Click here to switch to the map view.

The map label for this gene is ydfH [C]

Identifier: 116248753

GI number: 116248753

Start: 77283

End: 78044

Strand: Direct

Name: ydfH [C]

Synonym: pRL120077

Alternate gene names: 116248753

Gene position: 77283-78044 (Clockwise)

Preceding gene: 116248752

Following gene: 116248754

Centisome position: 8.88

GC content: 57.61

Gene sequence:

>762_bases
ATGCAAGATAGCCACACATCTGAGAGCACGCAGAAGACCATTGAGGAGACGATCGTCTCCGGGATTCTTTCAGCCAAAAT
TCGGCCTGGGACGCGTCTGAGTGAAAACCAGCTGGCAACGCTCTTCGGCGTGTCTCGGACCCGCGTTCGGGAAGCCATGA
TGCGTTTGGAAACACGCGGTATCGTGCATGTCAGTCCGAGACGGGGCTGGTTTGTCGTCGAGCCGTCCGCTGAAGAGGCG
ATCGCGGTCTATGAGGCACGGCGCGTCATCGAGGCCGGGTTGCTGCGCAGCATGCGTGTGCTGACGGACGAAGGAGGCAA
AGCTCTCGACGTGCATTTGAACGAGGAAAAGACCGCAATGGCTGCGGGCGACCGCCAGCGCCTGACGTATTTGATGGGCG
ATTTCCACATCCGCATCGCAGAATTGAGCGGGAACGCCATCATCGTCGATATCCTCCGCGATCTCACCGCGAGGACGATC
CTCATTTCGATGCTCTATCAGTCTGAATTTCACGCAGCACAGTCTCATGACGGGCATTGCCGCATCTTCGAGGCCATGCA
AGCGGGCGATTTCGCCAGAGCTGCCGAGCTCTCTATCGAACATCTGGACGAAGTGGAAATGGGCCTCGACCTTACCACGC
GCCCCGATCCGCTCTCGGAACTGCGCAGTTCCCTGTCACTTCCTCCCAAGGCCGTGCCCTCGGTCTCCCAACTGTCAGAC
CCAAAAAACCACAACTTCAAAGGAGCAATTAAAACATGCTGA

Upstream 100 bases:

>100_bases
GTCTGCATTCTCAGCGTGCAAATTCCAGGGGGAGGGATCCGAGACATCTTGAAAATCCTAAACGCAGAATTTTGGCACGA
GCTTTGCTTTCCTGTCTTGT

Downstream 100 bases:

>100_bases
CAAGACGAGTCTTCTTCGCAATCGCGACCCTGGCTGCAACCTTCGGCTTCGGCTCCGCGTCTTACGCCGATGCTCTTGCC
GACATCACGGCGCGCGGTAC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; GntR-Family Transcriptional Regulator; Transcriptional Regulator Protein GntR Family; Transcriptional Regulator Protein; GntR Family Regulatory Protein; GntR Family Transcription Regulator Protein; GntR Domain-Containing Protein; Transcriptional Regulator Gntr Family; FCD Domain Protein; GntR Family Regulatory; Bacterial Regulatory Protein; GntR Family Transcription Regulator; Transcription Regulator Protein; Regulatory Protein GntR HTHGntR; Transcriptional Regulator GntR Family Protein; GntR-Type Regulator; TRANSCRIPTIONal REGULATOR GntR Family; Glycosyltransferase

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MQDSHTSESTQKTIEETIVSGILSAKIRPGTRLSENQLATLFGVSRTRVREAMMRLETRGIVHVSPRRGWFVVEPSAEEA
IAVYEARRVIEAGLLRSMRVLTDEGGKALDVHLNEEKTAMAAGDRQRLTYLMGDFHIRIAELSGNAIIVDILRDLTARTI
LISMLYQSEFHAAQSHDGHCRIFEAMQAGDFARAAELSIEHLDEVEMGLDLTTRPDPLSELRSSLSLPPKAVPSVSQLSD
PKNHNFKGAIKTC

Sequences:

>Translated_253_residues
MQDSHTSESTQKTIEETIVSGILSAKIRPGTRLSENQLATLFGVSRTRVREAMMRLETRGIVHVSPRRGWFVVEPSAEEA
IAVYEARRVIEAGLLRSMRVLTDEGGKALDVHLNEEKTAMAAGDRQRLTYLMGDFHIRIAELSGNAIIVDILRDLTARTI
LISMLYQSEFHAAQSHDGHCRIFEAMQAGDFARAAELSIEHLDEVEMGLDLTTRPDPLSELRSSLSLPPKAVPSVSQLSD
PKNHNFKGAIKTC
>Mature_253_residues
MQDSHTSESTQKTIEETIVSGILSAKIRPGTRLSENQLATLFGVSRTRVREAMMRLETRGIVHVSPRRGWFVVEPSAEEA
IAVYEARRVIEAGLLRSMRVLTDEGGKALDVHLNEEKTAMAAGDRQRLTYLMGDFHIRIAELSGNAIIVDILRDLTARTI
LISMLYQSEFHAAQSHDGHCRIFEAMQAGDFARAAELSIEHLDEVEMGLDLTTRPDPLSELRSSLSLPPKAVPSVSQLSD
PKNHNFKGAIKTC

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787821, Length=203, Percent_Identity=24.6305418719212, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28061; Mature: 28061

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDSHTSESTQKTIEETIVSGILSAKIRPGTRLSENQLATLFGVSRTRVREAMMRLETRG
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCC
IVHVSPRRGWFVVEPSAEEAIAVYEARRVIEAGLLRSMRVLTDEGGKALDVHLNEEKTAM
EEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHH
AAGDRQRLTYLMGDFHIRIAELSGNAIIVDILRDLTARTILISMLYQSEFHAAQSHDGHC
HCCCHHHHHHEECCEEEEEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
RIFEAMQAGDFARAAELSIEHLDEVEMGLDLTTRPDPLSELRSSLSLPPKAVPSVSQLSD
HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCC
PKNHNFKGAIKTC
CCCCCCCCCCCCC
>Mature Secondary Structure
MQDSHTSESTQKTIEETIVSGILSAKIRPGTRLSENQLATLFGVSRTRVREAMMRLETRG
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCC
IVHVSPRRGWFVVEPSAEEAIAVYEARRVIEAGLLRSMRVLTDEGGKALDVHLNEEKTAM
EEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHH
AAGDRQRLTYLMGDFHIRIAELSGNAIIVDILRDLTARTILISMLYQSEFHAAQSHDGHC
HCCCHHHHHHEECCEEEEEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
RIFEAMQAGDFARAAELSIEHLDEVEMGLDLTTRPDPLSELRSSLSLPPKAVPSVSQLSD
HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCC
PKNHNFKGAIKTC
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA