Definition Rhizobium leguminosarum bv. viciae 3841 plasmid pRL12, complete sequence.
Accession NC_008378
Length 870,021

Click here to switch to the map view.

The map label for this gene is 116248735

Identifier: 116248735

GI number: 116248735

Start: 58681

End: 59760

Strand: Reverse

Name: 116248735

Synonym: pRL120059

Alternate gene names: NA

Gene position: 59760-58681 (Counterclockwise)

Preceding gene: 116248736

Following gene: 116248734

Centisome position: 6.87

GC content: 65.65

Gene sequence:

>1080_bases
ATGACCCCGTCGGCCATCTCGAGAAGGCAATTTCTGCTGGCCGGAATAGCGCTTCAGGTTCTAGGGCCCAAGATTGCCGC
CGCGCAGCCGACGGGCACCAGCGATCATGGCATCGGCGGATCTGGACTTTCCATCCAGGGCGGCGGGGAGAACGAAGATC
ACGGCATCGGCGGGACGGGCATCGTTGGAACCATCCAGGGTTTTGGAAGCATCATCGTCAACAACATCCACATCCCGTTC
AGTGCGACGACACCGATCGAAATCGACGGCCGACGCGTTCGCGCGAGCGCGATGAAGGTCGGCCATGTCGCCCGGGTGCT
GCTGACGGGCAAGCTTGCCGCCCGCATCACCATCGCCAGCGAAGTCCAGGGCCGCATCGACCGGATAAACAAGACCGGCA
TGACCGTACTGGGGCAAACGATCGACACGACGGGTGTCGCGACGAAGGGCCTGCGCAAGGGCAAGCGGGTCGCCGTGTTC
GGCATCCGCAAACCTGACGGTACGATCATTGCCCGGCGCATCGAGCCTCGCTCCGTTTCCGAAGGCGCCCATGTTCGAGG
CATCCCCGTCAAGAGCAGCAATCGCGTCCTGATCGGCGGTCTTTCGCTTGGAAGCACGCATGGATACCTGGCCGGCAAGC
AAACGCTCGTGCGTCTCAAGGCCGTCGCCGATCGATTGATCATCACGCGCATTCAGGCTGAACCCCTCGTGCCGGGCTTG
AAACACGGCATCGTCAACGTCGAGACCTTCCGGCCGACCGATAAGGACCGGCCGGGCGCGGGACCCGGAGGGTCCGCGCC
TTTCGGCTCGGGGCCGCCATCTCCTGATGGTCATGGCTTCGTCGATGTCGGCGTGCGGGACTCAAGCAGAATGACCGGCT
TTCCCGACGGGCGCATTCCGGACGGCTTCGGTTCGCGACGTCCAGGAGGACCTTCGGATCGACCGCCGCCCGATCGTTCG
CCCTTCGGCAGAGGCGGGCCGGACCGAGATTTTCCCGCTCCGGATAGAGGCGGACCGCCACCGCAGGACGGCCCGCCGCC
TGGGCCGCCGCCACCGGGCCCAGGCCCGGGTCCGCGCTGA

Upstream 100 bases:

>100_bases
CCGGCGGCAACAGCCGCTGGATCGCCGGGCTCTATGTCATGACCGAGGAGGGCGAGGCCGATCTTCAGGCAGACACCGCA
TCCAAGACGGAGACGGACGA

Downstream 100 bases:

>100_bases
AAACGCTGTCGCCGCATGTTGACAAATGGGAAATTTTCCCATTTATTGTTCATGCGAATTCTGCTTCGGGTGATTCCAGG
GAGGGTTTGCCGATTGGCTA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 359; Mature: 358

Protein sequence:

>359_residues
MTPSAISRRQFLLAGIALQVLGPKIAAAQPTGTSDHGIGGSGLSIQGGGENEDHGIGGTGIVGTIQGFGSIIVNNIHIPF
SATTPIEIDGRRVRASAMKVGHVARVLLTGKLAARITIASEVQGRIDRINKTGMTVLGQTIDTTGVATKGLRKGKRVAVF
GIRKPDGTIIARRIEPRSVSEGAHVRGIPVKSSNRVLIGGLSLGSTHGYLAGKQTLVRLKAVADRLIITRIQAEPLVPGL
KHGIVNVETFRPTDKDRPGAGPGGSAPFGSGPPSPDGHGFVDVGVRDSSRMTGFPDGRIPDGFGSRRPGGPSDRPPPDRS
PFGRGGPDRDFPAPDRGGPPPQDGPPPGPPPPGPGPGPR

Sequences:

>Translated_359_residues
MTPSAISRRQFLLAGIALQVLGPKIAAAQPTGTSDHGIGGSGLSIQGGGENEDHGIGGTGIVGTIQGFGSIIVNNIHIPF
SATTPIEIDGRRVRASAMKVGHVARVLLTGKLAARITIASEVQGRIDRINKTGMTVLGQTIDTTGVATKGLRKGKRVAVF
GIRKPDGTIIARRIEPRSVSEGAHVRGIPVKSSNRVLIGGLSLGSTHGYLAGKQTLVRLKAVADRLIITRIQAEPLVPGL
KHGIVNVETFRPTDKDRPGAGPGGSAPFGSGPPSPDGHGFVDVGVRDSSRMTGFPDGRIPDGFGSRRPGGPSDRPPPDRS
PFGRGGPDRDFPAPDRGGPPPQDGPPPGPPPPGPGPGPR
>Mature_358_residues
TPSAISRRQFLLAGIALQVLGPKIAAAQPTGTSDHGIGGSGLSIQGGGENEDHGIGGTGIVGTIQGFGSIIVNNIHIPFS
ATTPIEIDGRRVRASAMKVGHVARVLLTGKLAARITIASEVQGRIDRINKTGMTVLGQTIDTTGVATKGLRKGKRVAVFG
IRKPDGTIIARRIEPRSVSEGAHVRGIPVKSSNRVLIGGLSLGSTHGYLAGKQTLVRLKAVADRLIITRIQAEPLVPGLK
HGIVNVETFRPTDKDRPGAGPGGSAPFGSGPPSPDGHGFVDVGVRDSSRMTGFPDGRIPDGFGSRRPGGPSDRPPPDRSP
FGRGGPDRDFPAPDRGGPPPQDGPPPGPPPPGPGPGPR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36920; Mature: 36788

Theoretical pI: Translated: 11.70; Mature: 11.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPSAISRRQFLLAGIALQVLGPKIAAAQPTGTSDHGIGGSGLSIQGGGENEDHGIGGTG
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
IVGTIQGFGSIIVNNIHIPFSATTPIEIDGRRVRASAMKVGHVARVLLTGKLAARITIAS
CEEEHHHCCEEEEEEEEECCCCCCCEEECCCEEEHHHHHHHHHHHHHHHCCEEEEEEEHH
EVQGRIDRINKTGMTVLGQTIDTTGVATKGLRKGKRVAVFGIRKPDGTIIARRIEPRSVS
HHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHCCCEEEEEEEECCCCCEEEEECCCCCCC
EGAHVRGIPVKSSNRVLIGGLSLGSTHGYLAGKQTLVRLKAVADRLIITRIQAEPLVPGL
CCCEEEEEECCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHEEEEECCCCCCCCH
KHGIVNVETFRPTDKDRPGAGPGGSAPFGSGPPSPDGHGFVDVGVRDSSRMTGFPDGRIP
HHCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
DGFGSRRPGGPSDRPPPDRSPFGRGGPDRDFPAPDRGGPPPQDGPPPGPPPPGPGPGPR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TPSAISRRQFLLAGIALQVLGPKIAAAQPTGTSDHGIGGSGLSIQGGGENEDHGIGGTG
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
IVGTIQGFGSIIVNNIHIPFSATTPIEIDGRRVRASAMKVGHVARVLLTGKLAARITIAS
CEEEHHHCCEEEEEEEEECCCCCCCEEECCCEEEHHHHHHHHHHHHHHHCCEEEEEEEHH
EVQGRIDRINKTGMTVLGQTIDTTGVATKGLRKGKRVAVFGIRKPDGTIIARRIEPRSVS
HHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHCCCEEEEEEEECCCCCEEEEECCCCCCC
EGAHVRGIPVKSSNRVLIGGLSLGSTHGYLAGKQTLVRLKAVADRLIITRIQAEPLVPGL
CCCEEEEEECCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHEEEEECCCCCCCCH
KHGIVNVETFRPTDKDRPGAGPGGSAPFGSGPPSPDGHGFVDVGVRDSSRMTGFPDGRIP
HHCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
DGFGSRRPGGPSDRPPPDRSPFGRGGPDRDFPAPDRGGPPPQDGPPPGPPPPGPGPGPR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA