Click here to switch to the map view.

The map label for this gene is stbB

Identifier: 116248752

GI number: 116248752

Start: 76664

End: 77089

Strand: Direct

Name: stbB

Synonym: pRL120076

Alternate gene names: NA

Gene position: 76664-77089 (Clockwise)

Preceding gene: 116248751

Following gene: 116248753

Centisome position: 8.81

GC content: 58.45

Gene sequence:

>426_bases
ATGATTATCCTCGATACGAACGTTGTTTCCGAGGCGATGAAACCCACGCCCGACGAAGCCGTGAAATTCTGGCTCGATGA
GCAGGCAGCCGAAACCCTGTTCCTTTCTAGCGTCACGATCGCCGAACTGATGTTTGGAATCGGCGCGCTCCCGGCTGGCA
AGCGCAGGGAAAGGCTCTCCGACGCGTTGGACGGTCTGATGGAGCTCTTCGAAAGCCGTATTTTGGCTTTCGACATCACA
GCGGCACGGCACTATGCCGATCTCGCCGTCAAGGCCCGAGCCGCTGGCAGAGGATTCCCCACTCCGGATGGCTATATCGC
CGCCATCGCAGCATCAAAAGGGTTCGCCGTCGCCACGCGCGATACAAGTGCTTTCAACGCTGCGGGCGTTAAAGTGATCA
ATCCCTGGGCGGCTTCGACCGCATAA

Upstream 100 bases:

>100_bases
CACTCGCCGAACGGAGCCGCCGCCTCGGACTGACGAATGAGGACTTTGCCGTTCTGGACCAAGCTCGCGACACATTGCCT
GCAAAGCCGATGAGCTTTGA

Downstream 100 bases:

>100_bases
GGTTGTTCGGCCAGTGAACACGGCGCCATGTGAGCGGGCCGACGCTGATCCAGGTTTGCAATGAGTTGCAGGCACTCGCT
CAATTTGCGCTCAGTCTGCA

Product: putative plasmid stability protein StbB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MIILDTNVVSEAMKPTPDEAVKFWLDEQAAETLFLSSVTIAELMFGIGALPAGKRRERLSDALDGLMELFESRILAFDIT
AARHYADLAVKARAAGRGFPTPDGYIAAIAASKGFAVATRDTSAFNAAGVKVINPWAASTA

Sequences:

>Translated_141_residues
MIILDTNVVSEAMKPTPDEAVKFWLDEQAAETLFLSSVTIAELMFGIGALPAGKRRERLSDALDGLMELFESRILAFDIT
AARHYADLAVKARAAGRGFPTPDGYIAAIAASKGFAVATRDTSAFNAAGVKVINPWAASTA
>Mature_141_residues
MIILDTNVVSEAMKPTPDEAVKFWLDEQAAETLFLSSVTIAELMFGIGALPAGKRRERLSDALDGLMELFESRILAFDIT
AARHYADLAVKARAAGRGFPTPDGYIAAIAASKGFAVATRDTSAFNAAGVKVINPWAASTA

Specific function: Involved in plasmid stability (Potential) [H]

COG id: COG1487

COG function: function code R; Predicted nucleic acid-binding protein, contains PIN domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002716 [H]

Pfam domain/function: PF01850 PIN [H]

EC number: NA

Molecular weight: Translated: 14976; Mature: 14976

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIILDTNVVSEAMKPTPDEAVKFWLDEQAAETLFLSSVTIAELMFGIGALPAGKRRERLS
CEEECCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
DALDGLMELFESRILAFDITAARHYADLAVKARAAGRGFPTPDGYIAAIAASKGFAVATR
HHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEC
DTSAFNAAGVKVINPWAASTA
CCCCCCCCCEEEECCCCCCCC
>Mature Secondary Structure
MIILDTNVVSEAMKPTPDEAVKFWLDEQAAETLFLSSVTIAELMFGIGALPAGKRRERLS
CEEECCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
DALDGLMELFESRILAFDITAARHYADLAVKARAAGRGFPTPDGYIAAIAASKGFAVATR
HHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEC
DTSAFNAAGVKVINPWAASTA
CCCCCCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]