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The map label for this gene is 116249260

Identifier: 116249260

GI number: 116249260

Start: 646775

End: 647971

Strand: Direct

Name: 116249260

Synonym: pRL120595

Alternate gene names: NA

Gene position: 646775-647971 (Clockwise)

Preceding gene: 116249253

Following gene: 116249261

Centisome position: 74.34

GC content: 65.91

Gene sequence:

>1197_bases
ATGAAGCAGATCTACGTGGTCGGCACGGCCGACACGAAGGGCGAGGAGCTTGCGTATCTGGCCGCTTGCATCGAAGCGGC
GGGCGGGGGTGTTGTCCGCGTCGACGTCGGCATAGGCGAGCCTGCGACCGCCGTCGATGTGAAGGCCGACGCAGTGGCGG
CGTGCCATCCGGACGGGGCGGAAGCCGTTCTTGCCAGCGGGGACCGCGGAACGGCGGTCGAGGCGATGGGCGTTGCCTTC
GCGCGCTTCCTCGTGGAGCGCCGGGACATCGCCGGCGTCATCGGTATCGGTGGGGGCGGGGGCACTTCGATCATCACCGC
AGGCATGCGCCAATTGCCGCTCGGTCTGCCAAAGATCATGGTCTCGACGCTCGCATCCGGCGACGTCGCTCCCTATGTCG
ATGTTTCCGACATCGTGATGATGCCCTCGGTCACGGACATGGCGGGCCTGAACCGGCTGAGCCGCGTCATCCTTCACAAC
GCCGCCCAGGCGATCACCGCCATGGCCAGCCGGCCGGCTGAGGTGACGGCATCGAAACCGGCCCTCGGGCTTACCATGTT
CGGCGTTACCACACCTGCCGTATCCGCCATGGTCGAGCGCCTCCGAGCGGACTATGATTGCCTGGTCTTCCACGCCACAG
GCACGGGTGGGCGGGCGATGGAGAAGCTTGCCGACAGCGAACTGGTCTCAGGCGTGCTCGACATCACGACGACCGAGGTC
TGCGACCTGCTTTTTGGCGGCGTCCTGCCTGCCACCTCGGACCGTTTTGGCGCCATTGCTCGCACGGGCTTGCCCTATGT
CGGCTCGGTCGGTGCGCTGGACATGGTGAACTTCTGGGCGCCGGAGACCGTCCCGGAGCGTTATGCCGGCCGGCTTTTTT
ACCGCCACAACCCGAACGTCACCTTGATGCGCACGACGCCGGCCGAATGTGCGCAGATTGGCCGCTGGATCGGCGACAAG
CTCAATCTCTGCCACGGCCCCCTACGCTTCCTCATTCCCGAAAAGGGCGTTTCGGCCCTCGACATCGAAGGCGGTCCGTT
CTTCGATCCGCAAGCCGACGCCGCGCTTTTTGCCGCGCTCGAGGCGACGGTGAAGCCGACGGCATCGCGACGTATTATTC
GCCTGCCGCTCCATATCAACGACCCGCACTTCGCCGAGGCCGCCGTCGCGGCCTATCGTGAGATCGCCAACCCCTGA

Upstream 100 bases:

>100_bases
GTCTTTATGATACGCACGTCTCACAATTTTGCAAGGGCCCGTCGCTTTGCCCCGAACGTGAGATATGCCGGGAGGAAATC
CACCCGGTCGCGGAGGGGAA

Downstream 100 bases:

>100_bases
GAGACAAATCGATGCCAGCCATACCGCGCAAGACCATCCTCGAAAAATTTCACGGCATGATCGCAGCCGGCGTGCCGATC
GTCGGCGGCGGCGCCGGCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 398; Mature: 398

Protein sequence:

>398_residues
MKQIYVVGTADTKGEELAYLAACIEAAGGGVVRVDVGIGEPATAVDVKADAVAACHPDGAEAVLASGDRGTAVEAMGVAF
ARFLVERRDIAGVIGIGGGGGTSIITAGMRQLPLGLPKIMVSTLASGDVAPYVDVSDIVMMPSVTDMAGLNRLSRVILHN
AAQAITAMASRPAEVTASKPALGLTMFGVTTPAVSAMVERLRADYDCLVFHATGTGGRAMEKLADSELVSGVLDITTTEV
CDLLFGGVLPATSDRFGAIARTGLPYVGSVGALDMVNFWAPETVPERYAGRLFYRHNPNVTLMRTTPAECAQIGRWIGDK
LNLCHGPLRFLIPEKGVSALDIEGGPFFDPQADAALFAALEATVKPTASRRIIRLPLHINDPHFAEAAVAAYREIANP

Sequences:

>Translated_398_residues
MKQIYVVGTADTKGEELAYLAACIEAAGGGVVRVDVGIGEPATAVDVKADAVAACHPDGAEAVLASGDRGTAVEAMGVAF
ARFLVERRDIAGVIGIGGGGGTSIITAGMRQLPLGLPKIMVSTLASGDVAPYVDVSDIVMMPSVTDMAGLNRLSRVILHN
AAQAITAMASRPAEVTASKPALGLTMFGVTTPAVSAMVERLRADYDCLVFHATGTGGRAMEKLADSELVSGVLDITTTEV
CDLLFGGVLPATSDRFGAIARTGLPYVGSVGALDMVNFWAPETVPERYAGRLFYRHNPNVTLMRTTPAECAQIGRWIGDK
LNLCHGPLRFLIPEKGVSALDIEGGPFFDPQADAALFAALEATVKPTASRRIIRLPLHINDPHFAEAAVAAYREIANP
>Mature_398_residues
MKQIYVVGTADTKGEELAYLAACIEAAGGGVVRVDVGIGEPATAVDVKADAVAACHPDGAEAVLASGDRGTAVEAMGVAF
ARFLVERRDIAGVIGIGGGGGTSIITAGMRQLPLGLPKIMVSTLASGDVAPYVDVSDIVMMPSVTDMAGLNRLSRVILHN
AAQAITAMASRPAEVTASKPALGLTMFGVTTPAVSAMVERLRADYDCLVFHATGTGGRAMEKLADSELVSGVLDITTTEV
CDLLFGGVLPATSDRFGAIARTGLPYVGSVGALDMVNFWAPETVPERYAGRLFYRHNPNVTLMRTTPAECAQIGRWIGDK
LNLCHGPLRFLIPEKGVSALDIEGGPFFDPQADAALFAALEATVKPTASRRIIRLPLHINDPHFAEAAVAAYREIANP

Specific function: Unknown

COG id: COG5441

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0261 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008322 [H]

Pfam domain/function: PF06792 UPF0261 [H]

EC number: NA

Molecular weight: Translated: 41542; Mature: 41542

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: PS00290 IG_MHC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQIYVVGTADTKGEELAYLAACIEAAGGGVVRVDVGIGEPATAVDVKADAVAACHPDGA
CCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEECCCEEEEECCCCC
EAVLASGDRGTAVEAMGVAFARFLVERRDIAGVIGIGGGGGTSIITAGMRQLPLGLPKIM
CEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCCHHHH
VSTLASGDVAPYVDVSDIVMMPSVTDMAGLNRLSRVILHNAAQAITAMASRPAEVTASKP
HHHHCCCCCCCCCCHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
ALGLTMFGVTTPAVSAMVERLRADYDCLVFHATGTGGRAMEKLADSELVSGVLDITTTEV
CCEEEEECCCHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
CDLLFGGVLPATSDRFGAIARTGLPYVGSVGALDMVNFWAPETVPERYAGRLFYRHNPNV
HHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCHHHHHCEEEEEECCCE
TLMRTTPAECAQIGRWIGDKLNLCHGPLRFLIPEKGVSALDIEGGPFFDPQADAALFAAL
EEEECCHHHHHHHHHHHCCHHHCCCCCCEEEECCCCCCEEECCCCCCCCCCCHHHHHHHH
EATVKPTASRRIIRLPLHINDPHFAEAAVAAYREIANP
HHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKQIYVVGTADTKGEELAYLAACIEAAGGGVVRVDVGIGEPATAVDVKADAVAACHPDGA
CCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEECCCEEEEECCCCC
EAVLASGDRGTAVEAMGVAFARFLVERRDIAGVIGIGGGGGTSIITAGMRQLPLGLPKIM
CEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCCHHHH
VSTLASGDVAPYVDVSDIVMMPSVTDMAGLNRLSRVILHNAAQAITAMASRPAEVTASKP
HHHHCCCCCCCCCCHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
ALGLTMFGVTTPAVSAMVERLRADYDCLVFHATGTGGRAMEKLADSELVSGVLDITTTEV
CCEEEEECCCHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
CDLLFGGVLPATSDRFGAIARTGLPYVGSVGALDMVNFWAPETVPERYAGRLFYRHNPNV
HHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCHHHHHCEEEEEECCCE
TLMRTTPAECAQIGRWIGDKLNLCHGPLRFLIPEKGVSALDIEGGPFFDPQADAALFAAL
EEEECCHHHHHHHHHHHCCHHHCCCCCCEEEECCCCCCEEECCCCCCCCCCCHHHHHHHH
EATVKPTASRRIIRLPLHINDPHFAEAAVAAYREIANP
HHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]