Click here to switch to the map view.

The map label for this gene is yurM [H]

Identifier: 116249049

GI number: 116249049

Start: 414456

End: 415340

Strand: Reverse

Name: yurM [H]

Synonym: pRL120383

Alternate gene names: 116249049

Gene position: 415340-414456 (Counterclockwise)

Preceding gene: 116249050

Following gene: 116249048

Centisome position: 47.74

GC content: 58.98

Gene sequence:

>885_bases
GTGACAGCAGTACCGACCGACCAGACCGCAGTGCATCTGCAGGTCGAACCATCGTCGATGAAGCGGGATCCGATTCTGAT
CGGCCTCTGGATCACGCTTGTCATCGTGGCGCTCGTCTGGGTCGCGCCATTCGTCTTCATCGTCTTCACCTCCTTGAAGA
CGCCGGCGGCGGTGACGGGCACGGGCGCCTTCGTGCCGCCAACCGAGCTCGCTTTCGAAAACTACAGCGCCGCATGGAGC
CGCGGCAACTTCGCAAACTCCTTCTTCAACAGCGTCATCATCACCGTCATCAAGGTGCCGCTCGGGCTGTTCCTTTCGGC
GATGGCCGCCTATGCCCTTGCCAAGATCAAGCTGAAGATCACCAAGGCCTTGCTGCTGCTCGTGGTGTTCGGCACGATGA
TCCCCTTCCAGGTGATGCTTGCGCCGCTCTTCACCCTGGTCAATTCACTCGGCCTGATCGACACCTATCCGGGCGTCATC
CTTCCCTACATCGCCTTCGGCGTTCCCTATCAGGTTTTCATCCTGCACGGCTTCTTCAAGAGCATTCCCAAGGAGCTGTC
GGAAGCAGCACTGATCGATGGTGCCAACCACTTCATCATCTTCAGACGGATCTTTCTGCCGGTGTGCCTGCCCGTGCTTG
CCGCCCTGCTCATCCTCGACTTCGTTTCCACCTGGAACGAATTCGCCATGGCGCTGGTGCTGCTCCAGGATCAGCACATG
TGGACCTTACCGCTCGGCCTTATGTCGTTTCAGGGGCAGTTCTCGAGCAATTACGGCCAGCTCAATGCGGCCATCGTGAT
GACCGTCCTGCCGGCAACGATCGTCTATCTCATCTTCCAGCGTTACTTCGTCTCTGGCCTGACCTCCGGCGCCGTCAAAG
GCTAG

Upstream 100 bases:

>100_bases
TCGGACGAGGTGCGGCGATTTCGGTCGTGCTGCTGCTGATCACCATGGCCGTCGTCATTCCCTATCTCAAATGGACCCAG
AAGCACGAGGAGGTTGAATC

Downstream 100 bases:

>100_bases
CGACCACAAAAGCATTCACGAGGAGAATATTCTATGTCTGATGCAACAGTCGAAAAATGGGGCGTGTTCGAGGCCTCCTT
TGATGGACCCTCCGGCGGAA

Product: putative permease component of ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MTAVPTDQTAVHLQVEPSSMKRDPILIGLWITLVIVALVWVAPFVFIVFTSLKTPAAVTGTGAFVPPTELAFENYSAAWS
RGNFANSFFNSVIITVIKVPLGLFLSAMAAYALAKIKLKITKALLLLVVFGTMIPFQVMLAPLFTLVNSLGLIDTYPGVI
LPYIAFGVPYQVFILHGFFKSIPKELSEAALIDGANHFIIFRRIFLPVCLPVLAALLILDFVSTWNEFAMALVLLQDQHM
WTLPLGLMSFQGQFSSNYGQLNAAIVMTVLPATIVYLIFQRYFVSGLTSGAVKG

Sequences:

>Translated_294_residues
MTAVPTDQTAVHLQVEPSSMKRDPILIGLWITLVIVALVWVAPFVFIVFTSLKTPAAVTGTGAFVPPTELAFENYSAAWS
RGNFANSFFNSVIITVIKVPLGLFLSAMAAYALAKIKLKITKALLLLVVFGTMIPFQVMLAPLFTLVNSLGLIDTYPGVI
LPYIAFGVPYQVFILHGFFKSIPKELSEAALIDGANHFIIFRRIFLPVCLPVLAALLILDFVSTWNEFAMALVLLQDQHM
WTLPLGLMSFQGQFSSNYGQLNAAIVMTVLPATIVYLIFQRYFVSGLTSGAVKG
>Mature_293_residues
TAVPTDQTAVHLQVEPSSMKRDPILIGLWITLVIVALVWVAPFVFIVFTSLKTPAAVTGTGAFVPPTELAFENYSAAWSR
GNFANSFFNSVIITVIKVPLGLFLSAMAAYALAKIKLKITKALLLLVVFGTMIPFQVMLAPLFTLVNSLGLIDTYPGVIL
PYIAFGVPYQVFILHGFFKSIPKELSEAALIDGANHFIIFRRIFLPVCLPVLAALLILDFVSTWNEFAMALVLLQDQHMW
TLPLGLMSFQGQFSSNYGQLNAAIVMTVLPATIVYLIFQRYFVSGLTSGAVKG

Specific function: Probably part of the binding-protein-dependent transport system yurMNO. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=278, Percent_Identity=29.4964028776978, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1790464, Length=212, Percent_Identity=35.377358490566, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1789860, Length=256, Percent_Identity=27.34375, Blast_Score=97, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32184; Mature: 32053

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAVPTDQTAVHLQVEPSSMKRDPILIGLWITLVIVALVWVAPFVFIVFTSLKTPAAVTG
CCCCCCCCCEEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECC
TGAFVPPTELAFENYSAAWSRGNFANSFFNSVIITVIKVPLGLFLSAMAAYALAKIKLKI
CCCCCCCHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TKALLLLVVFGTMIPFQVMLAPLFTLVNSLGLIDTYPGVILPYIAFGVPYQVFILHGFFK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHCCCHHHHHHHHHHH
SIPKELSEAALIDGANHFIIFRRIFLPVCLPVLAALLILDFVSTWNEFAMALVLLQDQHM
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
WTLPLGLMSFQGQFSSNYGQLNAAIVMTVLPATIVYLIFQRYFVSGLTSGAVKG
EEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TAVPTDQTAVHLQVEPSSMKRDPILIGLWITLVIVALVWVAPFVFIVFTSLKTPAAVTG
CCCCCCCCEEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECC
TGAFVPPTELAFENYSAAWSRGNFANSFFNSVIITVIKVPLGLFLSAMAAYALAKIKLKI
CCCCCCCHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TKALLLLVVFGTMIPFQVMLAPLFTLVNSLGLIDTYPGVILPYIAFGVPYQVFILHGFFK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHCCCHHHHHHHHHHH
SIPKELSEAALIDGANHFIIFRRIFLPVCLPVLAALLILDFVSTWNEFAMALVLLQDQHM
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
WTLPLGLMSFQGQFSSNYGQLNAAIVMTVLPATIVYLIFQRYFVSGLTSGAVKG
EEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]