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The map label for this gene is yciR [C]

Identifier: 116248929

GI number: 116248929

Start: 271151

End: 272965

Strand: Reverse

Name: yciR [C]

Synonym: pRL120259

Alternate gene names: 116248929

Gene position: 272965-271151 (Counterclockwise)

Preceding gene: 116248939

Following gene: 116248928

Centisome position: 31.37

GC content: 58.51

Gene sequence:

>1815_bases
ATGATCCTTGAGTTGCAGAATGCCATTCTGGAAATGATTGCCAAAGGGGAACCGCTGGCAGCAACGATAGAGCAACTTTG
CCTCAAGGTTGAGGCCGCCGTTCCTGGAATCATCGCTTCGGTGCTGACGTTCGACGGGAGCCGTCTTCACACACTCGCTG
GCCCCTCCCTTCCGCCTGACTATTCAGCGGCGGTCGACAATCTTGAAGCCGGTCCTCTTGCAGGCTCCTGCGGCGCTGCT
GCTTATTTCGGAGAAGCGGTCGTTGTCACCGACATCGAGACCGATCCTCGTTGGCAGGATTTCAAGTCCTTGGTCCTTCC
GCTGGGGTTGAAGGCTTGCTGGTCCAGCCCGATCAAGCGTGGCGAGCGGGTGATTGGTAGCTTCGCCTTCTACTATCGAG
ACCACCGCGGTCCAAAGGCCCTCGAACGGGACCTCGTCGAGGCTTGTGTCCATCTCTGCACAATCGCCATCGATCGCGAA
GAACGGGTGATGGAACGTCAGCGGCTGACATACAGCGACGCTTTGACGGGGCTGTCGAATCGCGCTCGTTTTAACCAGCT
TCTCGCCGAAGATCTGCCTCGGTCCGGGCGCGCCTGGGGCATCTTGCTGGTGGACATCGACAACTTGAAACTCGTGAACG
ACACGTTCGGGCACGCAGCCGGCGACGCATTGATTCAAGTGGTTGCGGACCGGGTCGCCACGACAGCAGGCTCCCAAAAC
ACGTTTAGGCTAGGTGGAGATGAGTTTGCTGTCATTGTGTCGGACGACAAAGACCTTGATCTGAATGCGAGGGCAACCGA
CATCCTCAAAGCACTGTCCTCTCCTTCAACGTGCGACGGTCATGTCGTCTTTCCCGCCGCGACGATTGGCGGTGCGTTGG
CGGAGACCGAAACAAACCCTGACCAGACCCGCCAGAACGCCGATCTGGCGCTCTATCATGCGAAAGAACACAATCGCGGC
CGGTACGTGCAACACTATCCCGGCCTGGGCACAGCCCTGACCAGACGCTTCAGGGCAGTTCGGGACGTGGGCGTCGCCCT
GGAAGACGATCGGATCGACGCGCATTACCAGCCGATCTTGCGCCTGGATACGCGGGAAATCGTCGGTTTCGAAGCCCTGT
GTCGAATGACCACGCCTTCCGGCGAAATCATAGCCGCCGCGCATTTCCATGAGGCGACGAAAGACGCGCATATTGCTGCT
GAGCTGACTCAACGGATGTTGCTGAGGGTTGCGAGAGACATCCGCAGCTGGCTCGCCCGGGGCCTTCCTCTCCAGCATGT
CGGCATCAACCTGTCCGCCGCAGACTTTCGCGGCGGTAATCTGCAAGACAGGCTGTGCCGAATTTTCGGGGAAGCGGAGG
TTCCTCTCAAGCACATCATCCTCGAAGTGACGGAATCGGTTTATCTCGGACAACGGGACTATGTCGTAGCGGACGAGATA
AAGGCTCTTCGGTCCAAGGGTTTGCGGGTTGCCCTCGACGACTTCGGTACGGGCTACGCGTCTTTGACCCACCTGCTGAC
GGTGCCGGTCGACATTATCAAAATCGACAAGTCCTTCATCGACCGCATGGTGCCGGGCGACGCTGGGACCTTCATCGTTG
AGGGCCTGATCGGAATAGCTGACAAGCTGGGAATCCGGGTCGTCGCAGAAGGGATCGAAACAGAACTCCAAGCTGTTCAA
TTGAGCCAGCTCGGCTGCAAGCTCGGACAGGGCTATCTGTTTTCGAAAGCAGTCGATCGAACGGTTGCCGCGGCCATTTT
AGAGCAGCATGGACAACGGCTCGACCAAGACAAGACCCGTGCCGGAGCCCTATAG

Upstream 100 bases:

>100_bases
GGCTCGCGAGGTGCGTCTATTCGATCAAAATCTAATCAACGGCGTAACCTGATTTGAAAGTCGGTTTGGTACGGAGGGTC
TCCTTCCGGGAAGTGACGTC

Downstream 100 bases:

>100_bases
CCTGAGCGAGGTTTTCGCGCTCGGGCCCGCCCCGGATAACTGAGACCACGCTTGAGTACCAAGATTATTTTGAACGGATC
AGAGATGCGAAAACGGATAC

Product: GGDEF domain/EAL domain/GAF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 604; Mature: 604

Protein sequence:

>604_residues
MILELQNAILEMIAKGEPLAATIEQLCLKVEAAVPGIIASVLTFDGSRLHTLAGPSLPPDYSAAVDNLEAGPLAGSCGAA
AYFGEAVVVTDIETDPRWQDFKSLVLPLGLKACWSSPIKRGERVIGSFAFYYRDHRGPKALERDLVEACVHLCTIAIDRE
ERVMERQRLTYSDALTGLSNRARFNQLLAEDLPRSGRAWGILLVDIDNLKLVNDTFGHAAGDALIQVVADRVATTAGSQN
TFRLGGDEFAVIVSDDKDLDLNARATDILKALSSPSTCDGHVVFPAATIGGALAETETNPDQTRQNADLALYHAKEHNRG
RYVQHYPGLGTALTRRFRAVRDVGVALEDDRIDAHYQPILRLDTREIVGFEALCRMTTPSGEIIAAAHFHEATKDAHIAA
ELTQRMLLRVARDIRSWLARGLPLQHVGINLSAADFRGGNLQDRLCRIFGEAEVPLKHIILEVTESVYLGQRDYVVADEI
KALRSKGLRVALDDFGTGYASLTHLLTVPVDIIKIDKSFIDRMVPGDAGTFIVEGLIGIADKLGIRVVAEGIETELQAVQ
LSQLGCKLGQGYLFSKAVDRTVAAAILEQHGQRLDQDKTRAGAL

Sequences:

>Translated_604_residues
MILELQNAILEMIAKGEPLAATIEQLCLKVEAAVPGIIASVLTFDGSRLHTLAGPSLPPDYSAAVDNLEAGPLAGSCGAA
AYFGEAVVVTDIETDPRWQDFKSLVLPLGLKACWSSPIKRGERVIGSFAFYYRDHRGPKALERDLVEACVHLCTIAIDRE
ERVMERQRLTYSDALTGLSNRARFNQLLAEDLPRSGRAWGILLVDIDNLKLVNDTFGHAAGDALIQVVADRVATTAGSQN
TFRLGGDEFAVIVSDDKDLDLNARATDILKALSSPSTCDGHVVFPAATIGGALAETETNPDQTRQNADLALYHAKEHNRG
RYVQHYPGLGTALTRRFRAVRDVGVALEDDRIDAHYQPILRLDTREIVGFEALCRMTTPSGEIIAAAHFHEATKDAHIAA
ELTQRMLLRVARDIRSWLARGLPLQHVGINLSAADFRGGNLQDRLCRIFGEAEVPLKHIILEVTESVYLGQRDYVVADEI
KALRSKGLRVALDDFGTGYASLTHLLTVPVDIIKIDKSFIDRMVPGDAGTFIVEGLIGIADKLGIRVVAEGIETELQAVQ
LSQLGCKLGQGYLFSKAVDRTVAAAILEQHGQRLDQDKTRAGAL
>Mature_604_residues
MILELQNAILEMIAKGEPLAATIEQLCLKVEAAVPGIIASVLTFDGSRLHTLAGPSLPPDYSAAVDNLEAGPLAGSCGAA
AYFGEAVVVTDIETDPRWQDFKSLVLPLGLKACWSSPIKRGERVIGSFAFYYRDHRGPKALERDLVEACVHLCTIAIDRE
ERVMERQRLTYSDALTGLSNRARFNQLLAEDLPRSGRAWGILLVDIDNLKLVNDTFGHAAGDALIQVVADRVATTAGSQN
TFRLGGDEFAVIVSDDKDLDLNARATDILKALSSPSTCDGHVVFPAATIGGALAETETNPDQTRQNADLALYHAKEHNRG
RYVQHYPGLGTALTRRFRAVRDVGVALEDDRIDAHYQPILRLDTREIVGFEALCRMTTPSGEIIAAAHFHEATKDAHIAA
ELTQRMLLRVARDIRSWLARGLPLQHVGINLSAADFRGGNLQDRLCRIFGEAEVPLKHIILEVTESVYLGQRDYVVADEI
KALRSKGLRVALDDFGTGYASLTHLLTVPVDIIKIDKSFIDRMVPGDAGTFIVEGLIGIADKLGIRVVAEGIETELQAVQ
LSQLGCKLGQGYLFSKAVDRTVAAAILEQHGQRLDQDKTRAGAL

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=428, Percent_Identity=30.8411214953271, Blast_Score=182, Evalue=5e-47,
Organism=Escherichia coli, GI87081921, Length=429, Percent_Identity=25.4079254079254, Blast_Score=160, Evalue=2e-40,
Organism=Escherichia coli, GI1790496, Length=249, Percent_Identity=34.9397590361446, Blast_Score=142, Evalue=9e-35,
Organism=Escherichia coli, GI87081743, Length=245, Percent_Identity=35.9183673469388, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI226510982, Length=424, Percent_Identity=24.7641509433962, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI87081980, Length=251, Percent_Identity=32.2709163346614, Blast_Score=119, Evalue=5e-28,
Organism=Escherichia coli, GI87081845, Length=235, Percent_Identity=34.468085106383, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1786507, Length=268, Percent_Identity=30.9701492537313, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI1787055, Length=243, Percent_Identity=31.2757201646091, Blast_Score=105, Evalue=8e-24,
Organism=Escherichia coli, GI1788502, Length=251, Percent_Identity=29.8804780876494, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI87082096, Length=247, Percent_Identity=28.3400809716599, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI1788381, Length=436, Percent_Identity=24.0825688073394, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI87081977, Length=266, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1788849, Length=438, Percent_Identity=23.972602739726, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1788956, Length=160, Percent_Identity=33.125, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1786584, Length=167, Percent_Identity=32.3353293413174, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787410, Length=227, Percent_Identity=29.9559471365639, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1787262, Length=163, Percent_Identity=29.4478527607362, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI145693134, Length=155, Percent_Identity=28.3870967741935, Blast_Score=67, Evalue=5e-12,
Organism=Escherichia coli, GI87081881, Length=176, Percent_Identity=27.8409090909091, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 65746; Mature: 65746

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILELQNAILEMIAKGEPLAATIEQLCLKVEAAVPGIIASVLTFDGSRLHTLAGPSLPPD
CEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC
YSAAVDNLEAGPLAGSCGAAAYFGEAVVVTDIETDPRWQDFKSLVLPLGLKACWSSPIKR
HHHHHCCCCCCCCCCCCCCHHHCCCEEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHH
GERVIGSFAFYYRDHRGPKALERDLVEACVHLCTIAIDREERVMERQRLTYSDALTGLSN
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHH
RARFNQLLAEDLPRSGRAWGILLVDIDNLKLVNDTFGHAAGDALIQVVADRVATTAGSQN
HHHHHHHHHHHCCCCCCEEEEEEEEECCEEEECHHCCHHHHHHHHHHHHHHHHHCCCCCC
TFRLGGDEFAVIVSDDKDLDLNARATDILKALSSPSTCDGHVVFPAATIGGALAETETNP
EEEECCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEHHHHCCHHHCCCCCH
DQTRQNADLALYHAKEHNRGRYVQHYPGLGTALTRRFRAVRDVGVALEDDRIDAHYQPIL
HHHHCCCCEEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCEEECCCCCCCCCHHH
RLDTREIVGFEALCRMTTPSGEIIAAAHFHEATKDAHIAAELTQRMLLRVARDIRSWLAR
EECHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLPLQHVGINLSAADFRGGNLQDRLCRIFGEAEVPLKHIILEVTESVYLGQRDYVVADEI
CCCEEHCCCEEEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHH
KALRSKGLRVALDDFGTGYASLTHLLTVPVDIIKIDKSFIDRMVPGDAGTFIVEGLIGIA
HHHHHCCCEEEECCCCCHHHHHHHHHHCCHHHEECCHHHHHHHCCCCCHHHHHHHHHHHH
DKLGIRVVAEGIETELQAVQLSQLGCKLGQGYLFSKAVDRTVAAAILEQHGQRLDQDKTR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
AGAL
CCCC
>Mature Secondary Structure
MILELQNAILEMIAKGEPLAATIEQLCLKVEAAVPGIIASVLTFDGSRLHTLAGPSLPPD
CEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC
YSAAVDNLEAGPLAGSCGAAAYFGEAVVVTDIETDPRWQDFKSLVLPLGLKACWSSPIKR
HHHHHCCCCCCCCCCCCCCHHHCCCEEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHH
GERVIGSFAFYYRDHRGPKALERDLVEACVHLCTIAIDREERVMERQRLTYSDALTGLSN
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHH
RARFNQLLAEDLPRSGRAWGILLVDIDNLKLVNDTFGHAAGDALIQVVADRVATTAGSQN
HHHHHHHHHHHCCCCCCEEEEEEEEECCEEEECHHCCHHHHHHHHHHHHHHHHHCCCCCC
TFRLGGDEFAVIVSDDKDLDLNARATDILKALSSPSTCDGHVVFPAATIGGALAETETNP
EEEECCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEHHHHCCHHHCCCCCH
DQTRQNADLALYHAKEHNRGRYVQHYPGLGTALTRRFRAVRDVGVALEDDRIDAHYQPIL
HHHHCCCCEEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCEEECCCCCCCCCHHH
RLDTREIVGFEALCRMTTPSGEIIAAAHFHEATKDAHIAAELTQRMLLRVARDIRSWLAR
EECHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLPLQHVGINLSAADFRGGNLQDRLCRIFGEAEVPLKHIILEVTESVYLGQRDYVVADEI
CCCEEHCCCEEEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHH
KALRSKGLRVALDDFGTGYASLTHLLTVPVDIIKIDKSFIDRMVPGDAGTFIVEGLIGIA
HHHHHCCCEEEECCCCCHHHHHHHHHHCCHHHEECCHHHHHHHCCCCCHHHHHHHHHHHH
DKLGIRVVAEGIETELQAVQLSQLGCKLGQGYLFSKAVDRTVAAAILEQHGQRLDQDKTR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
AGAL
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]