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The map label for this gene is araQ [H]

Identifier: 116249354

GI number: 116249354

Start: 746609

End: 747655

Strand: Direct

Name: araQ [H]

Synonym: pRL120691

Alternate gene names: 116249354

Gene position: 746609-747655 (Clockwise)

Preceding gene: 116249353

Following gene: 116249356

Centisome position: 85.82

GC content: 60.94

Gene sequence:

>1047_bases
ATGAACCCGATCAGCTTTTTCACGCGCACACGCCGGGCCGGACGCATCGATATAACCGACATATTGTCATGGGTCTGGCT
GATCGGCGGAACCTTCGTGGTGTTGCTTCCGGTCCTCTGGGCGGGCCTCTCCTCGCTGAAGCCGGCCGCCGAGATCACCC
GGTTTCCGCCGACGCTGCTTCCTCGGGCCGCCGTCGAGCAGACCGTGCCCGGCTTCGACAAGCCGCTGAGCCTCTGGAAG
GTTACCGTCGACGGCCAGATGCGCGAAATGGCCATGGTCCGCCGCATCGGCCTCAAGGCCCAGATGGTCGATCCCGCAAA
TCCGGGACCACCCGTCAGCGTCGACGTCAAGGGGATGACGCCGGTGCAGAAGCTGACGGTCGCCACGCAGAATTACACCG
ATCCGCTAACGCGCTTCAACTTCCTGACCTTCCTCAAGAATTCAGTGTTCGTCACCTTCGTCGCAACGCTTCTGACGCTC
ATCGTCAACGCCATGGCGGCCTTCGCCCTGTCAAAATACAAATTTGCAGGGGATACGACGGTCTTCGTCATCATCATTTC
AACGCTGATGATCCCGCTCGCGGTCGTCATGGTGCCGGCCTATCTCGTCATCGTCGGGGTCGGGCTTGCCGATAACCTCT
GGGGCGTCATCCTGCCGACGGTCGCCTCTCCGACCGCCGTCTTCCTGCTGCGGCAATATATGCTGACCATACCCGACGAG
CTGATAGAGGCGGCGCGCGTCGATGCGGCGAGCGAATTCTGCATCTTCTGGCGCATCATCCTGCCGCTGACGGCGCCGGC
GCTCGCGGTGCTGGCGATCTTTTCCGTACTCTGGCGATGGAACGACTTCCTCTGGCCGCTCATCGTCCTCAACAGCCGCG
AGAATTTCACCCTGCAGGTCGGCCTGAATGCATTCCAGGGAGAGTTCTCGGTGCAGTGGCACTATATCCTGGCGATGACG
TTCCTCAGCCTGCTGCCTGTCACCGTCGTCTTCCTGTTCCTGCAGAAATACATCACCACGGGCATCGCCGGAACAGGCAT
GAAATGA

Upstream 100 bases:

>100_bases
CTCTTCGGTCTCGCATCCGCGGCATCGGTTCTCATGGGGCTGGTGCTTCTGGTTCTCACCCTCATACAGCTGCGCGTCGG
CAAGCGAATGGAGTCCTGAG

Downstream 100 bases:

>100_bases
GCGGCAAGGCGTGGAGCTAGACCTCCCCGCAATCGCCGAACGACCCCTACCACGTCTTCCTCCCGGCTGAGGCGCGTCGC
ATTGAACCTGGTTCATGCGG

Product: putative permease component of ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MNPISFFTRTRRAGRIDITDILSWVWLIGGTFVVLLPVLWAGLSSLKPAAEITRFPPTLLPRAAVEQTVPGFDKPLSLWK
VTVDGQMREMAMVRRIGLKAQMVDPANPGPPVSVDVKGMTPVQKLTVATQNYTDPLTRFNFLTFLKNSVFVTFVATLLTL
IVNAMAAFALSKYKFAGDTTVFVIIISTLMIPLAVVMVPAYLVIVGVGLADNLWGVILPTVASPTAVFLLRQYMLTIPDE
LIEAARVDAASEFCIFWRIILPLTAPALAVLAIFSVLWRWNDFLWPLIVLNSRENFTLQVGLNAFQGEFSVQWHYILAMT
FLSLLPVTVVFLFLQKYITTGIAGTGMK

Sequences:

>Translated_348_residues
MNPISFFTRTRRAGRIDITDILSWVWLIGGTFVVLLPVLWAGLSSLKPAAEITRFPPTLLPRAAVEQTVPGFDKPLSLWK
VTVDGQMREMAMVRRIGLKAQMVDPANPGPPVSVDVKGMTPVQKLTVATQNYTDPLTRFNFLTFLKNSVFVTFVATLLTL
IVNAMAAFALSKYKFAGDTTVFVIIISTLMIPLAVVMVPAYLVIVGVGLADNLWGVILPTVASPTAVFLLRQYMLTIPDE
LIEAARVDAASEFCIFWRIILPLTAPALAVLAIFSVLWRWNDFLWPLIVLNSRENFTLQVGLNAFQGEFSVQWHYILAMT
FLSLLPVTVVFLFLQKYITTGIAGTGMK
>Mature_348_residues
MNPISFFTRTRRAGRIDITDILSWVWLIGGTFVVLLPVLWAGLSSLKPAAEITRFPPTLLPRAAVEQTVPGFDKPLSLWK
VTVDGQMREMAMVRRIGLKAQMVDPANPGPPVSVDVKGMTPVQKLTVATQNYTDPLTRFNFLTFLKNSVFVTFVATLLTL
IVNAMAAFALSKYKFAGDTTVFVIIISTLMIPLAVVMVPAYLVIVGVGLADNLWGVILPTVASPTAVFLLRQYMLTIPDE
LIEAARVDAASEFCIFWRIILPLTAPALAVLAIFSVLWRWNDFLWPLIVLNSRENFTLQVGLNAFQGEFSVQWHYILAMT
FLSLLPVTVVFLFLQKYITTGIAGTGMK

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=207, Percent_Identity=34.2995169082126, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1787571, Length=224, Percent_Identity=31.6964285714286, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1790464, Length=217, Percent_Identity=26.7281105990783, Blast_Score=71, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 38571; Mature: 38571

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPISFFTRTRRAGRIDITDILSWVWLIGGTFVVLLPVLWAGLSSLKPAAEITRFPPTLL
CCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHC
PRAAVEQTVPGFDKPLSLWKVTVDGQMREMAMVRRIGLKAQMVDPANPGPPVSVDVKGMT
CHHHHHHCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCEEECCCCCCCCCEEEEECCCC
PVQKLTVATQNYTDPLTRFNFLTFLKNSVFVTFVATLLTLIVNAMAAFALSKYKFAGDTT
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
VFVIIISTLMIPLAVVMVPAYLVIVGVGLADNLWGVILPTVASPTAVFLLRQYMLTIPDE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHH
LIEAARVDAASEFCIFWRIILPLTAPALAVLAIFSVLWRWNDFLWPLIVLNSRENFTLQV
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEE
GLNAFQGEFSVQWHYILAMTFLSLLPVTVVFLFLQKYITTGIAGTGMK
CCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNPISFFTRTRRAGRIDITDILSWVWLIGGTFVVLLPVLWAGLSSLKPAAEITRFPPTLL
CCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHC
PRAAVEQTVPGFDKPLSLWKVTVDGQMREMAMVRRIGLKAQMVDPANPGPPVSVDVKGMT
CHHHHHHCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCEEECCCCCCCCCEEEEECCCC
PVQKLTVATQNYTDPLTRFNFLTFLKNSVFVTFVATLLTLIVNAMAAFALSKYKFAGDTT
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
VFVIIISTLMIPLAVVMVPAYLVIVGVGLADNLWGVILPTVASPTAVFLLRQYMLTIPDE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHH
LIEAARVDAASEFCIFWRIILPLTAPALAVLAIFSVLWRWNDFLWPLIVLNSRENFTLQV
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEE
GLNAFQGEFSVQWHYILAMTFLSLLPVTVVFLFLQKYITTGIAGTGMK
CCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]