Definition Rhizobium leguminosarum bv. viciae 3841 plasmid pRL12, complete sequence.
Accession NC_008378
Length 870,021

Click here to switch to the map view.

The map label for this gene is 116249145

Identifier: 116249145

GI number: 116249145

Start: 522554

End: 523663

Strand: Direct

Name: 116249145

Synonym: pRL120481

Alternate gene names: NA

Gene position: 522554-523663 (Clockwise)

Preceding gene: 116249144

Following gene: 116249146

Centisome position: 60.06

GC content: 61.71

Gene sequence:

>1110_bases
TTGGACCTGATCAACCGGCTTCCCTTTCCGGCTATGGCCTTCCGGCAATTCGACGCGAATGGGGATTTGGATTGCGTCGT
GTCGGTTCGCGGCACTTTCGTTCACCGCCAGGGCGATGCGCTCGCCATCGCCTCGAAACAGGAAGACTTCCAGTGGGAGG
ATGCCTATGACGGCGATCCCCATGCCAGTCCTCTCCTGCGTCAGACCGATCTCACGCCAGAGAAGGTCGGAACCGACATC
ACTTTCCTCGGCAATGCTTACGCCCCGGGCGGCGAGCCAGCACCTTCATGGCAGGTCGGCCTACGCGTCGGGCAGCTTTC
CAAAAGGCTCGAAGTCCATGGCGCGCGCTTCTGGCGCCCCGTCGTCAAGGAGAAATGGGCAGGCTTTTCGGCAAAAGAAG
CAAAGCGCGAGCTGACGGATTGGCAACTGACCGAAGCCGAGCCGGCATCTTCGGTGCCGATCTGCTGGAGCAAGGCATAT
GGCGGTCAAATTCCCGGTACGGGCGACCCGGAAAACGAAACGCCAGCCGATGTCGAAGCGCGTAATCCGCTCGGTTGCGG
CATCGTCAATCTCGACATGCCTTGGGATCAAGCGCCCGTCGCGGCGCCACAAATCACGTTGCCTGGCGAGAAGTTGAACT
GGCGAGAGCCGGTCGAGCCGCAGGGACTGGGTCTCGTATCGCCCTGGTGGCGGTCCCGCCAGCAACATGCCGGCACCTAT
GACGATACTTGGCTCAACGAGCGCCACCCGCTTCTGCCTAGGGATTTCGACGCACGCTTCTGGCAATGCGCTCATTCGGA
TCTCGTTGTTATGCCGCATCTGATCGGGAACGAAGACTACCAGCTGGATCATCTGCACCCCAGCTTCGCCCTAGCCGCAG
GGCGACTGCCGGGAATCACGCTGGGGGTCCGATGTGTCGGTCATGGGCGCGATGAGTGGTATCTGCTCTCGCTGGACGGC
GTGCAACTCGACTGGCGGAACGATAGTCGCGTGATGCTGACCTGGCGGGCACGCTTTCCCCTTCAGGAGGCCGGCGAAAC
ATCGCTGACGTTGACGCGGGTCCAAGTCAAAGCGACGGCCGATGCTGACGCCGATGAGGTTGCGGCATGA

Upstream 100 bases:

>100_bases
GGCGAAGTGATCATCCTCGGCAAGACGTTCAACTTCGTCGCCACCGAACACTTCCAGATGCGCGGCAAGCCGATTGATCT
GAACTGAGGAGGAAGTTCGC

Downstream 100 bases:

>100_bases
GCATCCCGCGCGACAATTACGTCGGCGAACCCGACTATCCGGCGACCTGGACGACCAGGCAGCCGCGCGAAGGTTTGCGT
GATCTTGACGAGGCAAAGAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 369; Mature: 369

Protein sequence:

>369_residues
MDLINRLPFPAMAFRQFDANGDLDCVVSVRGTFVHRQGDALAIASKQEDFQWEDAYDGDPHASPLLRQTDLTPEKVGTDI
TFLGNAYAPGGEPAPSWQVGLRVGQLSKRLEVHGARFWRPVVKEKWAGFSAKEAKRELTDWQLTEAEPASSVPICWSKAY
GGQIPGTGDPENETPADVEARNPLGCGIVNLDMPWDQAPVAAPQITLPGEKLNWREPVEPQGLGLVSPWWRSRQQHAGTY
DDTWLNERHPLLPRDFDARFWQCAHSDLVVMPHLIGNEDYQLDHLHPSFALAAGRLPGITLGVRCVGHGRDEWYLLSLDG
VQLDWRNDSRVMLTWRARFPLQEAGETSLTLTRVQVKATADADADEVAA

Sequences:

>Translated_369_residues
MDLINRLPFPAMAFRQFDANGDLDCVVSVRGTFVHRQGDALAIASKQEDFQWEDAYDGDPHASPLLRQTDLTPEKVGTDI
TFLGNAYAPGGEPAPSWQVGLRVGQLSKRLEVHGARFWRPVVKEKWAGFSAKEAKRELTDWQLTEAEPASSVPICWSKAY
GGQIPGTGDPENETPADVEARNPLGCGIVNLDMPWDQAPVAAPQITLPGEKLNWREPVEPQGLGLVSPWWRSRQQHAGTY
DDTWLNERHPLLPRDFDARFWQCAHSDLVVMPHLIGNEDYQLDHLHPSFALAAGRLPGITLGVRCVGHGRDEWYLLSLDG
VQLDWRNDSRVMLTWRARFPLQEAGETSLTLTRVQVKATADADADEVAA
>Mature_369_residues
MDLINRLPFPAMAFRQFDANGDLDCVVSVRGTFVHRQGDALAIASKQEDFQWEDAYDGDPHASPLLRQTDLTPEKVGTDI
TFLGNAYAPGGEPAPSWQVGLRVGQLSKRLEVHGARFWRPVVKEKWAGFSAKEAKRELTDWQLTEAEPASSVPICWSKAY
GGQIPGTGDPENETPADVEARNPLGCGIVNLDMPWDQAPVAAPQITLPGEKLNWREPVEPQGLGLVSPWWRSRQQHAGTY
DDTWLNERHPLLPRDFDARFWQCAHSDLVVMPHLIGNEDYQLDHLHPSFALAAGRLPGITLGVRCVGHGRDEWYLLSLDG
VQLDWRNDSRVMLTWRARFPLQEAGETSLTLTRVQVKATADADADEVAA

Specific function: Unknown

COG id: COG5351

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41112; Mature: 41112

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLINRLPFPAMAFRQFDANGDLDCVVSVRGTFVHRQGDALAIASKQEDFQWEDAYDGDP
CCHHHHCCCCHHHHHEECCCCCEEEEEEECEEEEEECCCEEEEECCCCCCCCCCCCCCCC
HASPLLRQTDLTPEKVGTDITFLGNAYAPGGEPAPSWQVGLRVGQLSKRLEVHGARFWRP
CCCCCHHHCCCCHHHHCCCEEEECCCCCCCCCCCCCHHHHEEHHHHHHHHHHCCHHHHHH
VVKEKWAGFSAKEAKRELTDWQLTEAEPASSVPICWSKAYGGQIPGTGDPENETPADVEA
HHHHHHCCCCHHHHHHHCCCCEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
RNPLGCGIVNLDMPWDQAPVAAPQITLPGEKLNWREPVEPQGLGLVSPWWRSRQQHAGTY
CCCCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
DDTWLNERHPLLPRDFDARFWQCAHSDLVVMPHLIGNEDYQLDHLHPSFALAAGRLPGIT
CCCCCCCCCCCCCCCCCCHHHHHCCCCEEEECHHHCCCCCEEECCCCHHHHHCCCCCCEE
LGVRCVGHGRDEWYLLSLDGVQLDWRNDSRVMLTWRARFPLQEAGETSLTLTRVQVKATA
EEEEEEECCCCCEEEEEECCEEEEECCCCEEEEEEEECCCHHHCCCCEEEEEEEEEEEEC
DADADEVAA
CCCHHHHCC
>Mature Secondary Structure
MDLINRLPFPAMAFRQFDANGDLDCVVSVRGTFVHRQGDALAIASKQEDFQWEDAYDGDP
CCHHHHCCCCHHHHHEECCCCCEEEEEEECEEEEEECCCEEEEECCCCCCCCCCCCCCCC
HASPLLRQTDLTPEKVGTDITFLGNAYAPGGEPAPSWQVGLRVGQLSKRLEVHGARFWRP
CCCCCHHHCCCCHHHHCCCEEEECCCCCCCCCCCCCHHHHEEHHHHHHHHHHCCHHHHHH
VVKEKWAGFSAKEAKRELTDWQLTEAEPASSVPICWSKAYGGQIPGTGDPENETPADVEA
HHHHHHCCCCHHHHHHHCCCCEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
RNPLGCGIVNLDMPWDQAPVAAPQITLPGEKLNWREPVEPQGLGLVSPWWRSRQQHAGTY
CCCCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
DDTWLNERHPLLPRDFDARFWQCAHSDLVVMPHLIGNEDYQLDHLHPSFALAAGRLPGIT
CCCCCCCCCCCCCCCCCCHHHHHCCCCEEEECHHHCCCCCEEECCCCHHHHHCCCCCCEE
LGVRCVGHGRDEWYLLSLDGVQLDWRNDSRVMLTWRARFPLQEAGETSLTLTRVQVKATA
EEEEEEECCCCCEEEEEECCEEEEECCCCEEEEEEEECCCHHHCCCCEEEEEEEEEEEEC
DADADEVAA
CCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA