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The map label for this gene is ycdC [C]

Identifier: 116249358

GI number: 116249358

Start: 751851

End: 752483

Strand: Reverse

Name: ycdC [C]

Synonym: pRL120695

Alternate gene names: 116249358

Gene position: 752483-751851 (Counterclockwise)

Preceding gene: 116249366

Following gene: 116249357

Centisome position: 86.49

GC content: 60.03

Gene sequence:

>633_bases
ATGGCAGCTCAGAAGAAGATCACGCGCGCGGAACAGAAAGCGCTGCGGCCCATCCAGATCCTGGATGCCGCCTTCGAGGA
ATTCGTGCGATGCGGTTTCGCGGGCACACGCGTCGAAGACATCGCCGACAGGGTCGGCGTCACCAAGGGTACGGTGTATG
TCTACTTCGAGACGAAGGAGAAGCTTTTCGAAGCCATGATCCACCACTTCTCCGTGCCGTTTCAGGAACTGCTGGGGATC
ACCGAGAGCCTCAGCGGCAGCGCCACCGACCGGCTGATTTCCATTCTCGGCCTGCTCTACGAACAAATCGCCGAGGATCG
CACGACCCGCGAGCTGACGCGGCTCGTCATTGCGGAAGGACACCGGTTCCCCGACCTGATCGACCGCCACCACGATCAGT
TCATTGAGCCGATCATCGCCAAGGTCGACTCTCTCATTCTCGAGGGTGTGGCGTCAGGGGAGTTTCGCGAAGTTCCGGTG
GAATTCTCCGAAATCGTGGTCGCGCCCATCCTGACGACAACAGTTCTGCGGCTGATATTCGACGACCGCCGCGTGCCCAC
TCCCAACAAGGAGGCCTTCCTGCAGGCCTATTTCGACCTGCTGCTCAACGGCCTGCTTGCCAAACCTCACTGA

Upstream 100 bases:

>100_bases
TGCTCTCAACGGCAGCTGCTATATAATTGACTGACCCATTAGTCAATGAAGCTTTGCGCCCGCAGGGACGAGGGCGTGCG
CAACAAGGGAGGCGAGGCAA

Downstream 100 bases:

>100_bases
TGGCCGAATGACGAATAATTCCGCGCCAAACACGTAGATTTTTTGAAGTTTTTATGTAAAAACATCGAGTTAGCTATGCC
TTCGAAGGCACGACCTCAAT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Regulatory Protein TetR; Transcriptional Regulator Tetr Family; TetR Family Regulatory Protein; Transcription Regulator TetR Family; Transcriptional Regulator Protein Tetr/Acrr-Family; Transcriptional Regulator TetR Family Protein; Transcriptional Regulatory Protein; Regulatory Protein Tetr; Transcription Regulator Protein; TetR Family Transcription Regulator Protein; Transcriptional Regulator Protein; TRANSCRIPTIONal REGULATOR PROTEIN TetR/AcrR-Family

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MAAQKKITRAEQKALRPIQILDAAFEEFVRCGFAGTRVEDIADRVGVTKGTVYVYFETKEKLFEAMIHHFSVPFQELLGI
TESLSGSATDRLISILGLLYEQIAEDRTTRELTRLVIAEGHRFPDLIDRHHDQFIEPIIAKVDSLILEGVASGEFREVPV
EFSEIVVAPILTTTVLRLIFDDRRVPTPNKEAFLQAYFDLLLNGLLAKPH

Sequences:

>Translated_210_residues
MAAQKKITRAEQKALRPIQILDAAFEEFVRCGFAGTRVEDIADRVGVTKGTVYVYFETKEKLFEAMIHHFSVPFQELLGI
TESLSGSATDRLISILGLLYEQIAEDRTTRELTRLVIAEGHRFPDLIDRHHDQFIEPIIAKVDSLILEGVASGEFREVPV
EFSEIVVAPILTTTVLRLIFDDRRVPTPNKEAFLQAYFDLLLNGLLAKPH
>Mature_209_residues
AAQKKITRAEQKALRPIQILDAAFEEFVRCGFAGTRVEDIADRVGVTKGTVYVYFETKEKLFEAMIHHFSVPFQELLGIT
ESLSGSATDRLISILGLLYEQIAEDRTTRELTRLVIAEGHRFPDLIDRHHDQFIEPIIAKVDSLILEGVASGEFREVPVE
FSEIVVAPILTTTVLRLIFDDRRVPTPNKEAFLQAYFDLLLNGLLAKPH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23737; Mature: 23606

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAQKKITRAEQKALRPIQILDAAFEEFVRCGFAGTRVEDIADRVGVTKGTVYVYFETKE
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEEECCHH
KLFEAMIHHFSVPFQELLGITESLSGSATDRLISILGLLYEQIAEDRTTRELTRLVIAEG
HHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
HRFPDLIDRHHDQFIEPIIAKVDSLILEGVASGEFREVPVEFSEIVVAPILTTTVLRLIF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHH
DDRRVPTPNKEAFLQAYFDLLLNGLLAKPH
HCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AAQKKITRAEQKALRPIQILDAAFEEFVRCGFAGTRVEDIADRVGVTKGTVYVYFETKE
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEEECCHH
KLFEAMIHHFSVPFQELLGITESLSGSATDRLISILGLLYEQIAEDRTTRELTRLVIAEG
HHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
HRFPDLIDRHHDQFIEPIIAKVDSLILEGVASGEFREVPVEFSEIVVAPILTTTVLRLIF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHH
DDRRVPTPNKEAFLQAYFDLLLNGLLAKPH
HCCCCCCCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA