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The map label for this gene is yfhH [C]

Identifier: 116249094

GI number: 116249094

Start: 461393

End: 462232

Strand: Reverse

Name: yfhH [C]

Synonym: pRL120428

Alternate gene names: 116249094

Gene position: 462232-461393 (Counterclockwise)

Preceding gene: 116249095

Following gene: 116249091

Centisome position: 53.13

GC content: 54.64

Gene sequence:

>840_bases
GTGCCGAAAGATCGTTCGTTCCTGTTTCGCGTGAGAGAGGCGCTTCCCAACCTTCATCCGGCGGAAAAGCGATTGGCTGA
GTTCGTTTGCGATTTTCCCGGCGAACTCGCGAGCTATTCAGCACAGGAACTTGCGGCACTCGCGCACGTTTCAAAGGCCA
CTGTCACACGGTTCATCCAGCGGCTCGGCTATGAAACCTACGAGGAAGCCCGCCGCCATGCGCGGGAGGAAAAGCAAACC
GGGTCCCGGCTTTTTCTCGCGAGTTCGGCCAACGCTGCGTCGATCCAGTCGGTAGAGGCACATATAGCCCAAGGCATCGC
AAACCTTGAAGCGACGTTCATTTCTATTCCCGACAGTCAGATAGAGGCCGCAGCTGAAGCAATCCTCCATGCGCGAAAAG
TCTGGGTTGTCGGATTTCGAAGCAGTCACCCATTTGCCTCGTATCTTCAATGGCAACTGATCCAGGTCATTGAAAACATC
GTCGCCATCCCCGGTTCTGGGCAGACATTAGGCGAACATTTCGTGAGCCTTCGTGAAAAGGACGTCGTCGTCGTCTTTGC
TATGCGCCGACGAATTGCGCAGATGGACGCAATTCTCGAGCAAATCCGGAGATCGAAGGCAAATCTTCTTTACGTTACCG
ACGAAAGCGCACCCTTCGAGACGGCCGCCGGTTGGCACTTCCAATGCCAGACACTTGCGCCCGGCCCGTTGTTCAACCAC
ACCTCGGTGATGGCGTTGTGCCATTTGCTGATTACCCGGTGTTTCGAAAAAGCCGGGGTTGAAGGGCGAAAACGCCTTCG
TGACATTGAGGCCTTAAACGAGAATCTTGAAGAACTATAA

Upstream 100 bases:

>100_bases
AGTGACAAGGGCGCTCGGGCGCGGCAGCTTGAGTTTTCCGATTGCAAATCGGGAGATTGCGACGGAAAGTCCGCCGCCTG
GAGATGTCGCGGAGAGTACT

Downstream 100 bases:

>100_bases
GTCGTTTTAACTTCTAAAAAATGGCATGCGGTGTGTGTGAACTCCGAGTTTTAAACGGATTAGACCTCACCGACTGCTCC
CTACGTTTTGAGTGTGGCGG

Product: putative DNA-binding protein

Products: NA

Alternate protein names: Transcriptional Regulator RpiR Family; Transcriptional Regulator; SIS Domain Protein; RpiR-Family Transcriptional Regulatory Protein; Sugar Isomerase; Asparaginase; RpiR-Family Transcriptional Regulator; RpiR Family Transcriptional Regulatory Protein; Transcription Regulator; HTH/SIS Domain-Containing Protein; Helix-Turn-Helix Domain RpiR Family

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MPKDRSFLFRVREALPNLHPAEKRLAEFVCDFPGELASYSAQELAALAHVSKATVTRFIQRLGYETYEEARRHAREEKQT
GSRLFLASSANAASIQSVEAHIAQGIANLEATFISIPDSQIEAAAEAILHARKVWVVGFRSSHPFASYLQWQLIQVIENI
VAIPGSGQTLGEHFVSLREKDVVVVFAMRRRIAQMDAILEQIRRSKANLLYVTDESAPFETAAGWHFQCQTLAPGPLFNH
TSVMALCHLLITRCFEKAGVEGRKRLRDIEALNENLEEL

Sequences:

>Translated_279_residues
MPKDRSFLFRVREALPNLHPAEKRLAEFVCDFPGELASYSAQELAALAHVSKATVTRFIQRLGYETYEEARRHAREEKQT
GSRLFLASSANAASIQSVEAHIAQGIANLEATFISIPDSQIEAAAEAILHARKVWVVGFRSSHPFASYLQWQLIQVIENI
VAIPGSGQTLGEHFVSLREKDVVVVFAMRRRIAQMDAILEQIRRSKANLLYVTDESAPFETAAGWHFQCQTLAPGPLFNH
TSVMALCHLLITRCFEKAGVEGRKRLRDIEALNENLEEL
>Mature_278_residues
PKDRSFLFRVREALPNLHPAEKRLAEFVCDFPGELASYSAQELAALAHVSKATVTRFIQRLGYETYEEARRHAREEKQTG
SRLFLASSANAASIQSVEAHIAQGIANLEATFISIPDSQIEAAAEAILHARKVWVVGFRSSHPFASYLQWQLIQVIENIV
AIPGSGQTLGEHFVSLREKDVVVVFAMRRRIAQMDAILEQIRRSKANLLYVTDESAPFETAAGWHFQCQTLAPGPLFNHT
SVMALCHLLITRCFEKAGVEGRKRLRDIEALNENLEEL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31297; Mature: 31166

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKDRSFLFRVREALPNLHPAEKRLAEFVCDFPGELASYSAQELAALAHVSKATVTRFIQ
CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHH
RLGYETYEEARRHAREEKQTGSRLFLASSANAASIQSVEAHIAQGIANLEATFISIPDSQ
HHCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHEEECCHHH
IEAAAEAILHARKVWVVGFRSSHPFASYLQWQLIQVIENIVAIPGSGQTLGEHFVSLREK
HHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCC
DVVVVFAMRRRIAQMDAILEQIRRSKANLLYVTDESAPFETAAGWHFQCQTLAPGPLFNH
CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCH
TSVMALCHLLITRCFEKAGVEGRKRLRDIEALNENLEEL
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PKDRSFLFRVREALPNLHPAEKRLAEFVCDFPGELASYSAQELAALAHVSKATVTRFIQ
CCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHH
RLGYETYEEARRHAREEKQTGSRLFLASSANAASIQSVEAHIAQGIANLEATFISIPDSQ
HHCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHEEECCHHH
IEAAAEAILHARKVWVVGFRSSHPFASYLQWQLIQVIENIVAIPGSGQTLGEHFVSLREK
HHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCC
DVVVVFAMRRRIAQMDAILEQIRRSKANLLYVTDESAPFETAAGWHFQCQTLAPGPLFNH
CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCH
TSVMALCHLLITRCFEKAGVEGRKRLRDIEALNENLEEL
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA