| Definition | Rhizobium leguminosarum bv. viciae 3841 plasmid pRL12, complete sequence. |
|---|---|
| Accession | NC_008378 |
| Length | 870,021 |
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The map label for this gene is 116249314
Identifier: 116249314
GI number: 116249314
Start: 703962
End: 704606
Strand: Direct
Name: 116249314
Synonym: pRL120651
Alternate gene names: NA
Gene position: 703962-704606 (Clockwise)
Preceding gene: 116249311
Following gene: 116249315
Centisome position: 80.91
GC content: 52.25
Gene sequence:
>645_bases GTGCCAAGACCTACTTTTCCCGACACGCGAACGTTGCAGATGCCGGACTCATCATTCAAAGTGGAACCAAAGGGGACGAT TATGGGCATTGGCGGTTGGTTCAGAGGCGACAGGGGCAAGGATAGAGATGACCAAGGCGTTACGGTCGAGCTGACACCAA TCGGAGGACCGCCCGAGCTAGACTTCCTTTTCATCGAAGTTCCGGCGGTCGATATCCTTAGGGCAATCGATGGATGGAAA TGGCTGTCTCTGGTGGGTCTGACCGTTATCGCGGTGTCGGCATTTGGCGAGGTATTTCTCCGCGACGGGACTGGTGCTGT CTTTCAAATCGACACGATTGAAGGAAAGCTCTCGAAGGTAGCCAACTCAATCCGTGAGCTGACCGCTATGCTTCAGAATT CGGAGGCAAGAGACGAGCTTTTGTTTGGGGGACTGGTAATCGGCGCTCGCAACAGAGGGCTGATTCTCGAACCCGGTGAA TGTTACGATTTCAAAATCGCCCCGATTTTGGGCGGACAAATGAGCGTTGATGAAATTGAGAAGCTTTCGTTCACAGTGAA GCTTCACATTGCGGGCCAGCTCCACGAACAGGTCAAAGATGTTCCCCCTGGAACCACAATCGATCAAGTAACTATTTCGT CTTGA
Upstream 100 bases:
>100_bases CCTCGGAAAACTACTTCCCTGGAACTGGCAGTCTCAAGAAAACGCGCTGGCTGCCTGATCTCTGCATGGCAGCTAGGCTG AATGGTAGACCATACCACTT
Downstream 100 bases:
>100_bases AGTCCACTCTCGATGAATTTTTCTTTAGCCCCTCAATGCATTCGCAAAGAACAGCCATTCCGCCAAGCCATGTCACTCGC GGCCTTCACCGGATGGCTAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 214; Mature: 213
Protein sequence:
>214_residues MPRPTFPDTRTLQMPDSSFKVEPKGTIMGIGGWFRGDRGKDRDDQGVTVELTPIGGPPELDFLFIEVPAVDILRAIDGWK WLSLVGLTVIAVSAFGEVFLRDGTGAVFQIDTIEGKLSKVANSIRELTAMLQNSEARDELLFGGLVIGARNRGLILEPGE CYDFKIAPILGGQMSVDEIEKLSFTVKLHIAGQLHEQVKDVPPGTTIDQVTISS
Sequences:
>Translated_214_residues MPRPTFPDTRTLQMPDSSFKVEPKGTIMGIGGWFRGDRGKDRDDQGVTVELTPIGGPPELDFLFIEVPAVDILRAIDGWK WLSLVGLTVIAVSAFGEVFLRDGTGAVFQIDTIEGKLSKVANSIRELTAMLQNSEARDELLFGGLVIGARNRGLILEPGE CYDFKIAPILGGQMSVDEIEKLSFTVKLHIAGQLHEQVKDVPPGTTIDQVTISS >Mature_213_residues PRPTFPDTRTLQMPDSSFKVEPKGTIMGIGGWFRGDRGKDRDDQGVTVELTPIGGPPELDFLFIEVPAVDILRAIDGWKW LSLVGLTVIAVSAFGEVFLRDGTGAVFQIDTIEGKLSKVANSIRELTAMLQNSEARDELLFGGLVIGARNRGLILEPGEC YDFKIAPILGGQMSVDEIEKLSFTVKLHIAGQLHEQVKDVPPGTTIDQVTISS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23294; Mature: 23163
Theoretical pI: Translated: 4.52; Mature: 4.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRPTFPDTRTLQMPDSSFKVEPKGTIMGIGGWFRGDRGKDRDDQGVTVELTPIGGPPEL CCCCCCCCCEEEECCCCCEEECCCCEEEEECCEECCCCCCCCCCCCCEEEEEECCCCCCC DFLFIEVPAVDILRAIDGWKWLSLVGLTVIAVSAFGEVFLRDGTGAVFQIDTIEGKLSKV EEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHCEEEEECCCCCEEEEECCCHHHHHH ANSIRELTAMLQNSEARDELLFGGLVIGARNRGLILEPGECYDFKIAPILGGQMSVDEIE HHHHHHHHHHHHCCCCHHHEEECEEEEECCCCCEEECCCCCCEEEEEEEECCCCCHHHHH KLSFTVKLHIAGQLHEQVKDVPPGTTIDQVTISS HEEEEEEEEECHHHHHHHHCCCCCCCCCEEEECC >Mature Secondary Structure PRPTFPDTRTLQMPDSSFKVEPKGTIMGIGGWFRGDRGKDRDDQGVTVELTPIGGPPEL CCCCCCCCEEEECCCCCEEECCCCEEEEECCEECCCCCCCCCCCCCEEEEEECCCCCCC DFLFIEVPAVDILRAIDGWKWLSLVGLTVIAVSAFGEVFLRDGTGAVFQIDTIEGKLSKV EEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHCEEEEECCCCCEEEEECCCHHHHHH ANSIRELTAMLQNSEARDELLFGGLVIGARNRGLILEPGECYDFKIAPILGGQMSVDEIE HHHHHHHHHHHHCCCCHHHEEECEEEEECCCCCEEECCCCCCEEEEEEEECCCCCHHHHH KLSFTVKLHIAGQLHEQVKDVPPGTTIDQVTISS HEEEEEEEEECHHHHHHHHCCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA