| Definition | Rhizobium leguminosarum bv. viciae 3841 plasmid pRL12, complete sequence. |
|---|---|
| Accession | NC_008378 |
| Length | 870,021 |
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The map label for this gene is ordL [C]
Identifier: 116249194
GI number: 116249194
Start: 575265
End: 576611
Strand: Direct
Name: ordL [C]
Synonym: pRL120530
Alternate gene names: 116249194
Gene position: 575265-576611 (Clockwise)
Preceding gene: 116249193
Following gene: 116249195
Centisome position: 66.12
GC content: 62.81
Gene sequence:
>1347_bases ATGACCCGCCATGTGATCAAGCGCTTGCCGATCGACACCGGCGTTTCGGGATGGGAGGCGATCAGCGAACGCGCCTTTCC CGCAACAGCGCTTGAGCACGACATTACCGCGGACTGGCTAATCGTCGGCGGGGGGTTTGCCGGCCTGTCGGCGGCGCGCC GCCTTTCGCAATTGCGCCCTGAGGACAAGATCGTCGTCCTCGAGGCTCGCGAAGTCGCCAAGGGACCGGCCGGGAGGAAT TCCGGCTTCATGATCGACGTGCCGCACAATCTGTCGTCAGGCGAATATTCGGTGGCCGACGAAGAGGCGACCAAGGACGA GATCAGGCAGAACCGTCTGGCGATTTCCTTCGCAGCCGATGTCGCGGCGGAATACGGCCTGTCCAGGGAAACCTTCGACC CGTCTGGCAAGGTGAATGCGGCAGCCTCCGAGCGGGGGCTCGGGCTTAACGACAACTACAGGAAGTCGCTCGAAAAGATC GGCGAGGAGCATCGCGTTCTCGATGCCGATCAGATGCGGGAGATGACCGGCTCGCGCTATTATCGCGGAGGGCTCTATAC GCCAGGCGCCGTGATGATCCAGCCCGCCGACTATATTCGCGCCCTGGCGCGGGGACTTAGCTCAAAGGTCGCCATCCACG AGCATTCGCCGGTGCTGGAGCTTTCGCGCGAGGGCAGGTCCTGGAAGGCGAAATCCGGCCGAGGATCTGTTTCCGCGCCG AAGGTCATTCTAGGCGTGAACGGCCATATTCAAAGCTTCGGCCATTTTCGCGGACGGCTGATGCACATCTTCACCTACGC GTCGATGACATCAGCCTTTTCCCAGAACGAGTTCGGCGGCGATGTGACGGGCGCAGATCGTTGGGCGCTGCTGCCGGCCG ACCCGATGGGAGCGACGGTTCGAAAGATCACCACCGATGGTCGTTCGAGAATCGTCATCAGGACGAGGTTCACCTACGAC CCGAGCCTCCAGGTGTCCGAGAAGCGGGTCGCCGGCGTGGCGGCCGAGCAGCGCCGGTCGTTCGACGCGCGCTTTCCCGG ACTGGAAAGCCTGCCGATGGAATATAGCTGGGCGGGTGCTCTGTGCCTCAGCCGAAACCATGTGCCGGCATTCGGCGAGG TCGAAGAGGGGCTTTTTTCCGCCTGCTGCGAGAATGGCCTCGGCACTGTCAAGAGCACGCTCGCAGGGATGATGGCGGCC GATCTGGCTGCCGGCGCGGGTAGCCCCGAACTCGACCGATACAGGAACCAGCCGGAACCGAGCAAATTACCTCCCGAGCC CTTTGCGTGGCTGGGGGTCAATTCGGTTATCCGCTTTCAGGAATTGCGTGCAGGCCGCGAGGGATGA
Upstream 100 bases:
>100_bases TCGGCGGCCGCGACAAGTCGGTCTTCGCCCATGACAACTACTGCGAACTCAAGACCATCTGGATCGATGTCTCGGAACGC TCGGTCGATGAGACCATCCG
Downstream 100 bases:
>100_bases TCTCTCGCCGCGCAATATGAAGACTGCCCGCTCGCAGACTTCAATGACAATGGGAACGAAAAACAGGAGTAAGAACAATG AAGACTTTGTGGAAGGCGCT
Product: putative dehydrogenase/oxidoreductase
Products: NA
Alternate protein names: Oxidoreductase; Glycine/D-Amino Acid Oxidase; Oxidoreductase Protein; Gamma-Glutamylputrescine Oxidoreductase; FAD-Dependent Oxidoreductase; Glycine/D-Amino Acid Oxidase Deaminating; Oxidoreductase-Related Protein; Oxidoreductase OrdL; Dehydrogenase/Oxidoreductase; Sarcosine Oxidase Beta Subunit; D-Amino-Acid Dehydrogenase; Fad Dependent Oxidoreductase; L-Pipecolate Dehydrogenase; Twin-Arginine Translocation Pathway Signal; Aminophosphonate Oxidoreductase; FAD-Dependent Oxidoreductase Protein; FAD Dependent Oxidoreductase Family Protein; FAD Dependent D-Amino Acid Oxidase; FAD Dependent Oxidoreductase Family; Pyridine Nucleotide-Disulfide Oxidoreductase Family; D-Amino Acid Oxidase Family Protein
Number of amino acids: Translated: 448; Mature: 447
Protein sequence:
>448_residues MTRHVIKRLPIDTGVSGWEAISERAFPATALEHDITADWLIVGGGFAGLSAARRLSQLRPEDKIVVLEAREVAKGPAGRN SGFMIDVPHNLSSGEYSVADEEATKDEIRQNRLAISFAADVAAEYGLSRETFDPSGKVNAAASERGLGLNDNYRKSLEKI GEEHRVLDADQMREMTGSRYYRGGLYTPGAVMIQPADYIRALARGLSSKVAIHEHSPVLELSREGRSWKAKSGRGSVSAP KVILGVNGHIQSFGHFRGRLMHIFTYASMTSAFSQNEFGGDVTGADRWALLPADPMGATVRKITTDGRSRIVIRTRFTYD PSLQVSEKRVAGVAAEQRRSFDARFPGLESLPMEYSWAGALCLSRNHVPAFGEVEEGLFSACCENGLGTVKSTLAGMMAA DLAAGAGSPELDRYRNQPEPSKLPPEPFAWLGVNSVIRFQELRAGREG
Sequences:
>Translated_448_residues MTRHVIKRLPIDTGVSGWEAISERAFPATALEHDITADWLIVGGGFAGLSAARRLSQLRPEDKIVVLEAREVAKGPAGRN SGFMIDVPHNLSSGEYSVADEEATKDEIRQNRLAISFAADVAAEYGLSRETFDPSGKVNAAASERGLGLNDNYRKSLEKI GEEHRVLDADQMREMTGSRYYRGGLYTPGAVMIQPADYIRALARGLSSKVAIHEHSPVLELSREGRSWKAKSGRGSVSAP KVILGVNGHIQSFGHFRGRLMHIFTYASMTSAFSQNEFGGDVTGADRWALLPADPMGATVRKITTDGRSRIVIRTRFTYD PSLQVSEKRVAGVAAEQRRSFDARFPGLESLPMEYSWAGALCLSRNHVPAFGEVEEGLFSACCENGLGTVKSTLAGMMAA DLAAGAGSPELDRYRNQPEPSKLPPEPFAWLGVNSVIRFQELRAGREG >Mature_447_residues TRHVIKRLPIDTGVSGWEAISERAFPATALEHDITADWLIVGGGFAGLSAARRLSQLRPEDKIVVLEAREVAKGPAGRNS GFMIDVPHNLSSGEYSVADEEATKDEIRQNRLAISFAADVAAEYGLSRETFDPSGKVNAAASERGLGLNDNYRKSLEKIG EEHRVLDADQMREMTGSRYYRGGLYTPGAVMIQPADYIRALARGLSSKVAIHEHSPVLELSREGRSWKAKSGRGSVSAPK VILGVNGHIQSFGHFRGRLMHIFTYASMTSAFSQNEFGGDVTGADRWALLPADPMGATVRKITTDGRSRIVIRTRFTYDP SLQVSEKRVAGVAAEQRRSFDARFPGLESLPMEYSWAGALCLSRNHVPAFGEVEEGLFSACCENGLGTVKSTLAGMMAAD LAAGAGSPELDRYRNQPEPSKLPPEPFAWLGVNSVIRFQELRAGREG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 1.-.-.- [C]
Molecular weight: Translated: 48755; Mature: 48623
Theoretical pI: Translated: 7.71; Mature: 7.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRHVIKRLPIDTGVSGWEAISERAFPATALEHDITADWLIVGGGFAGLSAARRLSQLRP CCCHHHHHCCCCCCCCHHHHHHHCCCCCHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCC EDKIVVLEAREVAKGPAGRNSGFMIDVPHNLSSGEYSVADEEATKDEIRQNRLAISFAAD CCCEEEEECHHHHCCCCCCCCCEEEECCCCCCCCCEECCCCHHHHHHHHHHHEEEEHHHH VAAEYGLSRETFDPSGKVNAAASERGLGLNDNYRKSLEKIGEEHRVLDADQMREMTGSRY HHHHHCCCCCCCCCCCCEECCHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCE YRGGLYTPGAVMIQPADYIRALARGLSSKVAIHEHSPVLELSREGRSWKAKSGRGSVSAP ECCCCCCCCEEEECCHHHHHHHHHCCCCCEEEECCCCHHHHHCCCCCEECCCCCCCCCCC KVILGVNGHIQSFGHFRGRLMHIFTYASMTSAFSQNEFGGDVTGADRWALLPADPMGATV EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHH RKITTDGRSRIVIRTRFTYDPSLQVSEKRVAGVAAEQRRSFDARFPGLESLPMEYSWAGA HEEECCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCE LCLSRNHVPAFGEVEEGLFSACCENGLGTVKSTLAGMMAADLAAGAGSPELDRYRNQPEP EEECCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCC SKLPPEPFAWLGVNSVIRFQELRAGREG CCCCCCCEECCCHHHHHHHHHHHCCCCC >Mature Secondary Structure TRHVIKRLPIDTGVSGWEAISERAFPATALEHDITADWLIVGGGFAGLSAARRLSQLRP CCHHHHHCCCCCCCCHHHHHHHCCCCCHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCC EDKIVVLEAREVAKGPAGRNSGFMIDVPHNLSSGEYSVADEEATKDEIRQNRLAISFAAD CCCEEEEECHHHHCCCCCCCCCEEEECCCCCCCCCEECCCCHHHHHHHHHHHEEEEHHHH VAAEYGLSRETFDPSGKVNAAASERGLGLNDNYRKSLEKIGEEHRVLDADQMREMTGSRY HHHHHCCCCCCCCCCCCEECCHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCE YRGGLYTPGAVMIQPADYIRALARGLSSKVAIHEHSPVLELSREGRSWKAKSGRGSVSAP ECCCCCCCCEEEECCHHHHHHHHHCCCCCEEEECCCCHHHHHCCCCCEECCCCCCCCCCC KVILGVNGHIQSFGHFRGRLMHIFTYASMTSAFSQNEFGGDVTGADRWALLPADPMGATV EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHH RKITTDGRSRIVIRTRFTYDPSLQVSEKRVAGVAAEQRRSFDARFPGLESLPMEYSWAGA HEEECCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCE LCLSRNHVPAFGEVEEGLFSACCENGLGTVKSTLAGMMAADLAAGAGSPELDRYRNQPEP EEECCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCC SKLPPEPFAWLGVNSVIRFQELRAGREG CCCCCCCEECCCHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA