Click here to switch to the map view.

The map label for this gene is 116249261

Identifier: 116249261

GI number: 116249261

Start: 647983

End: 648825

Strand: Direct

Name: 116249261

Synonym: pRL120596

Alternate gene names: NA

Gene position: 647983-648825 (Clockwise)

Preceding gene: 116249260

Following gene: 116249262

Centisome position: 74.48

GC content: 64.18

Gene sequence:

>843_bases
ATGCCAGCCATACCGCGCAAGACCATCCTCGAAAAATTTCACGGCATGATCGCAGCCGGCGTGCCGATCGTCGGCGGCGG
CGCCGGCACCGGCATCTCCGCCAAGGCCGAGGAGGCTGGCGGCATCGACCTCATCATTATCTACAATTCCGGGCGCTACC
GCATGGCGGGGCGCGGTTCGGCGGCCGGACTGCTGGCCTATGGCAATGCCAACGAGATCGTCAAGGACATGGCGCTTGAA
GTGTTGCCGGTCGTGAAAAAGACGCCGGTTCTCGCCGGCGTCAACGGCACGGACCCCTTCGTGCTGATGCCGCGCTTCCT
CGCCGACCTCAAGGCAATGGGCTTTTCCGGCGTACAGAACTTCCCCACAATCGGCCTCTTCGATGGCCGGATGCGGCAGA
GTTTCGAGGAGACCGGCATGAGCTACAATCTGGAGGTCGAGATGATCGCCACCGCCCACGGGCTCGACCTGCTGACGACA
CCCTATGTCTTCAACGAGAGCGAGGCTGTCGCCATGACCGTCGCCGGCGCCGACATCATCGTGGCGCATATGGGCGTGAC
GACCGGCGGCACGATCGGGGCCACCTCCGGCAAGTCCCTCGATGACTGCGTCGATGAGATCACCGCGATCACCAAGGCGG
CACGTTCCGTGCGCGACGATGTCATCGTGCTCTGCCATGGCGGCCCGATCTCCATGCCGGAGGATGCGCGCTACGTTCTC
GAGCGTTGCCCTGGCTGCCACGGCTTTTATGGCGCAAGCTCGATGGAGCGCCTGCCGGCAGAGGCGGCAATCCGCAAGCA
GACGGAAGATTTCAAGGCGCTCGCGATCGGCGCGGTCGTCTGA

Upstream 100 bases:

>100_bases
GACGTATTATTCGCCTGCCGCTCCATATCAACGACCCGCACTTCGCCGAGGCCGCCGTCGCGGCCTATCGTGAGATCGCC
AACCCCTGAGAGACAAATCG

Downstream 100 bases:

>100_bases
GGAAGGATGTGGAGGAGGCGGTTTCATGGTAAAGGACAAGTACTTCATCTATCCGAAGGATGTGAGCGCCTTCGGCTTCG
ACTGGGGCAAGCTGTCGCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MPAIPRKTILEKFHGMIAAGVPIVGGGAGTGISAKAEEAGGIDLIIIYNSGRYRMAGRGSAAGLLAYGNANEIVKDMALE
VLPVVKKTPVLAGVNGTDPFVLMPRFLADLKAMGFSGVQNFPTIGLFDGRMRQSFEETGMSYNLEVEMIATAHGLDLLTT
PYVFNESEAVAMTVAGADIIVAHMGVTTGGTIGATSGKSLDDCVDEITAITKAARSVRDDVIVLCHGGPISMPEDARYVL
ERCPGCHGFYGASSMERLPAEAAIRKQTEDFKALAIGAVV

Sequences:

>Translated_280_residues
MPAIPRKTILEKFHGMIAAGVPIVGGGAGTGISAKAEEAGGIDLIIIYNSGRYRMAGRGSAAGLLAYGNANEIVKDMALE
VLPVVKKTPVLAGVNGTDPFVLMPRFLADLKAMGFSGVQNFPTIGLFDGRMRQSFEETGMSYNLEVEMIATAHGLDLLTT
PYVFNESEAVAMTVAGADIIVAHMGVTTGGTIGATSGKSLDDCVDEITAITKAARSVRDDVIVLCHGGPISMPEDARYVL
ERCPGCHGFYGASSMERLPAEAAIRKQTEDFKALAIGAVV
>Mature_279_residues
PAIPRKTILEKFHGMIAAGVPIVGGGAGTGISAKAEEAGGIDLIIIYNSGRYRMAGRGSAAGLLAYGNANEIVKDMALEV
LPVVKKTPVLAGVNGTDPFVLMPRFLADLKAMGFSGVQNFPTIGLFDGRMRQSFEETGMSYNLEVEMIATAHGLDLLTTP
YVFNESEAVAMTVAGADIIVAHMGVTTGGTIGATSGKSLDDCVDEITAITKAARSVRDDVIVLCHGGPISMPEDARYVLE
RCPGCHGFYGASSMERLPAEAAIRKQTEDFKALAIGAVV

Specific function: Unknown

COG id: COG5564

COG function: function code R; Predicted TIM-barrel enzyme, possibly a dioxygenase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR009215 [H]

Pfam domain/function: PF09370 TIM-br_sig_trns [H]

EC number: NA

Molecular weight: Translated: 29326; Mature: 29195

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAIPRKTILEKFHGMIAAGVPIVGGGAGTGISAKAEEAGGIDLIIIYNSGRYRMAGRGS
CCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCEEEECCCCC
AAGLLAYGNANEIVKDMALEVLPVVKKTPVLAGVNGTDPFVLMPRFLADLKAMGFSGVQN
CCEEEEECCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEHHHHHHHHHHHCCCCCCC
FPTIGLFDGRMRQSFEETGMSYNLEVEMIATAHGLDLLTTPYVFNESEAVAMTVAGADII
CCEEEEECCHHHHHHHHCCCEEEEEEEEEEEECCCCCEECCEEECCCCEEEEEEECCEEE
VAHMGVTTGGTIGATSGKSLDDCVDEITAITKAARSVRDDVIVLCHGGPISMPEDARYVL
EEECCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHH
ERCPGCHGFYGASSMERLPAEAAIRKQTEDFKALAIGAVV
HHCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHEEEECC
>Mature Secondary Structure 
PAIPRKTILEKFHGMIAAGVPIVGGGAGTGISAKAEEAGGIDLIIIYNSGRYRMAGRGS
CCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCEEEECCCCC
AAGLLAYGNANEIVKDMALEVLPVVKKTPVLAGVNGTDPFVLMPRFLADLKAMGFSGVQN
CCEEEEECCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEHHHHHHHHHHHCCCCCCC
FPTIGLFDGRMRQSFEETGMSYNLEVEMIATAHGLDLLTTPYVFNESEAVAMTVAGADII
CCEEEEECCHHHHHHHHCCCEEEEEEEEEEEECCCCCEECCEEECCCCEEEEEEECCEEE
VAHMGVTTGGTIGATSGKSLDDCVDEITAITKAARSVRDDVIVLCHGGPISMPEDARYVL
EEECCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHH
ERCPGCHGFYGASSMERLPAEAAIRKQTEDFKALAIGAVV
HHCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]