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The map label for this gene is yhdW [H]

Identifier: 116248691

GI number: 116248691

Start: 14528

End: 15277

Strand: Direct

Name: yhdW [H]

Synonym: pRL120015

Alternate gene names: 116248691

Gene position: 14528-15277 (Clockwise)

Preceding gene: 116248690

Following gene: 116248692

Centisome position: 1.67

GC content: 58.27

Gene sequence:

>750_bases
ATGACGACCGTAGAGCCGCGATCCGGCCCAAGACGCAATGAGGTTCAGGCGCATCGAGGCGCCTCTGCCATTGCGCCCGA
GAATACCATTGCCGCTTTCCGGGCGGCCGCCGAACTAGGCGCGGAATGGGTCGAACTCGATGTTGCACTTCTTGGTGACG
GTACCCCGGTCGTCATCCACGACGTCTCCATCGATCGCTGTTCGTCGTCGAAGGGAAATCTTGCCGACCTCACCGCGTCG
GATCTCGACGCCATCGACGCAGGCTCATGGTTCAGCCCGAAATTCAAAGGCGAACCACTGCCGACGCTGGCCCGCGTTGT
TTCGGCGCTGGGCGAACTCGGCCTCAGCGCCAATGTCGAGATCAAGCAGCATGCCCATCACAAGTCACTCGACCAGCTGG
TCAAAGTCGTTGATCAACATCTGAAGGCGCGGGCGGCGCACACCAAGATCATGATCTCAAGCTTTGATGCCGCTGCGCTG
AAGGGAATGTACGAGATCGATCAAAGCTACGAACTCGCCATGCTGTGGAGCAAGTTGCCTGCGGATTGGCTGGATGTCCT
TCGGTCGATTCCCGCAAAGACCATCCATCTTGACTACAAGGCTCTGAGTATCGGGTTTCTCGAAGAGGCTGTTCGTCGTG
GCATCAAGGTACGGGCTTGGACTTGCAACGATCCCAGGCGGCTCGCATCGTTCTGGGATGTGGGTTTGACCGGTGTGATA
ACAGACGACCCCAGTGTCTACCTCACGTAA

Upstream 100 bases:

>100_bases
GCGATGCACCCTTTCAACAGCGATACCGGAAAACGCACAGATTGACTCCGGTTTATTATTTCTCCATCCCACCCCGGAAG
ACGACGAAAGAGATGAGACG

Downstream 100 bases:

>100_bases
GGAGCGGCGATGGGGCAGCGGATCATATCGAGCCGGCAACGTGAGATCCTCGCGCTGATCGAGACGGAAGGTGTTCAGTA
CATCGAGGAACTGGCACGTC

Product: putative glycerophosphoryl diester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MTTVEPRSGPRRNEVQAHRGASAIAPENTIAAFRAAAELGAEWVELDVALLGDGTPVVIHDVSIDRCSSSKGNLADLTAS
DLDAIDAGSWFSPKFKGEPLPTLARVVSALGELGLSANVEIKQHAHHKSLDQLVKVVDQHLKARAAHTKIMISSFDAAAL
KGMYEIDQSYELAMLWSKLPADWLDVLRSIPAKTIHLDYKALSIGFLEEAVRRGIKVRAWTCNDPRRLASFWDVGLTGVI
TDDPSVYLT

Sequences:

>Translated_249_residues
MTTVEPRSGPRRNEVQAHRGASAIAPENTIAAFRAAAELGAEWVELDVALLGDGTPVVIHDVSIDRCSSSKGNLADLTAS
DLDAIDAGSWFSPKFKGEPLPTLARVVSALGELGLSANVEIKQHAHHKSLDQLVKVVDQHLKARAAHTKIMISSFDAAAL
KGMYEIDQSYELAMLWSKLPADWLDVLRSIPAKTIHLDYKALSIGFLEEAVRRGIKVRAWTCNDPRRLASFWDVGLTGVI
TDDPSVYLT
>Mature_248_residues
TTVEPRSGPRRNEVQAHRGASAIAPENTIAAFRAAAELGAEWVELDVALLGDGTPVVIHDVSIDRCSSSKGNLADLTASD
LDAIDAGSWFSPKFKGEPLPTLARVVSALGELGLSANVEIKQHAHHKSLDQLVKVVDQHLKARAAHTKIMISSFDAAALK
GMYEIDQSYELAMLWSKLPADWLDVLRSIPAKTIHLDYKALSIGFLEEAVRRGIKVRAWTCNDPRRLASFWDVGLTGVIT
DDPSVYLT

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Homo sapiens, GI7706617, Length=256, Percent_Identity=27.734375, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI284055245, Length=108, Percent_Identity=34.2592592592593, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI284055240, Length=108, Percent_Identity=34.2592592592593, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI21361649, Length=108, Percent_Identity=34.2592592592593, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI284055242, Length=108, Percent_Identity=34.2592592592593, Blast_Score=69, Evalue=3e-12,
Organism=Escherichia coli, GI1789858, Length=229, Percent_Identity=32.3144104803493, Blast_Score=123, Evalue=1e-29,
Organism=Caenorhabditis elegans, GI17561436, Length=242, Percent_Identity=23.5537190082645, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17542344, Length=273, Percent_Identity=23.4432234432234, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 27105; Mature: 26974

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTVEPRSGPRRNEVQAHRGASAIAPENTIAAFRAAAELGAEWVELDVALLGDGTPVVIH
CCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHEEEEEEEECCCCEEEEE
DVSIDRCSSSKGNLADLTASDLDAIDAGSWFSPKFKGEPLPTLARVVSALGELGLSANVE
ECCHHCCCCCCCCEEECCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
IKQHAHHKSLDQLVKVVDQHLKARAAHTKIMISSFDAAALKGMYEIDQSYELAMLWSKLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHCCCHHHHHHHHHCC
ADWLDVLRSIPAKTIHLDYKALSIGFLEEAVRRGIKVRAWTCNDPRRLASFWDVGLTGVI
HHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCEEEE
TDDPSVYLT
ECCCCEEEC
>Mature Secondary Structure 
TTVEPRSGPRRNEVQAHRGASAIAPENTIAAFRAAAELGAEWVELDVALLGDGTPVVIH
CCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHEEEEEEEECCCCEEEEE
DVSIDRCSSSKGNLADLTASDLDAIDAGSWFSPKFKGEPLPTLARVVSALGELGLSANVE
ECCHHCCCCCCCCEEECCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
IKQHAHHKSLDQLVKVVDQHLKARAAHTKIMISSFDAAALKGMYEIDQSYELAMLWSKLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHCCCHHHHHHHHHCC
ADWLDVLRSIPAKTIHLDYKALSIGFLEEAVRRGIKVRAWTCNDPRRLASFWDVGLTGVI
HHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCEEEE
TDDPSVYLT
ECCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]