| Definition | Rhizobium leguminosarum bv. viciae 3841 plasmid pRL12, complete sequence. |
|---|---|
| Accession | NC_008378 |
| Length | 870,021 |
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The map label for this gene is esd [H]
Identifier: 116249189
GI number: 116249189
Start: 570267
End: 571103
Strand: Direct
Name: esd [H]
Synonym: pRL120525
Alternate gene names: 116249189
Gene position: 570267-571103 (Clockwise)
Preceding gene: 116249188
Following gene: 116249190
Centisome position: 65.55
GC content: 61.17
Gene sequence:
>837_bases ATGAAGACGATCTCGACCGAAAATTCTCATGGCGGCACCCAGGGCGTTTACCTCGATCGCTCGGACGCCTGCGACTGCGA CATGACCTTTGCGGTCTTCCTGCCGCCGCAGGCCAAAGCACGGAAGCTGCCGGTTCTATGGTACCTTTCCGGTCTGACCT GCACCCATGCCAACGTCATGGAAAAGGGCGAGTATCGGCGTCTTGCCGCAGAACTTGGCATCATCGTCGTCTGCCCCGAC ACCAGTCCGCGGGGCGATGCCGTCCCGGACGAAGCTGATAATTGGCAGTTCGGCAAGGGTGCCGGCTTCTACGTCGACGC CACCGAGCCGCCGTTCGTACAGAACTATCGGATGTACAGCTACGTCGTCGATGAATTGCCGAAGCTTATCGCCGCCGAGT TTCCGGTCGACATGGACCGACAGGGCATCTTCGGACACTCGATGGGCGGACATGGCGCGATCACGATTGCGCTCAAGAAC CCCGGACGCTTCGGCAGCTGCTCGGCCTTCGCTCCGATCAGCCACCCCTCGGTCTCCGGTTGGTCAAAGCCGGCATTCCG GAAATACCTCGGATCGGATGAAACGGCCTGGCGGGCATATGATGCCTGCTCGCTGATCGAAGATGGGCACCGGTTCCCCG AATTCCTCGTCGACCAGGGGACGGCGGATAGCTTCCTGGAGGAGGGATTGCGCCCCGAAGAGCTCAGGCAAGCCTGCGAG ACGGCCGGCATCAGCCTGCGGCTTCGCATGCAGGAAGGCTACGGCCACTCCTACTTCTTCATTTCGACATTCATGGAAGA CCATCTGCGCTGGCACGCGCGGAGGTTGGGAGACTGA
Upstream 100 bases:
>100_bases TCCGATGATCACCCACACAATGCCGCTCGAAGACATCAACAAGGGCTTCGAGCTGATGCACAAGGGCGAAAGCATCCGCG GCGTGGTCGTGTACTGAGCC
Downstream 100 bases:
>100_bases TTGCAGAGCTTGGCCGGGCATATCGCAAACGGCCCAGAAGGGGAGGAGAAACCCATGACCAGCATAGCCATACATCCGGC AGTGGATTCAGGCTTTCGGG
Product: putative esterase
Products: NA
Alternate protein names: FGH [H]
Number of amino acids: Translated: 278; Mature: 278
Protein sequence:
>278_residues MKTISTENSHGGTQGVYLDRSDACDCDMTFAVFLPPQAKARKLPVLWYLSGLTCTHANVMEKGEYRRLAAELGIIVVCPD TSPRGDAVPDEADNWQFGKGAGFYVDATEPPFVQNYRMYSYVVDELPKLIAAEFPVDMDRQGIFGHSMGGHGAITIALKN PGRFGSCSAFAPISHPSVSGWSKPAFRKYLGSDETAWRAYDACSLIEDGHRFPEFLVDQGTADSFLEEGLRPEELRQACE TAGISLRLRMQEGYGHSYFFISTFMEDHLRWHARRLGD
Sequences:
>Translated_278_residues MKTISTENSHGGTQGVYLDRSDACDCDMTFAVFLPPQAKARKLPVLWYLSGLTCTHANVMEKGEYRRLAAELGIIVVCPD TSPRGDAVPDEADNWQFGKGAGFYVDATEPPFVQNYRMYSYVVDELPKLIAAEFPVDMDRQGIFGHSMGGHGAITIALKN PGRFGSCSAFAPISHPSVSGWSKPAFRKYLGSDETAWRAYDACSLIEDGHRFPEFLVDQGTADSFLEEGLRPEELRQACE TAGISLRLRMQEGYGHSYFFISTFMEDHLRWHARRLGD >Mature_278_residues MKTISTENSHGGTQGVYLDRSDACDCDMTFAVFLPPQAKARKLPVLWYLSGLTCTHANVMEKGEYRRLAAELGIIVVCPD TSPRGDAVPDEADNWQFGKGAGFYVDATEPPFVQNYRMYSYVVDELPKLIAAEFPVDMDRQGIFGHSMGGHGAITIALKN PGRFGSCSAFAPISHPSVSGWSKPAFRKYLGSDETAWRAYDACSLIEDGHRFPEFLVDQGTADSFLEEGLRPEELRQACE TAGISLRLRMQEGYGHSYFFISTFMEDHLRWHARRLGD
Specific function: Serine hydrolase involved in the detoxification of formaldehyde. Hydrolyzes S-formylglutathione to glutathione and formate (Probable) [H]
COG id: COG0627
COG function: function code R; Predicted esterase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the esterase D family [H]
Homologues:
Organism=Homo sapiens, GI33413400, Length=280, Percent_Identity=52.1428571428571, Blast_Score=300, Evalue=1e-81, Organism=Escherichia coli, GI1786551, Length=277, Percent_Identity=46.2093862815885, Blast_Score=265, Evalue=2e-72, Organism=Escherichia coli, GI1788477, Length=278, Percent_Identity=46.7625899280576, Blast_Score=253, Evalue=1e-68, Organism=Caenorhabditis elegans, GI17510185, Length=278, Percent_Identity=47.841726618705, Blast_Score=256, Evalue=1e-68, Organism=Saccharomyces cerevisiae, GI6322393, Length=297, Percent_Identity=39.0572390572391, Blast_Score=211, Evalue=1e-55, Organism=Drosophila melanogaster, GI45551932, Length=280, Percent_Identity=48.2142857142857, Blast_Score=261, Evalue=4e-70, Organism=Drosophila melanogaster, GI24648347, Length=280, Percent_Identity=48.2142857142857, Blast_Score=261, Evalue=4e-70,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000801 - InterPro: IPR014186 [H]
Pfam domain/function: PF00756 Esterase [H]
EC number: =3.1.2.12 [H]
Molecular weight: Translated: 30968; Mature: 30968
Theoretical pI: Translated: 5.36; Mature: 5.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTISTENSHGGTQGVYLDRSDACDCDMTFAVFLPPQAKARKLPVLWYLSGLTCTHANVM CCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCHHHCCCCEEEEECCCEECCHHHH EKGEYRRLAAELGIIVVCPDTSPRGDAVPDEADNWQFGKGAGFYVDATEPPFVQNYRMYS HCCHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHH YVVDELPKLIAAEFPVDMDRQGIFGHSMGGHGAITIALKNPGRFGSCSAFAPISHPSVSG HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCC WSKPAFRKYLGSDETAWRAYDACSLIEDGHRFPEFLVDQGTADSFLEEGLRPEELRQACE CCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHCCCHHHHHHHHH TAGISLRLRMQEGYGHSYFFISTFMEDHLRWHARRLGD HCCCEEEEEEECCCCCEEEHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKTISTENSHGGTQGVYLDRSDACDCDMTFAVFLPPQAKARKLPVLWYLSGLTCTHANVM CCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCHHHCCCCEEEEECCCEECCHHHH EKGEYRRLAAELGIIVVCPDTSPRGDAVPDEADNWQFGKGAGFYVDATEPPFVQNYRMYS HCCHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHH YVVDELPKLIAAEFPVDMDRQGIFGHSMGGHGAITIALKNPGRFGSCSAFAPISHPSVSG HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCC WSKPAFRKYLGSDETAWRAYDACSLIEDGHRFPEFLVDQGTADSFLEEGLRPEELRQACE CCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHCCCHHHHHHHHH TAGISLRLRMQEGYGHSYFFISTFMEDHLRWHARRLGD HCCCEEEEEEECCCCCEEEHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8892832 [H]