent_Identity=30.977130977131, Blast_Score=218, Evalue=9e-57, Organism=Caenorhabditis elegans, GI17567831, Length=493, Percent_Identity=32.657200811359, Blast_Score=208, Evalue=5e-54,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005921 - InterPro: IPR008948 - InterPro: IPR001106 - InterPro: IPR022313 [H]
Pfam domain/function: PF00221 PAL [H]
EC number: =4.3.1.3 [H]
Molecular weight: Translated: 52545; Mature: 52414
Theoretical pI: Translated: 5.87; Mature: 5.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSATNSPSIIFSAAPPTIEDIAAIARRHARIEVSAEVEARIVAARAVVDRYTESDLPVYG CCCCCCCCEEEECCCCCHHHHHHHHHHHCEEEEECCHHHHHHHHHHHHHHHCCCCCCEEE LTTGLGAGVDTRLATEDLVAFQLRVPQARAVGVGEPLARESVRAMMAVRAAGMAAGGTGV ECCCCCCCCCCHHHHHHHHEEEEECCCHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC SLKVFQGLIAAINAGVHPVVPSLGSIGAADLAPLAHMSRGLLGFGEIELGGEVLPAAIAL HHHHHHHHHHHHCCCCCHHCCCCCCCCCHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHH DRAGLKPLEFAPKDGHALVVANSLSIGLACLTLVDIERLFDWSLKAIAISFEAFRANVSA HHCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCHHHHEEEHHHHHCCHHH FDDRALAARPAFGQRRVAAQLMELLSGSSLLTADAARRLQDPLSYRCTPQVWGALRHAID CCCCHHHCCCCCCHHHHHHHHHHHHCCCCEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHH EARQATDIELVSSSDNPVVIASEGVILSHGNFDMTAFVLAWERLGQAMAHCAAGTAYRIM HHHCCCCEEEEECCCCCEEEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH KIMSPGMSDLPRFLTPMGQSRTGFATVQKTVSAMEAEIRHLAMPVSLSPIPVADGVEDQA HHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH SMAPSVLAKAQAIVERLRYLVAIELIASVQAVELRGVSGELGKGSAQAYAFVRTHVPALE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHEEEHHHCCCCCH EDRAQGPDFATIAALIGLGPQ HHHCCCCCHHHHHHHHCCCCC >Mature Secondary Structure SATNSPSIIFSAAPPTIEDIAAIARRHARIEVSAEVEARIVAARAVVDRYTESDLPVYG CCCCCCCEEEECCCCCHHHHHHHHHHHCEEEEECCHHHHHHHHHHHHHHHCCCCCCEEE LTTGLGAGVDTRLATEDLVAFQLRVPQARAVGVGEPLARESVRAMMAVRAAGMAAGGTGV ECCCCCCCCCCHHHHHHHHEEEEECCCHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC SLKVFQGLIAAINAGVHPVVPSLGSIGAADLAPLAHMSRGLLGFGEIELGGEVLPAAIAL HHHHHHHHHHHHCCCCCHHCCCCCCCCCHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHH DRAGLKPLEFAPKDGHALVVANSLSIGLACLTLVDIERLFDWSLKAIAISFEAFRANVSA HHCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCHHHHEEEHHHHHCCHHH FDDRALAARPAFGQRRVAAQLMELLSGSSLLTADAARRLQDPLSYRCTPQVWGALRHAID CCCCHHHCCCCCCHHHHHHHHHHHHCCCCEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHH EARQATDIELVSSSDNPVVIASEGVILSHGNFDMTAFVLAWERLGQAMAHCAAGTAYRIM HHHCCCCEEEEECCCCCEEEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH KIMSPGMSDLPRFLTPMGQSRTGFATVQKTVSAMEAEIRHLAMPVSLSPIPVADGVEDQA HHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH SMAPSVLAKAQAIVERLRYLVAIELIASVQAVELRGVSGELGKGSAQAYAFVRTHVPALE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHEEEHHHCCCCCH EDRAQGPDFATIAALIGLGPQ HHHCCCCCHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA