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The map label for this gene is ydeP [H]

Identifier: 116249173

GI number: 116249173

Start: 553351

End: 555645

Strand: Direct

Name: ydeP [H]

Synonym: pRL120509

Alternate gene names: 116249173

Gene position: 553351-555645 (Clockwise)

Preceding gene: 116249172

Following gene: 116249174

Centisome position: 63.6

GC content: 63.62

Gene sequence:

>2295_bases
ATGGACACAAAATTCATTGGTAAGAAATCGGCGGCAGCCGGCGGCTGGGGCGCTTTGAAGAGCTGCGGCAAGCGGTTGCT
GCAAAGCGGCATGCCGATTTCAGGGGCGCGGACGATGCTGAAGGCGAACCAGCCGGATGGTTTCGATTGCCCGGGCTGCG
CCTGGGGCGATCCGGAGCACGGATCGTCGTTCGAGTTCTGCGAGAACGGCGTGAAGGCCGTCGCCTGGGAGGCGACAGAG
AAGCGGGCCACGCCCGCCTTCTTCGCGGAAAAGACTGTATCGCAGCTTCGCCAGCTGACGGACTATGAACTGGAACTCAA
TGGCCGCCTCACGCATCCGATGCGCTACGATGCGGCGAGCGACCGCTACCTGCCGGTCGCATGGGAGGATGCCTTTGCCG
AGATCGGCAGCATTCTGACGGGCCTCGACAATCCCAACCGGGCGGAATTCTACACGTCGGGCCGGGCGAGCAACGAGGCC
GCCTTCCTGTACCAGCTGTTCGTACGCGTCTACGGCACCAACAATTTTCCCGACTGCTCCAACATGTGCCACGAGGCGAG
CGGCATCGCCATGCGTCAGGCGATCGGGGTCGGCAAGGGGACCGTGTTGCTGGAGGATTTCGAAGAGGCTGATGCGATCT
TCGTGATCGGGCAGAACCCGGGCACCAACCATCCGAGGATGCTCGGCGACCTGCGCCGGGCGGCCATCCGCGGCGCGCGC
GTCGTCGTCTTCAATCCCATCCGCGAACGCGGCCTCGAGCGCTTCTCCGACCCGCAGGACAAGGTCGAGATGCTGCGCGG
CGGTTCGACCGATATCGCCAGCCTTTATCTGCAACCGCAGCTCGGCGGCGACATGGCCGCGGTGCGCGGGATGGCAAAGG
CCGCGCTGGCCGCGGAAGACGCAGCCGTCGCTGCCGGTCTGCCCTCCGTTCTCGACCATGCATTTCTCGCCGAACATTGC
GCGGGTTTTGCGGAATACCGGGCAGCCGTCGAGGCGACGAGCTGGGCTGAGATCGAGGACCAGTCGGGACTGAGCCGGCA
GGAGATCGAGCGGGCGGCCGATGTCTATATCGGCGCCCAGCGGGTCATCTGCACCTGGGCGATGGGCGTGACCCAGCATC
TGCATTCCGTCTCGACGATCCGCGAGATCGCCAACTTCATGTTCCTGCGCGGCAATATCGGCCGGCCGGGTGCCGGCCTT
TGCCCGGTTCGCGGCCATTCCAACGTGCAGGGCGACCGCACCGTCGGCATCAACGAAAAGCCATCGGACAATTTCCTCGA
TGCGCTGGAGAAGCATTTCCGTTTCACCGTCCCCCGCGAACATGGCCACAATGTCCTTGCCGCGATCGGCGCGATGCTCG
ACGGCTCGGCCGAGGCCTTCATCGGGCTTGGCGGCAATTTCGCCCGCGCCACGCCCGACAGCGCACTCGTTGAAAAGGCG
CTTCGGCGGCTGAAGCTGACGGTGCACATCGCGACCAAACCCAATCATTCGCATCTCATGCCCGGCGAGACGGCCTTCAT
CCTGCCGTGCCTCGGGCGCACCGAGATGGATCTAAACGCGGCGGGCAACTCCCAGCTCGTGAGCGTCGAGGATTCGATGA
GCATGGTGCATGGTTCCGCCGGCATCAATCGTCCGGCCTCACCGCATCTCCTCTCGGAAGTCGCCATCATCGCCGGCATT
GCACAGGCGACGGTCGGCTCCGCCGTGGTCGACTGGGCAGAACTCGCCGACGACCACGACCGCATCCGCGATCATATCGA
GGCGACCATTCCAGGCTTCGAAAACTACAATGCGCGCCTGCGCAAGCCGCGCGGTTTCCACCTGCGCAATACGGCAGCCC
ATCGCGAGTGGGATACGCCGGCAGGCAAGGCATCATTCTCTTCGGAGGCGCTTCCCGACGAGACGGTGCATCAGCGGGCG
CGAAAGGGCGAAGGGCGTTTCGCCCTGCAGACGTTCCGGTCGCATGATCAATACAATACGACGGTCTACGGTCTCGATGA
CCGATATCGCGGCGTCTATGGGGAGCGGCAGGTCATCTTCATTCATCCAGCCGACCTGAAGGCGATGAATGCCGAGGCCG
GTGACCGGGTCGACGTGGTCGGCGAGCATGATGACGGTATCGAGCGCATCGCTGAGAATTTCCGCTTTGTGCCCTATGAC
ATTCCGCGAGGAAGCATCGCGGGTTATTATCCCGAACTGAACGTGCTCGTGCCGCTTAGCAGCGCGGGTACGGAAAGCGA
TACGCCCACCTCGAAATCCATCATGGTTTCCTTCCGCCTGCGAAAAGCCGCGTGA

Upstream 100 bases:

>100_bases
ATGAAGGACGTCGGTTAGATCGAATCCTTGATAGGTTTTTCCTATCGAGCCATCGCGCGTGCGCCCTTGATGTTTTCCCC
GCTTCGACAATACAGGGCGC

Downstream 100 bases:

>100_bases
GCGAAGAGGCGTCCGACGTCGATCGTTTTCTTGCCCTCGTCGCTGCGGCGCAAGGCAGGGATACCAGGCTGACATCCATC
CAGGCCGGTCTCCTTGTCGC

Product: putative molybdopterin-binding oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 764; Mature: 764

Protein sequence:

>764_residues
MDTKFIGKKSAAAGGWGALKSCGKRLLQSGMPISGARTMLKANQPDGFDCPGCAWGDPEHGSSFEFCENGVKAVAWEATE
KRATPAFFAEKTVSQLRQLTDYELELNGRLTHPMRYDAASDRYLPVAWEDAFAEIGSILTGLDNPNRAEFYTSGRASNEA
AFLYQLFVRVYGTNNFPDCSNMCHEASGIAMRQAIGVGKGTVLLEDFEEADAIFVIGQNPGTNHPRMLGDLRRAAIRGAR
VVVFNPIRERGLERFSDPQDKVEMLRGGSTDIASLYLQPQLGGDMAAVRGMAKAALAAEDAAVAAGLPSVLDHAFLAEHC
AGFAEYRAAVEATSWAEIEDQSGLSRQEIERAADVYIGAQRVICTWAMGVTQHLHSVSTIREIANFMFLRGNIGRPGAGL
CPVRGHSNVQGDRTVGINEKPSDNFLDALEKHFRFTVPREHGHNVLAAIGAMLDGSAEAFIGLGGNFARATPDSALVEKA
LRRLKLTVHIATKPNHSHLMPGETAFILPCLGRTEMDLNAAGNSQLVSVEDSMSMVHGSAGINRPASPHLLSEVAIIAGI
AQATVGSAVVDWAELADDHDRIRDHIEATIPGFENYNARLRKPRGFHLRNTAAHREWDTPAGKASFSSEALPDETVHQRA
RKGEGRFALQTFRSHDQYNTTVYGLDDRYRGVYGERQVIFIHPADLKAMNAEAGDRVDVVGEHDDGIERIAENFRFVPYD
IPRGSIAGYYPELNVLVPLSSAGTESDTPTSKSIMVSFRLRKAA

Sequences:

>Translated_764_residues
MDTKFIGKKSAAAGGWGALKSCGKRLLQSGMPISGARTMLKANQPDGFDCPGCAWGDPEHGSSFEFCENGVKAVAWEATE
KRATPAFFAEKTVSQLRQLTDYELELNGRLTHPMRYDAASDRYLPVAWEDAFAEIGSILTGLDNPNRAEFYTSGRASNEA
AFLYQLFVRVYGTNNFPDCSNMCHEASGIAMRQAIGVGKGTVLLEDFEEADAIFVIGQNPGTNHPRMLGDLRRAAIRGAR
VVVFNPIRERGLERFSDPQDKVEMLRGGSTDIASLYLQPQLGGDMAAVRGMAKAALAAEDAAVAAGLPSVLDHAFLAEHC
AGFAEYRAAVEATSWAEIEDQSGLSRQEIERAADVYIGAQRVICTWAMGVTQHLHSVSTIREIANFMFLRGNIGRPGAGL
CPVRGHSNVQGDRTVGINEKPSDNFLDALEKHFRFTVPREHGHNVLAAIGAMLDGSAEAFIGLGGNFARATPDSALVEKA
LRRLKLTVHIATKPNHSHLMPGETAFILPCLGRTEMDLNAAGNSQLVSVEDSMSMVHGSAGINRPASPHLLSEVAIIAGI
AQATVGSAVVDWAELADDHDRIRDHIEATIPGFENYNARLRKPRGFHLRNTAAHREWDTPAGKASFSSEALPDETVHQRA
RKGEGRFALQTFRSHDQYNTTVYGLDDRYRGVYGERQVIFIHPADLKAMNAEAGDRVDVVGEHDDGIERIAENFRFVPYD
IPRGSIAGYYPELNVLVPLSSAGTESDTPTSKSIMVSFRLRKAA
>Mature_764_residues
MDTKFIGKKSAAAGGWGALKSCGKRLLQSGMPISGARTMLKANQPDGFDCPGCAWGDPEHGSSFEFCENGVKAVAWEATE
KRATPAFFAEKTVSQLRQLTDYELELNGRLTHPMRYDAASDRYLPVAWEDAFAEIGSILTGLDNPNRAEFYTSGRASNEA
AFLYQLFVRVYGTNNFPDCSNMCHEASGIAMRQAIGVGKGTVLLEDFEEADAIFVIGQNPGTNHPRMLGDLRRAAIRGAR
VVVFNPIRERGLERFSDPQDKVEMLRGGSTDIASLYLQPQLGGDMAAVRGMAKAALAAEDAAVAAGLPSVLDHAFLAEHC
AGFAEYRAAVEATSWAEIEDQSGLSRQEIERAADVYIGAQRVICTWAMGVTQHLHSVSTIREIANFMFLRGNIGRPGAGL
CPVRGHSNVQGDRTVGINEKPSDNFLDALEKHFRFTVPREHGHNVLAAIGAMLDGSAEAFIGLGGNFARATPDSALVEKA
LRRLKLTVHIATKPNHSHLMPGETAFILPCLGRTEMDLNAAGNSQLVSVEDSMSMVHGSAGINRPASPHLLSEVAIIAGI
AQATVGSAVVDWAELADDHDRIRDHIEATIPGFENYNARLRKPRGFHLRNTAAHREWDTPAGKASFSSEALPDETVHQRA
RKGEGRFALQTFRSHDQYNTTVYGLDDRYRGVYGERQVIFIHPADLKAMNAEAGDRVDVVGEHDDGIERIAENFRFVPYD
IPRGSIAGYYPELNVLVPLSSAGTESDTPTSKSIMVSFRLRKAA

Specific function: Probably involved in acid resistance [H]

COG id: COG0243

COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]

Homologues:

Organism=Escherichia coli, GI1787778, Length=758, Percent_Identity=49.3403693931398, Blast_Score=758, Evalue=0.0,
Organism=Escherichia coli, GI3868721, Length=372, Percent_Identity=28.7634408602151, Blast_Score=153, Evalue=4e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009010
- InterPro:   IPR006657
- InterPro:   IPR006656
- InterPro:   IPR010046 [H]

Pfam domain/function: PF00384 Molybdopterin; PF01568 Molydop_binding [H]

EC number: NA

Molecular weight: Translated: 83109; Mature: 83109

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTKFIGKKSAAAGGWGALKSCGKRLLQSGMPISGARTMLKANQPDGFDCPGCAWGDPEH
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC
GSSFEFCENGVKAVAWEATEKRATPAFFAEKTVSQLRQLTDYELELNGRLTHPMRYDAAS
CCCHHHHHCCCEEEEEECHHHCCCHHHHHHHHHHHHHHHCCCEEEECCEECCCEECCCCC
DRYLPVAWEDAFAEIGSILTGLDNPNRAEFYTSGRASNEAAFLYQLFVRVYGTNNFPDCS
CCEEEEEHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCHH
NMCHEASGIAMRQAIGVGKGTVLLEDFEEADAIFVIGQNPGTNHPRMLGDLRRAAIRGAR
HHHHHHCCHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCE
VVVFNPIRERGLERFSDPQDKVEMLRGGSTDIASLYLQPQLGGDMAAVRGMAKAALAAED
EEEECCHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHH
AAVAAGLPSVLDHAFLAEHCAGFAEYRAAVEATSWAEIEDQSGLSRQEIERAADVYIGAQ
HHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCH
RVICTWAMGVTQHLHSVSTIREIANFMFLRGNIGRPGAGLCPVRGHSNVQGDRTVGINEK
HHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCC
PSDNFLDALEKHFRFTVPREHGHNVLAAIGAMLDGSAEAFIGLGGNFARATPDSALVEKA
CCHHHHHHHHHHHEECCCHHHCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHH
LRRLKLTVHIATKPNHSHLMPGETAFILPCLGRTEMDLNAAGNSQLVSVEDSMSMVHGSA
HHHEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCEECCCCCCEEEEEHHHHHHHHCCC
GINRPASPHLLSEVAIIAGIAQATVGSAVVDWAELADDHDRIRDHIEATIPGFENYNARL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCEE
RKPRGFHLRNTAAHREWDTPAGKASFSSEALPDETVHQRARKGEGRFALQTFRSHDQYNT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHCCCCCCC
TVYGLDDRYRGVYGERQVIFIHPADLKAMNAEAGDRVDVVGEHDDGIERIAENFRFVPYD
EEEECCHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCHHHHHHHHCCCCCEEE
IPRGSIAGYYPELNVLVPLSSAGTESDTPTSKSIMVSFRLRKAA
CCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEEECCC
>Mature Secondary Structure
MDTKFIGKKSAAAGGWGALKSCGKRLLQSGMPISGARTMLKANQPDGFDCPGCAWGDPEH
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC
GSSFEFCENGVKAVAWEATEKRATPAFFAEKTVSQLRQLTDYELELNGRLTHPMRYDAAS
CCCHHHHHCCCEEEEEECHHHCCCHHHHHHHHHHHHHHHCCCEEEECCEECCCEECCCCC
DRYLPVAWEDAFAEIGSILTGLDNPNRAEFYTSGRASNEAAFLYQLFVRVYGTNNFPDCS
CCEEEEEHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCHH
NMCHEASGIAMRQAIGVGKGTVLLEDFEEADAIFVIGQNPGTNHPRMLGDLRRAAIRGAR
HHHHHHCCHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCE
VVVFNPIRERGLERFSDPQDKVEMLRGGSTDIASLYLQPQLGGDMAAVRGMAKAALAAED
EEEECCHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHH
AAVAAGLPSVLDHAFLAEHCAGFAEYRAAVEATSWAEIEDQSGLSRQEIERAADVYIGAQ
HHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCH
RVICTWAMGVTQHLHSVSTIREIANFMFLRGNIGRPGAGLCPVRGHSNVQGDRTVGINEK
HHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCC
PSDNFLDALEKHFRFTVPREHGHNVLAAIGAMLDGSAEAFIGLGGNFARATPDSALVEKA
CCHHHHHHHHHHHEECCCHHHCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHH
LRRLKLTVHIATKPNHSHLMPGETAFILPCLGRTEMDLNAAGNSQLVSVEDSMSMVHGSA
HHHEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCEECCCCCCEEEEEHHHHHHHHCCC
GINRPASPHLLSEVAIIAGIAQATVGSAVVDWAELADDHDRIRDHIEATIPGFENYNARL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCEE
RKPRGFHLRNTAAHREWDTPAGKASFSSEALPDETVHQRARKGEGRFALQTFRSHDQYNT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHCCCCCCC
TVYGLDDRYRGVYGERQVIFIHPADLKAMNAEAGDRVDVVGEHDDGIERIAENFRFVPYD
EEEECCHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCHHHHHHHHCCCCCEEE
IPRGSIAGYYPELNVLVPLSSAGTESDTPTSKSIMVSFRLRKAA
CCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]