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The map label for this gene is yjiR [C]

Identifier: 116248722

GI number: 116248722

Start: 45709

End: 47094

Strand: Direct

Name: yjiR [C]

Synonym: pRL120046

Alternate gene names: 116248722

Gene position: 45709-47094 (Clockwise)

Preceding gene: 116248716

Following gene: 116248723

Centisome position: 5.25

GC content: 64.65

Gene sequence:

>1386_bases
ATGACAAAGTGGCGCCCCGATCCCTCGCAACTCCGCCGGCCGGCCTATCTCTCACTTGCCGAGCAGATCGCAAACGCGAT
CACGGATGGCAAGCTCATCGACGGCACCCAATTGCCGCCGCACCGCAAGATGGCGGATGATCTGCATCTCTCGGTGCAGA
CGGTCAGCCGCGCCTATGACGAGTTGATCCGCCGGGGGCTGATATCAGGCGAGATCGGACGCGGCAGCTTCGTCCAGACC
AGACCGCGTGAGCCGGAGCCGCCCTATCTGCCGGAACGGCTGGGCGAGGTGATCGATCTGTCGATCCTGAAACCGGTCTG
CGAGCAGATCCATTTGGAAAGGCTGCGGCAGGCCTTCGGCTGGCTTTCGGAAAACCTGCCTTCCAGCTCGGCGCTTTCAT
TCAGGCCGAATATGGTGTTTCCGCGCCACCGCGCGGTCGCCACGGAATGGCTGGCGCGCTGCGGGTTGGAGGTGTCGCCG
CTGAACATCAGCGTGACGAATGGTGCGACATCGGGCATGACGGTGGCGCTGATGAGCGTCGCCCCGCCCGGCTCGACGGT
TGCGACCGAAGCGATCAGCCATCATACGCTCGTTCCGCTCTCCACCTATCTCGGCCTGCACCTCGAAGGACTGGCGATCG
ACGAGGAGGGCATGATCCCCGAAGCGCTGGACGAGGCCTGCCGAAAGGGACCGATCCGGGCCATTTTCCTGCAGCCCTCG
GTGATCAACCCGATGGCGGCGCTGATGAGCGCGGAGCGCAGGCAGGCGCTTGCCGCTGTGGCGGCCAAGCATGATATCGC
GATCATCGAAAACGACATTCTCGGCCCGATGGTCGAGGGTCGTGCGCCGCCGATGGCCGCGTTTGCACCGGAGCGGACAC
TTTACGTCACGAGTTTCACGAAAATTACCGTTCCGGGCCTGCGGATCGGTTACCTCACCGCACCCGACCGCTATGTCGCC
GCCGTCGCCAACCGGCATCTCGTCTCCAACTGGATGGCGACGCCTGCCATGGCCGAGATCGCCACCCGCTGGGTCAGCGA
CGGCACGGCGATGGAACTCGTCAACTGGCAGCGCCGTGCCCTTTTGAGCCGGCACGCGATCGCGGCGGAGATGCTGGCCG
GCCTCAGCTACCGGGCGCATCCGCAAAGCCTGCACGTCTGGCTGCCGCTCTCCGGCAATCATACGGAGGACGGTTTCGTA
TCGCAGGCAAGGCTGCGCGGTGTGGCGATCGCGCCTGGCAAATCGTTCCACACCGCCGATCAGGGCTGGACGCCGGCCGT
GCGCATCTCGCTTGGTTCGACGACGGAAAGCGAGTTGCGCACCGGGCTCGGCATTGTCGCCTCATTGGCGCAGGGAAATC
CTGAAGAGCTGCTGCTTGCGATCTGA

Upstream 100 bases:

>100_bases
GTGCTTTCTTTAGAAAGAATTCATTTCAAACGCAGGGAAAAGACAATGGGAGCGCATTTTGGCATTGTCAATTGAACTGA
TTTTCAGCAGTGTTGAAATC

Downstream 100 bases:

>100_bases
TGCAGATGCCTTGCGTTTGAGCATGTGCAGAATAATTGTCATGATATTATTTTACGAATTGACATGATTTTGATGGGCCG
TCATCGTTAGGACATTGCTT

Product: MocR-type GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 461; Mature: 460

Protein sequence:

>461_residues
MTKWRPDPSQLRRPAYLSLAEQIANAITDGKLIDGTQLPPHRKMADDLHLSVQTVSRAYDELIRRGLISGEIGRGSFVQT
RPREPEPPYLPERLGEVIDLSILKPVCEQIHLERLRQAFGWLSENLPSSSALSFRPNMVFPRHRAVATEWLARCGLEVSP
LNISVTNGATSGMTVALMSVAPPGSTVATEAISHHTLVPLSTYLGLHLEGLAIDEEGMIPEALDEACRKGPIRAIFLQPS
VINPMAALMSAERRQALAAVAAKHDIAIIENDILGPMVEGRAPPMAAFAPERTLYVTSFTKITVPGLRIGYLTAPDRYVA
AVANRHLVSNWMATPAMAEIATRWVSDGTAMELVNWQRRALLSRHAIAAEMLAGLSYRAHPQSLHVWLPLSGNHTEDGFV
SQARLRGVAIAPGKSFHTADQGWTPAVRISLGSTTESELRTGLGIVASLAQGNPEELLLAI

Sequences:

>Translated_461_residues
MTKWRPDPSQLRRPAYLSLAEQIANAITDGKLIDGTQLPPHRKMADDLHLSVQTVSRAYDELIRRGLISGEIGRGSFVQT
RPREPEPPYLPERLGEVIDLSILKPVCEQIHLERLRQAFGWLSENLPSSSALSFRPNMVFPRHRAVATEWLARCGLEVSP
LNISVTNGATSGMTVALMSVAPPGSTVATEAISHHTLVPLSTYLGLHLEGLAIDEEGMIPEALDEACRKGPIRAIFLQPS
VINPMAALMSAERRQALAAVAAKHDIAIIENDILGPMVEGRAPPMAAFAPERTLYVTSFTKITVPGLRIGYLTAPDRYVA
AVANRHLVSNWMATPAMAEIATRWVSDGTAMELVNWQRRALLSRHAIAAEMLAGLSYRAHPQSLHVWLPLSGNHTEDGFV
SQARLRGVAIAPGKSFHTADQGWTPAVRISLGSTTESELRTGLGIVASLAQGNPEELLLAI
>Mature_460_residues
TKWRPDPSQLRRPAYLSLAEQIANAITDGKLIDGTQLPPHRKMADDLHLSVQTVSRAYDELIRRGLISGEIGRGSFVQTR
PREPEPPYLPERLGEVIDLSILKPVCEQIHLERLRQAFGWLSENLPSSSALSFRPNMVFPRHRAVATEWLARCGLEVSPL
NISVTNGATSGMTVALMSVAPPGSTVATEAISHHTLVPLSTYLGLHLEGLAIDEEGMIPEALDEACRKGPIRAIFLQPSV
INPMAALMSAERRQALAAVAAKHDIAIIENDILGPMVEGRAPPMAAFAPERTLYVTSFTKITVPGLRIGYLTAPDRYVAA
VANRHLVSNWMATPAMAEIATRWVSDGTAMELVNWQRRALLSRHAIAAEMLAGLSYRAHPQSLHVWLPLSGNHTEDGFVS
QARLRGVAIAPGKSFHTADQGWTPAVRISLGSTTESELRTGLGIVASLAQGNPEELLLAI

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=317, Percent_Identity=22.397476340694, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI33469970, Length=317, Percent_Identity=22.397476340694, Blast_Score=86, Evalue=5e-17,
Organism=Escherichia coli, GI1790797, Length=358, Percent_Identity=26.8156424581006, Blast_Score=112, Evalue=6e-26,
Organism=Escherichia coli, GI1787710, Length=445, Percent_Identity=25.1685393258427, Blast_Score=109, Evalue=3e-25,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 50142; Mature: 50011

Theoretical pI: Translated: 7.23; Mature: 7.23

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKWRPDPSQLRRPAYLSLAEQIANAITDGKLIDGTQLPPHRKMADDLHLSVQTVSRAYD
CCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHH
ELIRRGLISGEIGRGSFVQTRPREPEPPYLPERLGEVIDLSILKPVCEQIHLERLRQAFG
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WLSENLPSSSALSFRPNMVFPRHRAVATEWLARCGLEVSPLNISVTNGATSGMTVALMSV
HHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCEECCEEEEECCCCCCCCEEEEEEE
APPGSTVATEAISHHTLVPLSTYLGLHLEGLAIDEEGMIPEALDEACRKGPIRAIFLQPS
CCCCCHHHHHHHHCCCCHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCC
VINPMAALMSAERRQALAAVAAKHDIAIIENDILGPMVEGRAPPMAAFAPERTLYVTSFT
HHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHCCCCCCCEEECCCCEEEEEEEE
KITVPGLRIGYLTAPDRYVAAVANRHLVSNWMATPAMAEIATRWVSDGTAMELVNWQRRA
EEEECCEEEEEEECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHH
LLSRHAIAAEMLAGLSYRAHPQSLHVWLPLSGNHTEDGFVSQARLRGVAIAPGKSFHTAD
HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHCEEEECCCCCCCCCC
QGWTPAVRISLGSTTESELRTGLGIVASLAQGNPEELLLAI
CCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCHHHEEEEC
>Mature Secondary Structure 
TKWRPDPSQLRRPAYLSLAEQIANAITDGKLIDGTQLPPHRKMADDLHLSVQTVSRAYD
CCCCCCHHHHCCCHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHH
ELIRRGLISGEIGRGSFVQTRPREPEPPYLPERLGEVIDLSILKPVCEQIHLERLRQAFG
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WLSENLPSSSALSFRPNMVFPRHRAVATEWLARCGLEVSPLNISVTNGATSGMTVALMSV
HHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCEECCEEEEECCCCCCCCEEEEEEE
APPGSTVATEAISHHTLVPLSTYLGLHLEGLAIDEEGMIPEALDEACRKGPIRAIFLQPS
CCCCCHHHHHHHHCCCCHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCC
VINPMAALMSAERRQALAAVAAKHDIAIIENDILGPMVEGRAPPMAAFAPERTLYVTSFT
HHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHCCCCCCCEEECCCCEEEEEEEE
KITVPGLRIGYLTAPDRYVAAVANRHLVSNWMATPAMAEIATRWVSDGTAMELVNWQRRA
EEEECCEEEEEEECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHH
LLSRHAIAAEMLAGLSYRAHPQSLHVWLPLSGNHTEDGFVSQARLRGVAIAPGKSFHTAD
HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHCEEEECCCCCCCCCC
QGWTPAVRISLGSTTESELRTGLGIVASLAQGNPEELLLAI
CCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCHHHEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1400197 [H]