| Definition | Rhizobium leguminosarum bv. viciae 3841 plasmid pRL12, complete sequence. |
|---|---|
| Accession | NC_008378 |
| Length | 870,021 |
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The map label for this gene is 116248788
Identifier: 116248788
GI number: 116248788
Start: 109220
End: 111271
Strand: Direct
Name: 116248788
Synonym: pRL120114
Alternate gene names: NA
Gene position: 109220-111271 (Clockwise)
Preceding gene: 116248787
Following gene: 116248789
Centisome position: 12.55
GC content: 60.23
Gene sequence:
>2052_bases ATGCCGAACACCACAAACAAGCCGTTGCGCTACCGCCAGATCCATCTCGACTTCCATACGTCGGAACATATTCCCGGCAT CGGCGTCGACTTCGATCCGGATATTTTCGTTTCAACGCTGAAGGCGGCGCATGTCGACTCGATCACGATCTTCGCCAAGT GCCATCACGGCTGGTCCTACTATCCGACCAAGGTCGGCAAGCCGCATCCGCGGCTGGCCCGCCCGGACCTCCTCGGCGAC ATGGTGAAGGCGCTGTCGGCGGCCGATATCGAAAGCCCGATTTATATATCGGTACAGTGGGACGAGCTGACGGCGCGCGA ACATCCCGAATGGCGCGCCATGACCGCGTCGAACCAATACCATCACGACCGTCCGGACGACCCTTCGGCGGGCAAGCAGC TTAGCCCGGCGTGGCATACGCTCTGCCTCAACCATGCCGGCCTACGGAAATACATTCTCGACCAGGCGCGCGAAGTCGCG CAAAGCTATCCCACGCAGGGTCTGTTCTTCGATATCATCCTCACGCCGGATTGTGTATGCCCGGCTTGCATCGAGCGCAT GCAGTGCGAGGGCCTCGATCCAGAAAATTCGGCGGACCGGCTGAAGAACGACGAGGCCGTCAACGAACAGTTCCGGCGTG AAACGAGCGAGGCGCTGTTCAAGGAGTTCCCTAATCTCCGCGTCTTCTACAATTGCGGACATATCCACAAGCAGGGCCCG AAGCGCTTTTCCACCTATTCTCATCTCGAGCTCGAAAGCCTGCCCACCGGCGGTTGGGGTTACGATCACTTTCCGTCCAG CGCGCGCTACGCGGCAACGCTCGGCATGGATTTCCTGGCACATACAGGCAAGTTCCACACCTCGTGGGGCGAGTTCGGCG GTTTCAAGCACCCTGATGCGTTGGAATATGAATGTGCGCAAATGATCGCGCTCGGATCGAAGTGCCTGGTCGGCGACCAG TTGCATCCGAACGGCGCCATCAACCCGGATACTTACGCTTCGATCGCGCCGGCTTATCGACGCGTTGAAAAGCTGGAGCC GTTTCTGGATGGCGCGAAGCAGGTCTCCGAGATCGCTATATTGTCCGCCGAGCACATGAACCCCAAGGGCGCGCGCAATC ACCCGAGCGACGATGGCGCGGCACAGATGCTGCAGGAGCTGAAGCGGCCCTTCGACGTGCTCGACAGTTCCGCTCGTTTC GAGGAGTACCGACTGCTGATCCTGCCGGATGAAATCCCGGTCGATGCTGCCCTTGCGGCGCGGCTGAAAGCCTATCTCGC CGGTGGCGGCAAGATCATCGCCTCCTGGCATTCGGGCATCGGCGAAGATGGTGCATTTGCTGTCGATTTCGGCATTGAGC GGCAGGCAACGCCGATCGCGTCCAGACCGAGCTATGTGAAGGCAGGCAAGGACCTTGATCCGTCCATGCCGAAAACGGCC TTCGTTTTCTACGATGAAGCCGAAACCGTCCGCGCGGTCGGCGCAACGGTGCTGGCCGGTATTTACCCCTCCTACTTCAA CCGGTCTTACAAACATTTCTGCTCGCACCAGCATGCTCCCGACGATACAGCCGCTGATATGCTTGGCGCTGCCGTGACCG AGCATGGGGGCATCGCCTATATTGCCTACCCGATCTTTCGGCTTTACCGGGCCATTGGCCAGCCGCTTTACAAATATGTT GTTCGAGGGCTTCTCGATCGTCTCGTTCCCGATCCGGCGATGGTTACCGATCTTCCCTCATCCGGCCGGGCAACGCTGAC CCGGCAGATTGGGCACAATCGCCACATCCTGCATCTTCTTTACGGACCGCCGCAGATCCGCGGCAAGGACGTTCGTGGCG ATGACGGCTCGAGGCGGGTGATGGAAATGATCGAGGACATCCCGGCGATCGGCCCGGTTAACGCCAGCGTGCGGTTGCCG GCGAAGCCGAAGCGGGTTTTCGATGCCATGACCGGAGAGGATCTGGCCTGGGAAGCCGGCGCAGACGGCGCCATTAGCAT CACAGTGCCGCGACTGCATATCCACAGCGCCGTGGTGTTCGAAGGCGTCTGA
Upstream 100 bases:
>100_bases GCGATCATCACGACAATCGTTCCCCTCCTCGTTTTTCTTGTCTTCCAACGTCAGTTCGCCGCCGGCTCTCAAACCCGCAC CGGCGCAAAGGAATAGGACC
Downstream 100 bases:
>100_bases TGCAGGTTGAGGTAGGGGAACCGTCGGACATTGCTCTTGCCGCCCGCAACGCTGGTGGGCGGCAGAGCGCTGGGCTATAC GACGGAAAAGCGCTTCCCCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 683; Mature: 682
Protein sequence:
>683_residues MPNTTNKPLRYRQIHLDFHTSEHIPGIGVDFDPDIFVSTLKAAHVDSITIFAKCHHGWSYYPTKVGKPHPRLARPDLLGD MVKALSAADIESPIYISVQWDELTAREHPEWRAMTASNQYHHDRPDDPSAGKQLSPAWHTLCLNHAGLRKYILDQAREVA QSYPTQGLFFDIILTPDCVCPACIERMQCEGLDPENSADRLKNDEAVNEQFRRETSEALFKEFPNLRVFYNCGHIHKQGP KRFSTYSHLELESLPTGGWGYDHFPSSARYAATLGMDFLAHTGKFHTSWGEFGGFKHPDALEYECAQMIALGSKCLVGDQ LHPNGAINPDTYASIAPAYRRVEKLEPFLDGAKQVSEIAILSAEHMNPKGARNHPSDDGAAQMLQELKRPFDVLDSSARF EEYRLLILPDEIPVDAALAARLKAYLAGGGKIIASWHSGIGEDGAFAVDFGIERQATPIASRPSYVKAGKDLDPSMPKTA FVFYDEAETVRAVGATVLAGIYPSYFNRSYKHFCSHQHAPDDTAADMLGAAVTEHGGIAYIAYPIFRLYRAIGQPLYKYV VRGLLDRLVPDPAMVTDLPSSGRATLTRQIGHNRHILHLLYGPPQIRGKDVRGDDGSRRVMEMIEDIPAIGPVNASVRLP AKPKRVFDAMTGEDLAWEAGADGAISITVPRLHIHSAVVFEGV
Sequences:
>Translated_683_residues MPNTTNKPLRYRQIHLDFHTSEHIPGIGVDFDPDIFVSTLKAAHVDSITIFAKCHHGWSYYPTKVGKPHPRLARPDLLGD MVKALSAADIESPIYISVQWDELTAREHPEWRAMTASNQYHHDRPDDPSAGKQLSPAWHTLCLNHAGLRKYILDQAREVA QSYPTQGLFFDIILTPDCVCPACIERMQCEGLDPENSADRLKNDEAVNEQFRRETSEALFKEFPNLRVFYNCGHIHKQGP KRFSTYSHLELESLPTGGWGYDHFPSSARYAATLGMDFLAHTGKFHTSWGEFGGFKHPDALEYECAQMIALGSKCLVGDQ LHPNGAINPDTYASIAPAYRRVEKLEPFLDGAKQVSEIAILSAEHMNPKGARNHPSDDGAAQMLQELKRPFDVLDSSARF EEYRLLILPDEIPVDAALAARLKAYLAGGGKIIASWHSGIGEDGAFAVDFGIERQATPIASRPSYVKAGKDLDPSMPKTA FVFYDEAETVRAVGATVLAGIYPSYFNRSYKHFCSHQHAPDDTAADMLGAAVTEHGGIAYIAYPIFRLYRAIGQPLYKYV VRGLLDRLVPDPAMVTDLPSSGRATLTRQIGHNRHILHLLYGPPQIRGKDVRGDDGSRRVMEMIEDIPAIGPVNASVRLP AKPKRVFDAMTGEDLAWEAGADGAISITVPRLHIHSAVVFEGV >Mature_682_residues PNTTNKPLRYRQIHLDFHTSEHIPGIGVDFDPDIFVSTLKAAHVDSITIFAKCHHGWSYYPTKVGKPHPRLARPDLLGDM VKALSAADIESPIYISVQWDELTAREHPEWRAMTASNQYHHDRPDDPSAGKQLSPAWHTLCLNHAGLRKYILDQAREVAQ SYPTQGLFFDIILTPDCVCPACIERMQCEGLDPENSADRLKNDEAVNEQFRRETSEALFKEFPNLRVFYNCGHIHKQGPK RFSTYSHLELESLPTGGWGYDHFPSSARYAATLGMDFLAHTGKFHTSWGEFGGFKHPDALEYECAQMIALGSKCLVGDQL HPNGAINPDTYASIAPAYRRVEKLEPFLDGAKQVSEIAILSAEHMNPKGARNHPSDDGAAQMLQELKRPFDVLDSSARFE EYRLLILPDEIPVDAALAARLKAYLAGGGKIIASWHSGIGEDGAFAVDFGIERQATPIASRPSYVKAGKDLDPSMPKTAF VFYDEAETVRAVGATVLAGIYPSYFNRSYKHFCSHQHAPDDTAADMLGAAVTEHGGIAYIAYPIFRLYRAIGQPLYKYVV RGLLDRLVPDPAMVTDLPSSGRATLTRQIGHNRHILHLLYGPPQIRGKDVRGDDGSRRVMEMIEDIPAIGPVNASVRLPA KPKRVFDAMTGEDLAWEAGADGAISITVPRLHIHSAVVFEGV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 75707; Mature: 75576
Theoretical pI: Translated: 6.56; Mature: 6.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNTTNKPLRYRQIHLDFHTSEHIPGIGVDFDPDIFVSTLKAAHVDSITIFAKCHHGWSY CCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCC YPTKVGKPHPRLARPDLLGDMVKALSAADIESPIYISVQWDELTAREHPEWRAMTASNQY CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECHHCCCCCCCCEEEECCCCC HHDRPDDPSAGKQLSPAWHTLCLNHAGLRKYILDQAREVAQSYPTQGLFFDIILTPDCVC CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC PACIERMQCEGLDPENSADRLKNDEAVNEQFRRETSEALFKEFPNLRVFYNCGHIHKQGP HHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC KRFSTYSHLELESLPTGGWGYDHFPSSARYAATLGMDFLAHTGKFHTSWGEFGGFKHPDA HHHCCCCCEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCC LEYECAQMIALGSKCLVGDQLHPNGAINPDTYASIAPAYRRVEKLEPFLDGAKQVSEIAI HHHHHHHHHHCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSAEHMNPKGARNHPSDDGAAQMLQELKRPFDVLDSSARFEEYRLLILPDEIPVDAALAA HHHHCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHH RLKAYLAGGGKIIASWHSGIGEDGAFAVDFGIERQATPIASRPSYVKAGKDLDPSMPKTA HHHHHHCCCCEEEEEHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCCEE FVFYDEAETVRAVGATVLAGIYPSYFNRSYKHFCSHQHAPDDTAADMLGAAVTEHGGIAY EEEECCHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEE IAYPIFRLYRAIGQPLYKYVVRGLLDRLVPDPAMVTDLPSSGRATLTRQIGHNRHILHLL HHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHEECCCCCCCHHHHHHHCCCCEEEEEE YGPPQIRGKDVRGDDGSRRVMEMIEDIPAIGPVNASVRLPAKPKRVFDAMTGEDLAWEAG ECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEECCCCHHHHHHHCCCCCCEEECC ADGAISITVPRLHIHSAVVFEGV CCCEEEEEECCEEECEEEEECCC >Mature Secondary Structure PNTTNKPLRYRQIHLDFHTSEHIPGIGVDFDPDIFVSTLKAAHVDSITIFAKCHHGWSY CCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCC YPTKVGKPHPRLARPDLLGDMVKALSAADIESPIYISVQWDELTAREHPEWRAMTASNQY CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECHHCCCCCCCCEEEECCCCC HHDRPDDPSAGKQLSPAWHTLCLNHAGLRKYILDQAREVAQSYPTQGLFFDIILTPDCVC CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC PACIERMQCEGLDPENSADRLKNDEAVNEQFRRETSEALFKEFPNLRVFYNCGHIHKQGP HHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC KRFSTYSHLELESLPTGGWGYDHFPSSARYAATLGMDFLAHTGKFHTSWGEFGGFKHPDA HHHCCCCCEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCC LEYECAQMIALGSKCLVGDQLHPNGAINPDTYASIAPAYRRVEKLEPFLDGAKQVSEIAI HHHHHHHHHHCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSAEHMNPKGARNHPSDDGAAQMLQELKRPFDVLDSSARFEEYRLLILPDEIPVDAALAA HHHHCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHH RLKAYLAGGGKIIASWHSGIGEDGAFAVDFGIERQATPIASRPSYVKAGKDLDPSMPKTA HHHHHHCCCCEEEEEHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCCEE FVFYDEAETVRAVGATVLAGIYPSYFNRSYKHFCSHQHAPDDTAADMLGAAVTEHGGIAY EEEECCHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEE IAYPIFRLYRAIGQPLYKYVVRGLLDRLVPDPAMVTDLPSSGRATLTRQIGHNRHILHLL HHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHEECCCCCCCHHHHHHHCCCCEEEEEE YGPPQIRGKDVRGDDGSRRVMEMIEDIPAIGPVNASVRLPAKPKRVFDAMTGEDLAWEAG ECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEECCCCHHHHHHHCCCCCCEEECC ADGAISITVPRLHIHSAVVFEGV CCCEEEEEECCEEECEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA