Definition Rhizobium leguminosarum bv. viciae 3841 plasmid pRL12, complete sequence.
Accession NC_008378
Length 870,021

Click here to switch to the map view.

The map label for this gene is 116249314

Identifier: 116249314

GI number: 116249314

Start: 703962

End: 704606

Strand: Direct

Name: 116249314

Synonym: pRL120651

Alternate gene names: NA

Gene position: 703962-704606 (Clockwise)

Preceding gene: 116249311

Following gene: 116249315

Centisome position: 80.91

GC content: 52.25

Gene sequence:

>645_bases
GTGCCAAGACCTACTTTTCCCGACACGCGAACGTTGCAGATGCCGGACTCATCATTCAAAGTGGAACCAAAGGGGACGAT
TATGGGCATTGGCGGTTGGTTCAGAGGCGACAGGGGCAAGGATAGAGATGACCAAGGCGTTACGGTCGAGCTGACACCAA
TCGGAGGACCGCCCGAGCTAGACTTCCTTTTCATCGAAGTTCCGGCGGTCGATATCCTTAGGGCAATCGATGGATGGAAA
TGGCTGTCTCTGGTGGGTCTGACCGTTATCGCGGTGTCGGCATTTGGCGAGGTATTTCTCCGCGACGGGACTGGTGCTGT
CTTTCAAATCGACACGATTGAAGGAAAGCTCTCGAAGGTAGCCAACTCAATCCGTGAGCTGACCGCTATGCTTCAGAATT
CGGAGGCAAGAGACGAGCTTTTGTTTGGGGGACTGGTAATCGGCGCTCGCAACAGAGGGCTGATTCTCGAACCCGGTGAA
TGTTACGATTTCAAAATCGCCCCGATTTTGGGCGGACAAATGAGCGTTGATGAAATTGAGAAGCTTTCGTTCACAGTGAA
GCTTCACATTGCGGGCCAGCTCCACGAACAGGTCAAAGATGTTCCCCCTGGAACCACAATCGATCAAGTAACTATTTCGT
CTTGA

Upstream 100 bases:

>100_bases
CCTCGGAAAACTACTTCCCTGGAACTGGCAGTCTCAAGAAAACGCGCTGGCTGCCTGATCTCTGCATGGCAGCTAGGCTG
AATGGTAGACCATACCACTT

Downstream 100 bases:

>100_bases
AGTCCACTCTCGATGAATTTTTCTTTAGCCCCTCAATGCATTCGCAAAGAACAGCCATTCCGCCAAGCCATGTCACTCGC
GGCCTTCACCGGATGGCTAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 214; Mature: 213

Protein sequence:

>214_residues
MPRPTFPDTRTLQMPDSSFKVEPKGTIMGIGGWFRGDRGKDRDDQGVTVELTPIGGPPELDFLFIEVPAVDILRAIDGWK
WLSLVGLTVIAVSAFGEVFLRDGTGAVFQIDTIEGKLSKVANSIRELTAMLQNSEARDELLFGGLVIGARNRGLILEPGE
CYDFKIAPILGGQMSVDEIEKLSFTVKLHIAGQLHEQVKDVPPGTTIDQVTISS

Sequences:

>Translated_214_residues
MPRPTFPDTRTLQMPDSSFKVEPKGTIMGIGGWFRGDRGKDRDDQGVTVELTPIGGPPELDFLFIEVPAVDILRAIDGWK
WLSLVGLTVIAVSAFGEVFLRDGTGAVFQIDTIEGKLSKVANSIRELTAMLQNSEARDELLFGGLVIGARNRGLILEPGE
CYDFKIAPILGGQMSVDEIEKLSFTVKLHIAGQLHEQVKDVPPGTTIDQVTISS
>Mature_213_residues
PRPTFPDTRTLQMPDSSFKVEPKGTIMGIGGWFRGDRGKDRDDQGVTVELTPIGGPPELDFLFIEVPAVDILRAIDGWKW
LSLVGLTVIAVSAFGEVFLRDGTGAVFQIDTIEGKLSKVANSIRELTAMLQNSEARDELLFGGLVIGARNRGLILEPGEC
YDFKIAPILGGQMSVDEIEKLSFTVKLHIAGQLHEQVKDVPPGTTIDQVTISS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23294; Mature: 23163

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRPTFPDTRTLQMPDSSFKVEPKGTIMGIGGWFRGDRGKDRDDQGVTVELTPIGGPPEL
CCCCCCCCCEEEECCCCCEEECCCCEEEEECCEECCCCCCCCCCCCCEEEEEECCCCCCC
DFLFIEVPAVDILRAIDGWKWLSLVGLTVIAVSAFGEVFLRDGTGAVFQIDTIEGKLSKV
EEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHCEEEEECCCCCEEEEECCCHHHHHH
ANSIRELTAMLQNSEARDELLFGGLVIGARNRGLILEPGECYDFKIAPILGGQMSVDEIE
HHHHHHHHHHHHCCCCHHHEEECEEEEECCCCCEEECCCCCCEEEEEEEECCCCCHHHHH
KLSFTVKLHIAGQLHEQVKDVPPGTTIDQVTISS
HEEEEEEEEECHHHHHHHHCCCCCCCCCEEEECC
>Mature Secondary Structure 
PRPTFPDTRTLQMPDSSFKVEPKGTIMGIGGWFRGDRGKDRDDQGVTVELTPIGGPPEL
CCCCCCCCEEEECCCCCEEECCCCEEEEECCEECCCCCCCCCCCCCEEEEEECCCCCCC
DFLFIEVPAVDILRAIDGWKWLSLVGLTVIAVSAFGEVFLRDGTGAVFQIDTIEGKLSKV
EEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHCEEEEECCCCCEEEEECCCHHHHHH
ANSIRELTAMLQNSEARDELLFGGLVIGARNRGLILEPGECYDFKIAPILGGQMSVDEIE
HHHHHHHHHHHHCCCCHHHEEECEEEEECCCCCEEECCCCCCEEEEEEEECCCCCHHHHH
KLSFTVKLHIAGQLHEQVKDVPPGTTIDQVTISS
HEEEEEEEEECHHHHHHHHCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA