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The map label for this gene is sbcD [C]

Identifier: 116248940

GI number: 116248940

Start: 283657

End: 284781

Strand: Reverse

Name: sbcD [C]

Synonym: pRL120270

Alternate gene names: 116248940

Gene position: 284781-283657 (Counterclockwise)

Preceding gene: 116248941

Following gene: 116248939

Centisome position: 32.73

GC content: 64.09

Gene sequence:

>1125_bases
ATGTTTTCCTTTCTGCACAGTTCGGACCTTCATATTGGCAAGCGGTTTGGCAATCTTCCGGAGGATTTGAGAGGGCGCCT
GCGCGAGGCGCGGCATGGCGTGATCGGGAGACTCGCCAGTGCGGCACGAGAGCATGGGGCTGATGTCATCCTGCTCGCGG
GCGACACATTCGATACCGAGACGCCGACGCCGGCCGTGCTTCGGCAAGCACTTGGCGAGATGGCCCGGAATGCTTCGCTT
CGCTGGGTTCTGCTTCCGGGCAATCACGATTCACTGCTGGCGGACCAGCTCTGGAGTGCTGCGCGCGGCGTGGTGCCCGA
CAATGTCATCCTGGCGACGGAAGCGGCGCCCCTTCCGCTTGGACCTGATGTCATCCTGCTGCCGGCGCCTTGCACGACCA
GGCGGCCGGGCCGCGACCTGACCGAATGGATGACGGGTGCAGCCACACCGGACGGCTCCATCCGCATTGGCCTCGCCCAT
GGCCCGATCCAGGAATTCTCGGAGGATGCTACGGCCACCAACGTGATTGCGCCGAACCGCGCGGCGCTGGCCGGCCTCGA
TTACATGGCGCTCGGCGATTGGCACGGATCGGTCGCGGTCGACCCCAGAACGCACTACAGCGGCGCGCCCGAGCCTGACC
GTTTCAAGCATGACCGGCCGGGGCAGGCGATGGTCGTTTCCATTGCCGGGCAGGGAGCGATGCCGACGACGACGACTGTC
GCGACCGCCAGCTTTTCCTGGCAGACATTGCACCTTCCACTGCTGGCATCGGAAGACGGTGTTGAAGCGCTGAAGGCTGC
ATTGCCGGAACCGTTCGCGCGGCGACAAACCCTGTTGCGCGTCGCGCTGTCCGGCCGTGCCCGATTGAACGGGCGCACAG
CAATGACCAGCCTGCTGCAGCAGGTCGCGCCGGAATTTGCGCATCTGGAGATCGATACCGAACTGCTGGGGACCGATTGC
GAGAGCGATGATCTCGAGATCATCGACCGAGCCGGTGCACTGCGCGATACTGCGGATTTGCTGCTTGCCGAAAGCCTCGA
CCAATCCCGCTCGGGCGATGACAGGCGTGTGGCGCGTGAGGCGTTGATCCGCCTGTTTTCCTATTGCGAGGCGATTGATC
GATGA

Upstream 100 bases:

>100_bases
ACGAGACTGCGGACGAGGCCTACTGCCGCGCGTCTGAAAAGACGCGGGCGCTGTAGGCCATGCTCGAAAGCTCGCGGCGC
ATCGCAAACATGGCTGGTTA

Downstream 100 bases:

>100_bases
AACTCAACGCTCTTCGCCTCCACAATGTCAAACGCTTCGCCGGCCGCGGCATATCCGTCGAAGGAATCGCCGACGGCGTC
AATGTGCTGAGCGCTGCCAA

Product: putative exonuclease

Products: NA

Alternate protein names: DNA Repair Exonuclease; Exonuclease; Exonuclease SbcD; Ser/Thr Protein Phosphatase Family Protein; Exonuclease SbcD Family Protein; Calcineurin-Like Phosphoesterase Family; DNA Repair Exonuclease Or Phosphoesterase; DNA Repair Exonuclease SbcD

Number of amino acids: Translated: 374; Mature: 374

Protein sequence:

>374_residues
MFSFLHSSDLHIGKRFGNLPEDLRGRLREARHGVIGRLASAAREHGADVILLAGDTFDTETPTPAVLRQALGEMARNASL
RWVLLPGNHDSLLADQLWSAARGVVPDNVILATEAAPLPLGPDVILLPAPCTTRRPGRDLTEWMTGAATPDGSIRIGLAH
GPIQEFSEDATATNVIAPNRAALAGLDYMALGDWHGSVAVDPRTHYSGAPEPDRFKHDRPGQAMVVSIAGQGAMPTTTTV
ATASFSWQTLHLPLLASEDGVEALKAALPEPFARRQTLLRVALSGRARLNGRTAMTSLLQQVAPEFAHLEIDTELLGTDC
ESDDLEIIDRAGALRDTADLLLAESLDQSRSGDDRRVAREALIRLFSYCEAIDR

Sequences:

>Translated_374_residues
MFSFLHSSDLHIGKRFGNLPEDLRGRLREARHGVIGRLASAAREHGADVILLAGDTFDTETPTPAVLRQALGEMARNASL
RWVLLPGNHDSLLADQLWSAARGVVPDNVILATEAAPLPLGPDVILLPAPCTTRRPGRDLTEWMTGAATPDGSIRIGLAH
GPIQEFSEDATATNVIAPNRAALAGLDYMALGDWHGSVAVDPRTHYSGAPEPDRFKHDRPGQAMVVSIAGQGAMPTTTTV
ATASFSWQTLHLPLLASEDGVEALKAALPEPFARRQTLLRVALSGRARLNGRTAMTSLLQQVAPEFAHLEIDTELLGTDC
ESDDLEIIDRAGALRDTADLLLAESLDQSRSGDDRRVAREALIRLFSYCEAIDR
>Mature_374_residues
MFSFLHSSDLHIGKRFGNLPEDLRGRLREARHGVIGRLASAAREHGADVILLAGDTFDTETPTPAVLRQALGEMARNASL
RWVLLPGNHDSLLADQLWSAARGVVPDNVILATEAAPLPLGPDVILLPAPCTTRRPGRDLTEWMTGAATPDGSIRIGLAH
GPIQEFSEDATATNVIAPNRAALAGLDYMALGDWHGSVAVDPRTHYSGAPEPDRFKHDRPGQAMVVSIAGQGAMPTTTTV
ATASFSWQTLHLPLLASEDGVEALKAALPEPFARRQTLLRVALSGRARLNGRTAMTSLLQQVAPEFAHLEIDTELLGTDC
ESDDLEIIDRAGALRDTADLLLAESLDQSRSGDDRRVAREALIRLFSYCEAIDR

Specific function: Sbccd Cleaves DNA Hairpin Structures. These Structures Can Inhibit DNA Replication And Are Intermediates In Certain DNA Recombination Reactions. The Complex Acts As A 3'->5' Double Strand Exonuclease That Can Open Hairpins. It Also Has A 5' Single-Strand

COG id: COG0420

COG function: function code L; DNA repair exonuclease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40298; Mature: 40298

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSFLHSSDLHIGKRFGNLPEDLRGRLREARHGVIGRLASAAREHGADVILLAGDTFDTE
CCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
TPTPAVLRQALGEMARNASLRWVLLPGNHDSLLADQLWSAARGVVPDNVILATEAAPLPL
CCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCC
GPDVILLPAPCTTRRPGRDLTEWMTGAATPDGSIRIGLAHGPIQEFSEDATATNVIAPNR
CCCEEEECCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCHHHHHCCCCCCEEECCCC
AALAGLDYMALGDWHGSVAVDPRTHYSGAPEPDRFKHDRPGQAMVVSIAGQGAMPTTTTV
HHHHCCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEE
ATASFSWQTLHLPLLASEDGVEALKAALPEPFARRQTLLRVALSGRARLNGRTAMTSLLQ
EEECCCEEEEEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
QVAPEFAHLEIDTELLGTDCESDDLEIIDRAGALRDTADLLLAESLDQSRSGDDRRVARE
HHCCHHEEEEECHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
ALIRLFSYCEAIDR
HHHHHHHHHHHHCC
>Mature Secondary Structure
MFSFLHSSDLHIGKRFGNLPEDLRGRLREARHGVIGRLASAAREHGADVILLAGDTFDTE
CCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
TPTPAVLRQALGEMARNASLRWVLLPGNHDSLLADQLWSAARGVVPDNVILATEAAPLPL
CCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCC
GPDVILLPAPCTTRRPGRDLTEWMTGAATPDGSIRIGLAHGPIQEFSEDATATNVIAPNR
CCCEEEECCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCHHHHHCCCCCCEEECCCC
AALAGLDYMALGDWHGSVAVDPRTHYSGAPEPDRFKHDRPGQAMVVSIAGQGAMPTTTTV
HHHHCCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEE
ATASFSWQTLHLPLLASEDGVEALKAALPEPFARRQTLLRVALSGRARLNGRTAMTSLLQ
EEECCCEEEEEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
QVAPEFAHLEIDTELLGTDCESDDLEIIDRAGALRDTADLLLAESLDQSRSGDDRRVARE
HHCCHHEEEEECHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
ALIRLFSYCEAIDR
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on ester bonds [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA