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The map label for this gene is opdE [H]

Identifier: 116249211

GI number: 116249211

Start: 594479

End: 595666

Strand: Reverse

Name: opdE [H]

Synonym: pRL120547

Alternate gene names: 116249211

Gene position: 595666-594479 (Counterclockwise)

Preceding gene: 116249213

Following gene: 116249210

Centisome position: 68.47

GC content: 61.62

Gene sequence:

>1188_bases
ATGACCGTCGAATTGACATTGAATGAGACCTCACTGACGGACGACACGGCGACCTCGTGGTCTGCTGTGACCTGTCTCTC
GCTTCTCACGTTCCTTCTGGTGGGATTGGAATTTCTTCCTGTGAGCCTTCTGACCCCGATCGCCAGGGACCTCTCTGTGT
CAGAGGGGCAAGCCGGATTGGCGATCACCGTATCGGGAGTCTTTGCGGTCATCACCAGCCTTTTCGGCAATGCCTTCCTG
GCGAGGATCGACCGGAAGTCTGTCGTCCTGCTTTATACGGCGGTTCTTGTCGCATCGAGCCTGGCGGTTGCCCTCGCACC
CAACTTCCCTGTCTTTCTCGTCGGGCGGTCCCTGGTCGGCGTTTCGATCGGCGGCTTCTGGTCGCTGTCGACGGCTATTC
TGGCACGCCTGGCTTCAGACCGTGACCTGCCCAAGGCCATTGCGCTTCTTCAAGGCGGCACCGCATTCGCCCTCGTCCTT
GCCGCGCCGCTCGGGAGTTTTCTGGGCGGGTTGATCGGATGGCGGGGCACATTCTTCATTACGGTGCCGATCGGAATAGC
AGCGCTCGTCTGGCAACTGGTGGTCCTGCCGAGGATGCCGGCGACATCCACCGCGTCGGTGGCCAGAATATTCGGGCTGC
TGCGCAATCGCACATTCGCGATAGGAATGGCGGCGACCGGTCTCGCCTTCATCGGCCAGAACGCTCTGTCTATTTATCTT
CGCCCGTTCCTCGAAGGCGTCACGGGACTGGAATTGAATGTTCTGTCCATGGTGCTTCTCGGCCTTGGCGTCGGCGGACT
GGCTGGAACCTCCGTCATTGGCTTCATCCCCCGGCGCCACCTCCTCCTGGTTCTCGTGGGACTGCCGGCTGCTCTTGCGG
TCCTTGCCCTGCTGCTGATCGCTCTCGGGCCGTTCGCGGCGGTTACGGCATCCCTGCTCGTCATGTGGGGATTTTTCTCG
ACGCCGCTTCCGGTCGCCTGGAATACCTGGATGGCCGCTATCGTTCCTGGTGAGTTGGAAGCGGCAGGTGGACTGCAAGT
GGCGTTGATCCAATTGGCCATTGCAGGCGGTGCTTTCGCTGGCGGCATGCTCTTCGACACCGCGGGATGGTGGAGCACCT
TCCTTCTGGCCGCCTGCCTTCTCGCCGGTTCGGCTGTCCTCGCCGCGCTCGCCAGTCGCCTTTCCTGA

Upstream 100 bases:

>100_bases
CCGCATTGTTGAATCTCCTTCATCACGACGTTCAGATTATAGCTTCTAGTCGCGCAAAACCAGTCCGGCTATCTATCGGG
CAGCGGACAGGAGCACATGC

Downstream 100 bases:

>100_bases
ACCTTCAGAAACCTCAAAACAGGAGATCATCACATGTCCCAAGGAATTGAAAACAAAGTGGTCGTCATCACCGGGGCAAG
CAGCGGGCTTGGCGAAGCCA

Product: MFS family transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 394

Protein sequence:

>395_residues
MTVELTLNETSLTDDTATSWSAVTCLSLLTFLLVGLEFLPVSLLTPIARDLSVSEGQAGLAITVSGVFAVITSLFGNAFL
ARIDRKSVVLLYTAVLVASSLAVALAPNFPVFLVGRSLVGVSIGGFWSLSTAILARLASDRDLPKAIALLQGGTAFALVL
AAPLGSFLGGLIGWRGTFFITVPIGIAALVWQLVVLPRMPATSTASVARIFGLLRNRTFAIGMAATGLAFIGQNALSIYL
RPFLEGVTGLELNVLSMVLLGLGVGGLAGTSVIGFIPRRHLLLVLVGLPAALAVLALLLIALGPFAAVTASLLVMWGFFS
TPLPVAWNTWMAAIVPGELEAAGGLQVALIQLAIAGGAFAGGMLFDTAGWWSTFLLAACLLAGSAVLAALASRLS

Sequences:

>Translated_395_residues
MTVELTLNETSLTDDTATSWSAVTCLSLLTFLLVGLEFLPVSLLTPIARDLSVSEGQAGLAITVSGVFAVITSLFGNAFL
ARIDRKSVVLLYTAVLVASSLAVALAPNFPVFLVGRSLVGVSIGGFWSLSTAILARLASDRDLPKAIALLQGGTAFALVL
AAPLGSFLGGLIGWRGTFFITVPIGIAALVWQLVVLPRMPATSTASVARIFGLLRNRTFAIGMAATGLAFIGQNALSIYL
RPFLEGVTGLELNVLSMVLLGLGVGGLAGTSVIGFIPRRHLLLVLVGLPAALAVLALLLIALGPFAAVTASLLVMWGFFS
TPLPVAWNTWMAAIVPGELEAAGGLQVALIQLAIAGGAFAGGMLFDTAGWWSTFLLAACLLAGSAVLAALASRLS
>Mature_394_residues
TVELTLNETSLTDDTATSWSAVTCLSLLTFLLVGLEFLPVSLLTPIARDLSVSEGQAGLAITVSGVFAVITSLFGNAFLA
RIDRKSVVLLYTAVLVASSLAVALAPNFPVFLVGRSLVGVSIGGFWSLSTAILARLASDRDLPKAIALLQGGTAFALVLA
APLGSFLGGLIGWRGTFFITVPIGIAALVWQLVVLPRMPATSTASVARIFGLLRNRTFAIGMAATGLAFIGQNALSIYLR
PFLEGVTGLELNVLSMVLLGLGVGGLAGTSVIGFIPRRHLLLVLVGLPAALAVLALLLIALGPFAAVTASLLVMWGFFST
PLPVAWNTWMAAIVPGELEAAGGLQVALIQLAIAGGAFAGGMLFDTAGWWSTFLLAACLLAGSAVLAALASRLS

Specific function: Regulates the expression of oprD which encodes the imipenem-specific porin [H]

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ywfA [H]

Homologues:

Organism=Escherichia coli, GI145693198, Length=380, Percent_Identity=38.1578947368421, Blast_Score=242, Evalue=2e-65,
Organism=Escherichia coli, GI1787808, Length=247, Percent_Identity=27.5303643724696, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1786595, Length=275, Percent_Identity=24.3636363636364, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787947, Length=283, Percent_Identity=25.7950530035336, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 40659; Mature: 40528

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVELTLNETSLTDDTATSWSAVTCLSLLTFLLVGLEFLPVSLLTPIARDLSVSEGQAGL
CEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE
AITVSGVFAVITSLFGNAFLARIDRKSVVLLYTAVLVASSLAVALAPNFPVFLVGRSLVG
EEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEECCCCCEEEECCHHHH
VSIGGFWSLSTAILARLASDRDLPKAIALLQGGTAFALVLAAPLGSFLGGLIGWRGTFFI
EECCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEE
TVPIGIAALVWQLVVLPRMPATSTASVARIFGLLRNRTFAIGMAATGLAFIGQNALSIYL
EEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEHHHHHHHHHCCHHHHHHH
RPFLEGVTGLELNVLSMVLLGLGVGGLAGTSVIGFIPRRHLLLVLVGLPAALAVLALLLI
HHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
ALGPFAAVTASLLVMWGFFSTPLPVAWNTWMAAIVPGELEAAGGLQVALIQLAIAGGAFA
HHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHEECCCCCCCCCCHHHHHHHHHHHCCCHH
GGMLFDTAGWWSTFLLAACLLAGSAVLAALASRLS
CCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TVELTLNETSLTDDTATSWSAVTCLSLLTFLLVGLEFLPVSLLTPIARDLSVSEGQAGL
EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE
AITVSGVFAVITSLFGNAFLARIDRKSVVLLYTAVLVASSLAVALAPNFPVFLVGRSLVG
EEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEECCCCCEEEECCHHHH
VSIGGFWSLSTAILARLASDRDLPKAIALLQGGTAFALVLAAPLGSFLGGLIGWRGTFFI
EECCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEE
TVPIGIAALVWQLVVLPRMPATSTASVARIFGLLRNRTFAIGMAATGLAFIGQNALSIYL
EEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEHHHHHHHHHCCHHHHHHH
RPFLEGVTGLELNVLSMVLLGLGVGGLAGTSVIGFIPRRHLLLVLVGLPAALAVLALLLI
HHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
ALGPFAAVTASLLVMWGFFSTPLPVAWNTWMAAIVPGELEAAGGLQVALIQLAIAGGAFA
HHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHEECCCCCCCCCCHHHHHHHHHHHCCCHH
GGMLFDTAGWWSTFLLAACLLAGSAVLAALASRLS
CCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1427017; 10984043 [H]