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The map label for this gene is glpD [H]

Identifier: 116248867

GI number: 116248867

Start: 203836

End: 205587

Strand: Reverse

Name: glpD [H]

Synonym: pRL120197

Alternate gene names: 116248867

Gene position: 205587-203836 (Counterclockwise)

Preceding gene: 116248868

Following gene: 116248860

Centisome position: 23.63

GC content: 63.64

Gene sequence:

>1752_bases
ATGAGCATGACCCCCGATTTGCAGCAGCGCTTCTCGAACCTCGGCGAGAACGATATCGACGTTTTGATCATCGGGGCGGG
CATCAACGGCGCCGGCCTGTTTCGCGACCTCTCGCTACAGGGTGTCAATTGCCTGATCGTCGACAAGGCCGACTTTGGCT
CCGGCACGAGCGCCGCACCATCGCGGCTCATACACGGCGGCCTGAAATATCTGGAAACGGGCGAATTCGGACTGGTTGCG
CAGTCGACGCTTGAGCGCAACCTCCTGCTCAAGAACGCGCCGCATTGCGTCGAACCGCTGCCGACCTTCATTCCGGTCTT
TTCCTGGACGCGCGGCATCTGGGCAGCGATCCGGACGCTCTTCGGGTCGAAGACGGCGCCACGCAGCCGTGGTGCGGTTC
TCATCAAGATCGGGCTTCGGCTCTACGATTTCTTCGGTTCGCGCGACCAGGTCATGCCGCGCCACCGGCTGATCCTGAAG
AAACAGGCGCGCAGGGAGATGCCGCATATTACCCCCGCCATCGTCGCCGGCGGCATCTATTACGATGCCAAGATCAGTAG
GCCGGAGCGGCTCGTCTATGAGCTCGTCAATGATGGTCTCGATACGAATGCGGGGAGCCTCGCGGCAAATTTCGCGACAC
TGGCTGCCGTTTCAGAAGGGCGTTTGACCTTCCGGCAGCCCGATGGTCGCGAGTTCAGCGTCGCTCCCAAGCTGGTCGTC
AACGCGGCAGGTCCCTGGATCGATCAGGTCAACACTTTGCTCGGCGCTCCATCGCGGCTGATCGGCGGCACGAAGGGTTC
CCATATCCTGCTTGACCATCCCGAATTGGTGCGAAGCCTCAACGGCCACATGATCTATTTCGAGGCCGACGACGGCCGCA
TCTGCCTGGTCTACGACTATCTCGGGTTGGCGCTGGTCGGGTCGACCGACATTCCGGCAGGTGATCCGGACAACGTCTCC
TGCGAGGAGCCGGAAACTGAATATTTCCTCGAAAGCATCCGCTCGCTGCTGCCGACGCTCCGCTTCGATCGCGATCAGAT
CGTTTACAGCTATAGCGGCATCCGCCCGCTACCGGCATCGGATGCGACCGCACCGGGGCTGATCAGCCGCGACCACTCCG
CGCCGGTGAAGGAACCCGAGGACGGCAGACCTTTTCCGGTCGTTTCGCTGGTCGGAGGCAAGTGGACGACGTTCCGCGGC
TTTGCGGAAGAGGTTGCCGACACCGTTCTCTCCCGGCTGCAGCGCAGCCGCAGCCAGTCGACACGCTATCTGGCGATCGG
CGGCGGCAAGGCCTTTCCGGCTGATGCTGAGCAGCGTAACGCCTGGATCAGCGATACCGCGGCGCGCGGCGGCGTCGCTG
CCGAGCGTGCCGGCGAACTGCTCGGCCGCTACGGCACGACGGCTGTGGCCCTGCTTTCTTCCCCTTCAGGCTATTCCGAC
GAACAGCGCCTGACGGGTGCGCCGCGTTACAGTCTCCGGGAGATCGACTGGGTCGCCCGGAACGAACTCGTTATCCACCT
GTCGGACATCGTGATGCGCCGCACGACGCTTGCGATCGAGGGTCGATTGACGCTGGAAGGCTTACGGGAAATCGCCGGCG
TTGCCGAGGCGGCGCTCGGCTGGGATGGCGAACGGACGGCCAGCGAAATCCAGGACGTTGTCAGCCAGCTGAGCCGCTTC
CACGGCCAAGCACTGACAGGCAAGCCTGCCGCCGCCGAGCCGGAAAAGGCACCCCGCCCGGCGTTGGGCTAG

Upstream 100 bases:

>100_bases
GACGCGATGATCTCCCTTTGGCCTAGGATTGCCGCGCTTGCGCCGGAGCAATCGGCAAACTGAAAAGACAAATGCCTGCT
GCGGCGGGCGATTTAGGACG

Downstream 100 bases:

>100_bases
AGCGTTTCAGGAGAAAGCCGGATCGAGGGAACCGGATTTATAACGCTTCGCCATTTCCGAAACGGGAAGGGGCGTGATGC
GGCCGGCCATGCCGGCAGTG

Product: putative glycerol-3-phosphate dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 583; Mature: 582

Protein sequence:

>583_residues
MSMTPDLQQRFSNLGENDIDVLIIGAGINGAGLFRDLSLQGVNCLIVDKADFGSGTSAAPSRLIHGGLKYLETGEFGLVA
QSTLERNLLLKNAPHCVEPLPTFIPVFSWTRGIWAAIRTLFGSKTAPRSRGAVLIKIGLRLYDFFGSRDQVMPRHRLILK
KQARREMPHITPAIVAGGIYYDAKISRPERLVYELVNDGLDTNAGSLAANFATLAAVSEGRLTFRQPDGREFSVAPKLVV
NAAGPWIDQVNTLLGAPSRLIGGTKGSHILLDHPELVRSLNGHMIYFEADDGRICLVYDYLGLALVGSTDIPAGDPDNVS
CEEPETEYFLESIRSLLPTLRFDRDQIVYSYSGIRPLPASDATAPGLISRDHSAPVKEPEDGRPFPVVSLVGGKWTTFRG
FAEEVADTVLSRLQRSRSQSTRYLAIGGGKAFPADAEQRNAWISDTAARGGVAAERAGELLGRYGTTAVALLSSPSGYSD
EQRLTGAPRYSLREIDWVARNELVIHLSDIVMRRTTLAIEGRLTLEGLREIAGVAEAALGWDGERTASEIQDVVSQLSRF
HGQALTGKPAAAEPEKAPRPALG

Sequences:

>Translated_583_residues
MSMTPDLQQRFSNLGENDIDVLIIGAGINGAGLFRDLSLQGVNCLIVDKADFGSGTSAAPSRLIHGGLKYLETGEFGLVA
QSTLERNLLLKNAPHCVEPLPTFIPVFSWTRGIWAAIRTLFGSKTAPRSRGAVLIKIGLRLYDFFGSRDQVMPRHRLILK
KQARREMPHITPAIVAGGIYYDAKISRPERLVYELVNDGLDTNAGSLAANFATLAAVSEGRLTFRQPDGREFSVAPKLVV
NAAGPWIDQVNTLLGAPSRLIGGTKGSHILLDHPELVRSLNGHMIYFEADDGRICLVYDYLGLALVGSTDIPAGDPDNVS
CEEPETEYFLESIRSLLPTLRFDRDQIVYSYSGIRPLPASDATAPGLISRDHSAPVKEPEDGRPFPVVSLVGGKWTTFRG
FAEEVADTVLSRLQRSRSQSTRYLAIGGGKAFPADAEQRNAWISDTAARGGVAAERAGELLGRYGTTAVALLSSPSGYSD
EQRLTGAPRYSLREIDWVARNELVIHLSDIVMRRTTLAIEGRLTLEGLREIAGVAEAALGWDGERTASEIQDVVSQLSRF
HGQALTGKPAAAEPEKAPRPALG
>Mature_582_residues
SMTPDLQQRFSNLGENDIDVLIIGAGINGAGLFRDLSLQGVNCLIVDKADFGSGTSAAPSRLIHGGLKYLETGEFGLVAQ
STLERNLLLKNAPHCVEPLPTFIPVFSWTRGIWAAIRTLFGSKTAPRSRGAVLIKIGLRLYDFFGSRDQVMPRHRLILKK
QARREMPHITPAIVAGGIYYDAKISRPERLVYELVNDGLDTNAGSLAANFATLAAVSEGRLTFRQPDGREFSVAPKLVVN
AAGPWIDQVNTLLGAPSRLIGGTKGSHILLDHPELVRSLNGHMIYFEADDGRICLVYDYLGLALVGSTDIPAGDPDNVSC
EEPETEYFLESIRSLLPTLRFDRDQIVYSYSGIRPLPASDATAPGLISRDHSAPVKEPEDGRPFPVVSLVGGKWTTFRGF
AEEVADTVLSRLQRSRSQSTRYLAIGGGKAFPADAEQRNAWISDTAARGGVAAERAGELLGRYGTTAVALLSSPSGYSDE
QRLTGAPRYSLREIDWVARNELVIHLSDIVMRRTTLAIEGRLTLEGLREIAGVAEAALGWDGERTASEIQDVVSQLSRFH
GQALTGKPAAAEPEKAPRPALG

Specific function: Conversion Of Glycerol 3-Phosphate To Dihydroxyacetone. Uses Molecular Oxygen Or Nitrate As Electron Acceptor. [C]

COG id: COG0578

COG function: function code C; Glycerol-3-phosphate dehydrogenase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI285002233, Length=579, Percent_Identity=25.0431778929188, Blast_Score=140, Evalue=2e-33,
Organism=Homo sapiens, GI285002231, Length=579, Percent_Identity=25.0431778929188, Blast_Score=140, Evalue=2e-33,
Organism=Escherichia coli, GI2367226, Length=492, Percent_Identity=29.0650406504065, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI1788574, Length=438, Percent_Identity=26.2557077625571, Blast_Score=83, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI115534726, Length=559, Percent_Identity=24.865831842576, Blast_Score=130, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI17509253, Length=593, Percent_Identity=25.8010118043845, Blast_Score=128, Evalue=9e-30,
Organism=Saccharomyces cerevisiae, GI6322036, Length=624, Percent_Identity=23.2371794871795, Blast_Score=122, Evalue=1e-28,
Organism=Drosophila melanogaster, GI161077125, Length=613, Percent_Identity=26.1011419249592, Blast_Score=149, Evalue=8e-36,
Organism=Drosophila melanogaster, GI24653942, Length=613, Percent_Identity=26.1011419249592, Blast_Score=149, Evalue=8e-36,
Organism=Drosophila melanogaster, GI24653944, Length=613, Percent_Identity=26.1011419249592, Blast_Score=149, Evalue=8e-36,
Organism=Drosophila melanogaster, GI20130025, Length=613, Percent_Identity=26.1011419249592, Blast_Score=149, Evalue=8e-36,
Organism=Drosophila melanogaster, GI24586295, Length=584, Percent_Identity=24.3150684931507, Blast_Score=102, Evalue=6e-22,
Organism=Drosophila melanogaster, GI19921278, Length=596, Percent_Identity=23.6577181208054, Blast_Score=100, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR000447 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: =1.1.5.3 [H]

Molecular weight: Translated: 63179; Mature: 63047

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMTPDLQQRFSNLGENDIDVLIIGAGINGAGLFRDLSLQGVNCLIVDKADFGSGTSAAP
CCCCHHHHHHHHHCCCCCCEEEEEECCCCCCHHHEECCCCCCEEEEEECCCCCCCCCCHH
SRLIHGGLKYLETGEFGLVAQSTLERNLLLKNAPHCVEPLPTFIPVFSWTRGIWAAIRTL
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHH
FGSKTAPRSRGAVLIKIGLRLYDFFGSRDQVMPRHRLILKKQARREMPHITPAIVAGGIY
HCCCCCCCCCCEEEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCEE
YDAKISRPERLVYELVNDGLDTNAGSLAANFATLAAVSEGRLTFRQPDGREFSVAPKLVV
EECCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCEEECCCEEEE
NAAGPWIDQVNTLLGAPSRLIGGTKGSHILLDHPELVRSLNGHMIYFEADDGRICLVYDY
ECCCCHHHHHHHHHCCCHHHHCCCCCCEEEECCHHHHHHCCCCEEEEECCCCCEEEEEEC
LGLALVGSTDIPAGDPDNVSCEEPETEYFLESIRSLLPTLRFDRDQIVYSYSGIRPLPAS
CCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC
DATAPGLISRDHSAPVKEPEDGRPFPVVSLVGGKWTTFRGFAEEVADTVLSRLQRSRSQS
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
TRYLAIGGGKAFPADAEQRNAWISDTAARGGVAAERAGELLGRYGTTAVALLSSPSGYSD
CEEEEEECCCCCCCCHHHCCCCCCHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCC
EQRLTGAPRYSLREIDWVARNELVIHLSDIVMRRTTLAIEGRLTLEGLREIAGVAEAALG
CHHCCCCCCCCHHHHHHHCCCCEEEEHHHHHHHHHEEEEECCEEHHHHHHHHHHHHHHHC
WDGERTASEIQDVVSQLSRFHGQALTGKPAAAEPEKAPRPALG
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SMTPDLQQRFSNLGENDIDVLIIGAGINGAGLFRDLSLQGVNCLIVDKADFGSGTSAAP
CCCHHHHHHHHHCCCCCCEEEEEECCCCCCHHHEECCCCCCEEEEEECCCCCCCCCCHH
SRLIHGGLKYLETGEFGLVAQSTLERNLLLKNAPHCVEPLPTFIPVFSWTRGIWAAIRTL
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHH
FGSKTAPRSRGAVLIKIGLRLYDFFGSRDQVMPRHRLILKKQARREMPHITPAIVAGGIY
HCCCCCCCCCCEEEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCEE
YDAKISRPERLVYELVNDGLDTNAGSLAANFATLAAVSEGRLTFRQPDGREFSVAPKLVV
EECCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCEEECCCEEEE
NAAGPWIDQVNTLLGAPSRLIGGTKGSHILLDHPELVRSLNGHMIYFEADDGRICLVYDY
ECCCCHHHHHHHHHCCCHHHHCCCCCCEEEECCHHHHHHCCCCEEEEECCCCCEEEEEEC
LGLALVGSTDIPAGDPDNVSCEEPETEYFLESIRSLLPTLRFDRDQIVYSYSGIRPLPAS
CCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC
DATAPGLISRDHSAPVKEPEDGRPFPVVSLVGGKWTTFRGFAEEVADTVLSRLQRSRSQS
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
TRYLAIGGGKAFPADAEQRNAWISDTAARGGVAAERAGELLGRYGTTAVALLSSPSGYSD
CEEEEEECCCCCCCCHHHCCCCCCHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCC
EQRLTGAPRYSLREIDWVARNELVIHLSDIVMRRTTLAIEGRLTLEGLREIAGVAEAALG
CHHCCCCCCCCHHHHHHHCCCCEEEEHHHHHHHHHEEEEECCEEHHHHHHHHHHHHHHHC
WDGERTASEIQDVVSQLSRFHGQALTGKPAAAEPEKAPRPALG
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]