| Definition | Rhizobium leguminosarum bv. viciae 3841 plasmid pRL12, complete sequence. |
|---|---|
| Accession | NC_008378 |
| Length | 870,021 |
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The map label for this gene is 116249147
Identifier: 116249147
GI number: 116249147
Start: 525159
End: 526274
Strand: Direct
Name: 116249147
Synonym: pRL120483
Alternate gene names: NA
Gene position: 525159-526274 (Clockwise)
Preceding gene: 116249146
Following gene: 116249148
Centisome position: 60.36
GC content: 52.96
Gene sequence:
>1116_bases TTGATGAACGGCAGTGACTGGAAGGCAACAATTCAAGCCGCTGTGGCGTTTGATGTCGACCGCTTTGCGATATGTGTTGG CGAGCTTGAATACGATGATCCATTTACTGCGATCATTTCTTATGATGGGCGATTTTCTCAGCCGTGGAGCAGAACGGATG TTCAGCGCGAGATCGTCGATATCAGCTATATGGGAGCCGATCCTACGGAAGACCATGTCCCGGTAGCGCTCAGCAACGAG GGCGACGTCTATGTGTTGAAGGACGAGCATGCGGAGCGATCGAAGATCCCCGGAGCTGGGATTCTCAGCGAAGATGCTGA GGGTTTTGGGGCAGTCCATACGCTGGTCGTAGATGGACATAGCCAATATGTTGTCGGGGATAGCCGTCAACTCTATCGCA GAGAGGGCTTTGGAACATGGCAACGGCTTTCTGCGAACAAATCCCGCGAGGACGGTTATGAGGCCGAACATTTTGGAAAG GCGATTTCCTTGGACGGTTCGCTCATCGTCGAAAGTGTTCAAAGACCTTATTCTGCACCAAGCGCTGCGCAGCTCGATCC CAAAAGCTGGGAAAATGTCAGCCCGGAGCAGTTCCTGAAGATGATGAAGGAACAACGGTCCGAGCGCGTTACAAGGCCAC GCATCCAACGCGTGTATCATTATCTCGACGGCGGTTTCTCACGATTATCCCTCCCCGAAGATTGCGTGATTAGAGGGCTA TACCGCGACCCGGAGCAGCGTATTTGGTTTTTGGGCGGGGGAGGTCTGATCCTGCAGGGAACCATCGAAGGAGGATTTGA GAAGGTCGGCTTCCTCGGGGATACGGAAACGTTGTTCAGTGCCGCGTGGTGTCGTTCGGAGCTTTTTGCGGCCACAGACG ACGGTCTTCGCCGATTTGACGGCCATAAGCTTGGCATCGTGAAACCCAAACTAAATTCCGCAGCTATAAACCGAAATATT CCTGCACCTCTGAAAATTCAATCTTTCGATAACACGCTGATATATTTCGACAGGAAGCATGGCGTGTGCAGGTGGGACGG GCAATCCTGGGATTGGTACGAGATCCCGCCGTCACTTCTGCAACGCGAGTTCAAAGGCTTGCCTGCCAGACAATAG
Upstream 100 bases:
>100_bases GCCAGGTCGCGTCAAAAACCGGATTTGCCGCTCCTGGGCGAACGAGGGAACGGCCACTTCCGTCCGGCGAAGCCGAAACA GTACTGAGAAGGGGACATTA
Downstream 100 bases:
>100_bases GGCTCGTCTATCGTATCCTTGCAGCCATACCTGTTCATGGGCGGACATCGTCAGTACAGCCACCGGGATGCGGAGAAAGT CCCTGATCGCGATTTGAAGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 371; Mature: 371
Protein sequence:
>371_residues MMNGSDWKATIQAAVAFDVDRFAICVGELEYDDPFTAIISYDGRFSQPWSRTDVQREIVDISYMGADPTEDHVPVALSNE GDVYVLKDEHAERSKIPGAGILSEDAEGFGAVHTLVVDGHSQYVVGDSRQLYRREGFGTWQRLSANKSREDGYEAEHFGK AISLDGSLIVESVQRPYSAPSAAQLDPKSWENVSPEQFLKMMKEQRSERVTRPRIQRVYHYLDGGFSRLSLPEDCVIRGL YRDPEQRIWFLGGGGLILQGTIEGGFEKVGFLGDTETLFSAAWCRSELFAATDDGLRRFDGHKLGIVKPKLNSAAINRNI PAPLKIQSFDNTLIYFDRKHGVCRWDGQSWDWYEIPPSLLQREFKGLPARQ
Sequences:
>Translated_371_residues MMNGSDWKATIQAAVAFDVDRFAICVGELEYDDPFTAIISYDGRFSQPWSRTDVQREIVDISYMGADPTEDHVPVALSNE GDVYVLKDEHAERSKIPGAGILSEDAEGFGAVHTLVVDGHSQYVVGDSRQLYRREGFGTWQRLSANKSREDGYEAEHFGK AISLDGSLIVESVQRPYSAPSAAQLDPKSWENVSPEQFLKMMKEQRSERVTRPRIQRVYHYLDGGFSRLSLPEDCVIRGL YRDPEQRIWFLGGGGLILQGTIEGGFEKVGFLGDTETLFSAAWCRSELFAATDDGLRRFDGHKLGIVKPKLNSAAINRNI PAPLKIQSFDNTLIYFDRKHGVCRWDGQSWDWYEIPPSLLQREFKGLPARQ >Mature_371_residues MMNGSDWKATIQAAVAFDVDRFAICVGELEYDDPFTAIISYDGRFSQPWSRTDVQREIVDISYMGADPTEDHVPVALSNE GDVYVLKDEHAERSKIPGAGILSEDAEGFGAVHTLVVDGHSQYVVGDSRQLYRREGFGTWQRLSANKSREDGYEAEHFGK AISLDGSLIVESVQRPYSAPSAAQLDPKSWENVSPEQFLKMMKEQRSERVTRPRIQRVYHYLDGGFSRLSLPEDCVIRGL YRDPEQRIWFLGGGGLILQGTIEGGFEKVGFLGDTETLFSAAWCRSELFAATDDGLRRFDGHKLGIVKPKLNSAAINRNI PAPLKIQSFDNTLIYFDRKHGVCRWDGQSWDWYEIPPSLLQREFKGLPARQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41837; Mature: 41837
Theoretical pI: Translated: 5.08; Mature: 5.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMNGSDWKATIQAAVAFDVDRFAICVGELEYDDPFTAIISYDGRFSQPWSRTDVQREIVD CCCCCCHHHEEEEEEHCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCHHHHHHHHEE ISYMGADPTEDHVPVALSNEGDVYVLKDEHAERSKIPGAGILSEDAEGFGAVHTLVVDGH EEEECCCCCCCCCCEEECCCCCEEEECCCCCHHHCCCCCCCCCCCCCCCCEEEEEEEECC SQYVVGDSRQLYRREGFGTWQRLSANKSREDGYEAEHFGKAISLDGSLIVESVQRPYSAP CEEEECCCHHHHHHCCCCHHHHHCCCCCCCCCCCHHHCCCEEECCHHHHHHHHHCCCCCC SAAQLDPKSWENVSPEQFLKMMKEQRSERVTRPRIQRVYHYLDGGFSRLSLPEDCVIRGL CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHC YRDPEQRIWFLGGGGLILQGTIEGGFEKVGFLGDTETLFSAAWCRSELFAATDDGLRRFD CCCCCCEEEEEECCCEEEEEECCCCCHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHCC GHKLGIVKPKLNSAAINRNIPAPLKIQSFDNTLIYFDRKHGVCRWDGQSWDWYEIPPSLL CCEEEEECCCCCCHHHCCCCCCCEEEECCCCEEEEEECCCCEEEECCCCCCCEECCHHHH QREFKGLPARQ HHHHCCCCCCC >Mature Secondary Structure MMNGSDWKATIQAAVAFDVDRFAICVGELEYDDPFTAIISYDGRFSQPWSRTDVQREIVD CCCCCCHHHEEEEEEHCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCHHHHHHHHEE ISYMGADPTEDHVPVALSNEGDVYVLKDEHAERSKIPGAGILSEDAEGFGAVHTLVVDGH EEEECCCCCCCCCCEEECCCCCEEEECCCCCHHHCCCCCCCCCCCCCCCCEEEEEEEECC SQYVVGDSRQLYRREGFGTWQRLSANKSREDGYEAEHFGKAISLDGSLIVESVQRPYSAP CEEEECCCHHHHHHCCCCHHHHHCCCCCCCCCCCHHHCCCEEECCHHHHHHHHHCCCCCC SAAQLDPKSWENVSPEQFLKMMKEQRSERVTRPRIQRVYHYLDGGFSRLSLPEDCVIRGL CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHC YRDPEQRIWFLGGGGLILQGTIEGGFEKVGFLGDTETLFSAAWCRSELFAATDDGLRRFD CCCCCCEEEEEECCCEEEEEECCCCCHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHCC GHKLGIVKPKLNSAAINRNIPAPLKIQSFDNTLIYFDRKHGVCRWDGQSWDWYEIPPSLL CCEEEEECCCCCCHHHCCCCCCCEEEECCCCEEEEEECCCCEEEECCCCCCCEECCHHHH QREFKGLPARQ HHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA