| Definition | Rhizobium leguminosarum bv. viciae 3841 plasmid pRL12, complete sequence. |
|---|---|
| Accession | NC_008378 |
| Length | 870,021 |
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The map label for this gene is 116249145
Identifier: 116249145
GI number: 116249145
Start: 522554
End: 523663
Strand: Direct
Name: 116249145
Synonym: pRL120481
Alternate gene names: NA
Gene position: 522554-523663 (Clockwise)
Preceding gene: 116249144
Following gene: 116249146
Centisome position: 60.06
GC content: 61.71
Gene sequence:
>1110_bases TTGGACCTGATCAACCGGCTTCCCTTTCCGGCTATGGCCTTCCGGCAATTCGACGCGAATGGGGATTTGGATTGCGTCGT GTCGGTTCGCGGCACTTTCGTTCACCGCCAGGGCGATGCGCTCGCCATCGCCTCGAAACAGGAAGACTTCCAGTGGGAGG ATGCCTATGACGGCGATCCCCATGCCAGTCCTCTCCTGCGTCAGACCGATCTCACGCCAGAGAAGGTCGGAACCGACATC ACTTTCCTCGGCAATGCTTACGCCCCGGGCGGCGAGCCAGCACCTTCATGGCAGGTCGGCCTACGCGTCGGGCAGCTTTC CAAAAGGCTCGAAGTCCATGGCGCGCGCTTCTGGCGCCCCGTCGTCAAGGAGAAATGGGCAGGCTTTTCGGCAAAAGAAG CAAAGCGCGAGCTGACGGATTGGCAACTGACCGAAGCCGAGCCGGCATCTTCGGTGCCGATCTGCTGGAGCAAGGCATAT GGCGGTCAAATTCCCGGTACGGGCGACCCGGAAAACGAAACGCCAGCCGATGTCGAAGCGCGTAATCCGCTCGGTTGCGG CATCGTCAATCTCGACATGCCTTGGGATCAAGCGCCCGTCGCGGCGCCACAAATCACGTTGCCTGGCGAGAAGTTGAACT GGCGAGAGCCGGTCGAGCCGCAGGGACTGGGTCTCGTATCGCCCTGGTGGCGGTCCCGCCAGCAACATGCCGGCACCTAT GACGATACTTGGCTCAACGAGCGCCACCCGCTTCTGCCTAGGGATTTCGACGCACGCTTCTGGCAATGCGCTCATTCGGA TCTCGTTGTTATGCCGCATCTGATCGGGAACGAAGACTACCAGCTGGATCATCTGCACCCCAGCTTCGCCCTAGCCGCAG GGCGACTGCCGGGAATCACGCTGGGGGTCCGATGTGTCGGTCATGGGCGCGATGAGTGGTATCTGCTCTCGCTGGACGGC GTGCAACTCGACTGGCGGAACGATAGTCGCGTGATGCTGACCTGGCGGGCACGCTTTCCCCTTCAGGAGGCCGGCGAAAC ATCGCTGACGTTGACGCGGGTCCAAGTCAAAGCGACGGCCGATGCTGACGCCGATGAGGTTGCGGCATGA
Upstream 100 bases:
>100_bases GGCGAAGTGATCATCCTCGGCAAGACGTTCAACTTCGTCGCCACCGAACACTTCCAGATGCGCGGCAAGCCGATTGATCT GAACTGAGGAGGAAGTTCGC
Downstream 100 bases:
>100_bases GCATCCCGCGCGACAATTACGTCGGCGAACCCGACTATCCGGCGACCTGGACGACCAGGCAGCCGCGCGAAGGTTTGCGT GATCTTGACGAGGCAAAGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 369; Mature: 369
Protein sequence:
>369_residues MDLINRLPFPAMAFRQFDANGDLDCVVSVRGTFVHRQGDALAIASKQEDFQWEDAYDGDPHASPLLRQTDLTPEKVGTDI TFLGNAYAPGGEPAPSWQVGLRVGQLSKRLEVHGARFWRPVVKEKWAGFSAKEAKRELTDWQLTEAEPASSVPICWSKAY GGQIPGTGDPENETPADVEARNPLGCGIVNLDMPWDQAPVAAPQITLPGEKLNWREPVEPQGLGLVSPWWRSRQQHAGTY DDTWLNERHPLLPRDFDARFWQCAHSDLVVMPHLIGNEDYQLDHLHPSFALAAGRLPGITLGVRCVGHGRDEWYLLSLDG VQLDWRNDSRVMLTWRARFPLQEAGETSLTLTRVQVKATADADADEVAA
Sequences:
>Translated_369_residues MDLINRLPFPAMAFRQFDANGDLDCVVSVRGTFVHRQGDALAIASKQEDFQWEDAYDGDPHASPLLRQTDLTPEKVGTDI TFLGNAYAPGGEPAPSWQVGLRVGQLSKRLEVHGARFWRPVVKEKWAGFSAKEAKRELTDWQLTEAEPASSVPICWSKAY GGQIPGTGDPENETPADVEARNPLGCGIVNLDMPWDQAPVAAPQITLPGEKLNWREPVEPQGLGLVSPWWRSRQQHAGTY DDTWLNERHPLLPRDFDARFWQCAHSDLVVMPHLIGNEDYQLDHLHPSFALAAGRLPGITLGVRCVGHGRDEWYLLSLDG VQLDWRNDSRVMLTWRARFPLQEAGETSLTLTRVQVKATADADADEVAA >Mature_369_residues MDLINRLPFPAMAFRQFDANGDLDCVVSVRGTFVHRQGDALAIASKQEDFQWEDAYDGDPHASPLLRQTDLTPEKVGTDI TFLGNAYAPGGEPAPSWQVGLRVGQLSKRLEVHGARFWRPVVKEKWAGFSAKEAKRELTDWQLTEAEPASSVPICWSKAY GGQIPGTGDPENETPADVEARNPLGCGIVNLDMPWDQAPVAAPQITLPGEKLNWREPVEPQGLGLVSPWWRSRQQHAGTY DDTWLNERHPLLPRDFDARFWQCAHSDLVVMPHLIGNEDYQLDHLHPSFALAAGRLPGITLGVRCVGHGRDEWYLLSLDG VQLDWRNDSRVMLTWRARFPLQEAGETSLTLTRVQVKATADADADEVAA
Specific function: Unknown
COG id: COG5351
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41112; Mature: 41112
Theoretical pI: Translated: 4.79; Mature: 4.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLINRLPFPAMAFRQFDANGDLDCVVSVRGTFVHRQGDALAIASKQEDFQWEDAYDGDP CCHHHHCCCCHHHHHEECCCCCEEEEEEECEEEEEECCCEEEEECCCCCCCCCCCCCCCC HASPLLRQTDLTPEKVGTDITFLGNAYAPGGEPAPSWQVGLRVGQLSKRLEVHGARFWRP CCCCCHHHCCCCHHHHCCCEEEECCCCCCCCCCCCCHHHHEEHHHHHHHHHHCCHHHHHH VVKEKWAGFSAKEAKRELTDWQLTEAEPASSVPICWSKAYGGQIPGTGDPENETPADVEA HHHHHHCCCCHHHHHHHCCCCEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC RNPLGCGIVNLDMPWDQAPVAAPQITLPGEKLNWREPVEPQGLGLVSPWWRSRQQHAGTY CCCCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC DDTWLNERHPLLPRDFDARFWQCAHSDLVVMPHLIGNEDYQLDHLHPSFALAAGRLPGIT CCCCCCCCCCCCCCCCCCHHHHHCCCCEEEECHHHCCCCCEEECCCCHHHHHCCCCCCEE LGVRCVGHGRDEWYLLSLDGVQLDWRNDSRVMLTWRARFPLQEAGETSLTLTRVQVKATA EEEEEEECCCCCEEEEEECCEEEEECCCCEEEEEEEECCCHHHCCCCEEEEEEEEEEEEC DADADEVAA CCCHHHHCC >Mature Secondary Structure MDLINRLPFPAMAFRQFDANGDLDCVVSVRGTFVHRQGDALAIASKQEDFQWEDAYDGDP CCHHHHCCCCHHHHHEECCCCCEEEEEEECEEEEEECCCEEEEECCCCCCCCCCCCCCCC HASPLLRQTDLTPEKVGTDITFLGNAYAPGGEPAPSWQVGLRVGQLSKRLEVHGARFWRP CCCCCHHHCCCCHHHHCCCEEEECCCCCCCCCCCCCHHHHEEHHHHHHHHHHCCHHHHHH VVKEKWAGFSAKEAKRELTDWQLTEAEPASSVPICWSKAYGGQIPGTGDPENETPADVEA HHHHHHCCCCHHHHHHHCCCCEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC RNPLGCGIVNLDMPWDQAPVAAPQITLPGEKLNWREPVEPQGLGLVSPWWRSRQQHAGTY CCCCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC DDTWLNERHPLLPRDFDARFWQCAHSDLVVMPHLIGNEDYQLDHLHPSFALAAGRLPGIT CCCCCCCCCCCCCCCCCCHHHHHCCCCEEEECHHHCCCCCEEECCCCHHHHHCCCCCCEE LGVRCVGHGRDEWYLLSLDGVQLDWRNDSRVMLTWRARFPLQEAGETSLTLTRVQVKATA EEEEEEECCCCCEEEEEECCEEEEECCCCEEEEEEEECCCHHHCCCCEEEEEEEEEEEEC DADADEVAA CCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA