| Definition | Rhizobium leguminosarum bv. viciae 3841 plasmid pRL12, complete sequence. |
|---|---|
| Accession | NC_008378 |
| Length | 870,021 |
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The map label for this gene is 116249150
Identifier: 116249150
GI number: 116249150
Start: 528409
End: 529587
Strand: Direct
Name: 116249150
Synonym: pRL120486
Alternate gene names: NA
Gene position: 528409-529587 (Clockwise)
Preceding gene: 116249149
Following gene: 116249159
Centisome position: 60.74
GC content: 59.71
Gene sequence:
>1179_bases ATGACCGACACCGACACAAAGCTGTTGCGGACATTCATCGCCGACGAGAACGAAGCCTTTGCCGATCGGCGCCAGGGAAA ATTCTGGCCTGCCAATCATTATCGCATCGGGCCCCTGGCGACCAAAGCTTCCGGGCTGCTCGATCCGAACGAGCAAATCG ATTTCTATTTCCATTTCATGCGCATAGCCGGCGGCGCACCCTCCGTCGGAGACAGGGAAATGCCGCTGCTGCTCGAGGCC TACCGGCGCATGCTGCCGTTTCTCGATCTTGGCGGTGTCATCCCGATGTCGCGGCGGCACAAATTGCTGTTCGTGTTCGG TTTTGACGATACCGGCGCCCTGCCGAGCGGCGAGACGATTTCGGCCAAGGCGCTGAAGGCGCGGCTCAAGCTCATCGCGC AGGTCGGCAATTATACGACGATGCCTGCCCAGCGCGACAAGAAGGCAAAGTTTGTTCCTTTCGCCTACGAGGCGGTGCGC ATTCTCGAGGTTTTCCAGCATCTCGGCTATCGCCACGACCGACGTTATGGCGAAGACCTCTACGATGTCACCAATCTCAG CTTCTGGGGTATGGTGTTTATCTGCCTGCTCAACAAGGCGACCCGTGCCGATCTTGTTGCCGATATGATCGAGGGCAAAT ATGATCTTATGCGGCGCGTCGAGCAACTGGCGATGCTGCACCGCTATATCGAGACAGTCCTGCCGGATATCGAGCCTGAC GAAGAGCGTTTCCGCTCGCTGGCGCGGCAGCTCAAGGGCATCGAGCTGGCGCGCCGCAATGCCACCGAATCCGTCGCCCT GGCGCAAAGGCTGGGCCTGCCATTTGGCGATGACGAGGAGTGGGAAATCCATATTGCGGTCCCGCTGCGCGGCACCGAAG GTCATCCGTTGATCGCCAAGAACGTCGTGCGATTGCAGATCCGGCCGAACCCGGACTGGCAGTGGGAGCTGAGCGCGCGC ATGGCCGAGCGTGGAGAGTACTCGGAAAGCGAAACAAAGAACTACCGGAACGATCTCGGTTTCCCAGTTCTCGGGCGCGG AAATCTTCATGCCTTTCCGACATGGCTGAGACAGGTGCGTGAGAAAAACGGGCTGGATTTCGACACCGGCGCCGCCGACA TTCGTGTGGGCCGCAAGCGGGCGGCAGCCAAACTGCTCGTTCAATGGCTGGAGAGCTGA
Upstream 100 bases:
>100_bases AACGCTATATCGATCCGAAGCAGGGTGGCCGAGGACCCTTTGGACATCTCGAGGCTGTCCGTACGATCGGACACGACCGT CTGATCGATAGGGACACACT
Downstream 100 bases:
>100_bases AAGCCGTGCCACGACCGCAGTGGCGTCGTGGCACGGTGACGGCTGTAAAACCGGCTCAGAAGGGATAGTGCTGGGCGGAA TCCTCGACCGTGATCCAGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 392; Mature: 391
Protein sequence:
>392_residues MTDTDTKLLRTFIADENEAFADRRQGKFWPANHYRIGPLATKASGLLDPNEQIDFYFHFMRIAGGAPSVGDREMPLLLEA YRRMLPFLDLGGVIPMSRRHKLLFVFGFDDTGALPSGETISAKALKARLKLIAQVGNYTTMPAQRDKKAKFVPFAYEAVR ILEVFQHLGYRHDRRYGEDLYDVTNLSFWGMVFICLLNKATRADLVADMIEGKYDLMRRVEQLAMLHRYIETVLPDIEPD EERFRSLARQLKGIELARRNATESVALAQRLGLPFGDDEEWEIHIAVPLRGTEGHPLIAKNVVRLQIRPNPDWQWELSAR MAERGEYSESETKNYRNDLGFPVLGRGNLHAFPTWLRQVREKNGLDFDTGAADIRVGRKRAAAKLLVQWLES
Sequences:
>Translated_392_residues MTDTDTKLLRTFIADENEAFADRRQGKFWPANHYRIGPLATKASGLLDPNEQIDFYFHFMRIAGGAPSVGDREMPLLLEA YRRMLPFLDLGGVIPMSRRHKLLFVFGFDDTGALPSGETISAKALKARLKLIAQVGNYTTMPAQRDKKAKFVPFAYEAVR ILEVFQHLGYRHDRRYGEDLYDVTNLSFWGMVFICLLNKATRADLVADMIEGKYDLMRRVEQLAMLHRYIETVLPDIEPD EERFRSLARQLKGIELARRNATESVALAQRLGLPFGDDEEWEIHIAVPLRGTEGHPLIAKNVVRLQIRPNPDWQWELSAR MAERGEYSESETKNYRNDLGFPVLGRGNLHAFPTWLRQVREKNGLDFDTGAADIRVGRKRAAAKLLVQWLES >Mature_391_residues TDTDTKLLRTFIADENEAFADRRQGKFWPANHYRIGPLATKASGLLDPNEQIDFYFHFMRIAGGAPSVGDREMPLLLEAY RRMLPFLDLGGVIPMSRRHKLLFVFGFDDTGALPSGETISAKALKARLKLIAQVGNYTTMPAQRDKKAKFVPFAYEAVRI LEVFQHLGYRHDRRYGEDLYDVTNLSFWGMVFICLLNKATRADLVADMIEGKYDLMRRVEQLAMLHRYIETVLPDIEPDE ERFRSLARQLKGIELARRNATESVALAQRLGLPFGDDEEWEIHIAVPLRGTEGHPLIAKNVVRLQIRPNPDWQWELSARM AERGEYSESETKNYRNDLGFPVLGRGNLHAFPTWLRQVREKNGLDFDTGAADIRVGRKRAAAKLLVQWLES
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44936; Mature: 44805
Theoretical pI: Translated: 8.80; Mature: 8.80
Prosite motif: PS00141 ASP_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDTDTKLLRTFIADENEAFADRRQGKFWPANHYRIGPLATKASGLLDPNEQIDFYFHFM CCCHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCEECCCHHHHHCCCCCCCCHHHHHHHHH RIAGGAPSVGDREMPLLLEAYRRMLPFLDLGGVIPMSRRHKLLFVFGFDDTGALPSGETI HHCCCCCCCCCCCCHHHHHHHHHHCCHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCH SAKALKARLKLIAQVGNYTTMPAQRDKKAKFVPFAYEAVRILEVFQHLGYRHDRRYGEDL HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCHHH YDVTNLSFWGMVFICLLNKATRADLVADMIEGKYDLMRRVEQLAMLHRYIETVLPDIEPD HHHHCHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC EERFRSLARQLKGIELARRNATESVALAQRLGLPFGDDEEWEIHIAVPLRGTEGHPLIAK HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCC NVVRLQIRPNPDWQWELSARMAERGEYSESETKNYRNDLGFPVLGRGNLHAFPTWLRQVR CEEEEEEECCCCCCEEHHHHHHHCCCCCHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHH EKNGLDFDTGAADIRVGRKRAAAKLLVQWLES HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure TDTDTKLLRTFIADENEAFADRRQGKFWPANHYRIGPLATKASGLLDPNEQIDFYFHFM CCHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCEECCCHHHHHCCCCCCCCHHHHHHHHH RIAGGAPSVGDREMPLLLEAYRRMLPFLDLGGVIPMSRRHKLLFVFGFDDTGALPSGETI HHCCCCCCCCCCCCHHHHHHHHHHCCHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCH SAKALKARLKLIAQVGNYTTMPAQRDKKAKFVPFAYEAVRILEVFQHLGYRHDRRYGEDL HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCHHH YDVTNLSFWGMVFICLLNKATRADLVADMIEGKYDLMRRVEQLAMLHRYIETVLPDIEPD HHHHCHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC EERFRSLARQLKGIELARRNATESVALAQRLGLPFGDDEEWEIHIAVPLRGTEGHPLIAK HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCC NVVRLQIRPNPDWQWELSARMAERGEYSESETKNYRNDLGFPVLGRGNLHAFPTWLRQVR CEEEEEEECCCCCCEEHHHHHHHCCCCCHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHH EKNGLDFDTGAADIRVGRKRAAAKLLVQWLES HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA