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The map label for this gene is cmpR [H]

Identifier: 115353250

GI number: 115353250

Start: 3537846

End: 3538763

Strand: Direct

Name: cmpR [H]

Synonym: Bamb_3199

Alternate gene names: 115353250

Gene position: 3537846-3538763 (Clockwise)

Preceding gene: 115353247

Following gene: 115353252

Centisome position: 99.47

GC content: 69.5

Gene sequence:

>918_bases
GTGTTCGATCAGCTGAAGGCGTTCCACGCGACCGTCCGGCAGGGCAGCATCACGCGTGCCGCGCGCCATCTGGGCGTGAG
CCAGCCGACGATCGCCGCGCAGATCCGGCAGGTCGAGCAGTGGTACGGCGTCGAGCTGTTCTACCGCAGCGGCCGCAAGC
TCGAGGTCACCGAGACCGGGATCGAGCTGCTGCCGCTCGTCGAAAAGATGATCGCGCTCGAGGCGCAGGCCGACATCATG
CTGCGCAACGTCGGCGGCCTGTTCGAAGGCCATCTGCGGATCGGCGCCACGGGGCCGTACTACATCATGGATGCGGTCGG
CCGCTTCTCGCATGCGCATCCGTCGATCGCGCTCACGTGCCGGATCGGCAACTCCGAAGAGATCCTGCAGGCGCTGCAGG
AATTCCGCATCGACCTCGCGGTGTCGTCGCAGCGCAATGACGCGGACGGCCTCGAACGCAAGGTGATCTCCACCGATCCG
CTCGTGCTCGTCGTGCATCGCGACCATCCGCTCGCGCGCTTCGACGCGATCGACGCCGCGCAGCTCGCCGACGTGCGGCT
GCTGATCCGCGAGGAAGGATCGGTCACGCGCCGCTGCACGGAGACGATCCTCGCGGCGGCCGGCGTCGCGGCCACGTCGG
TCGCCGAGATCGGCAGCCGCGAAGCGATCCGCGAGGCGATCCTGCATGGCGTGGGCGGGAGCCTGTTTCCACGCGGCGAG
GCCGAGCGCCATCCGGACCTGCGCGTCGTCGCGCTGCGGGGCGTCGACACGACGATCGACGAATACGTGTACTACCTAAA
GGCGCGCCGCCAGAGCCCCGCGATCGATGCGTTCCTCGCGTGCATCCTGCGGGCGCAGCCGGCCACGCACGATGCGGCAA
GCGCGCCACGCGCAGCGCGGCCGGTGAACGCGCGCTGA

Upstream 100 bases:

>100_bases
CCCAGCTTTTTTTCGAAGCGGCGCACGACGCGCCTTTCATCCGGCCGACACATGCGTACGCTACGCTGACGCGCGATGAA
GACGGGGGAGAAGCCGAGTC

Downstream 100 bases:

>100_bases
GCCGCCGCGCATTCACCGGTTTCGCGTATTTCCCGCCGCACTTCCCTGCCCTTTCCGGCGCTTTTCCCGCACCTTCCCTC
GTTGTCGTCCTCGTGCCTTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MFDQLKAFHATVRQGSITRAARHLGVSQPTIAAQIRQVEQWYGVELFYRSGRKLEVTETGIELLPLVEKMIALEAQADIM
LRNVGGLFEGHLRIGATGPYYIMDAVGRFSHAHPSIALTCRIGNSEEILQALQEFRIDLAVSSQRNDADGLERKVISTDP
LVLVVHRDHPLARFDAIDAAQLADVRLLIREEGSVTRRCTETILAAAGVAATSVAEIGSREAIREAILHGVGGSLFPRGE
AERHPDLRVVALRGVDTTIDEYVYYLKARRQSPAIDAFLACILRAQPATHDAASAPRAARPVNAR

Sequences:

>Translated_305_residues
MFDQLKAFHATVRQGSITRAARHLGVSQPTIAAQIRQVEQWYGVELFYRSGRKLEVTETGIELLPLVEKMIALEAQADIM
LRNVGGLFEGHLRIGATGPYYIMDAVGRFSHAHPSIALTCRIGNSEEILQALQEFRIDLAVSSQRNDADGLERKVISTDP
LVLVVHRDHPLARFDAIDAAQLADVRLLIREEGSVTRRCTETILAAAGVAATSVAEIGSREAIREAILHGVGGSLFPRGE
AERHPDLRVVALRGVDTTIDEYVYYLKARRQSPAIDAFLACILRAQPATHDAASAPRAARPVNAR
>Mature_305_residues
MFDQLKAFHATVRQGSITRAARHLGVSQPTIAAQIRQVEQWYGVELFYRSGRKLEVTETGIELLPLVEKMIALEAQADIM
LRNVGGLFEGHLRIGATGPYYIMDAVGRFSHAHPSIALTCRIGNSEEILQALQEFRIDLAVSSQRNDADGLERKVISTDP
LVLVVHRDHPLARFDAIDAAQLADVRLLIREEGSVTRRCTETILAAAGVAATSVAEIGSREAIREAILHGVGGSLFPRGE
AERHPDLRVVALRGVDTTIDEYVYYLKARRQSPAIDAFLACILRAQPATHDAASAPRAARPVNAR

Specific function: Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=241, Percent_Identity=31.1203319502075, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI157672245, Length=252, Percent_Identity=30.1587301587302, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1790399, Length=222, Percent_Identity=25.6756756756757, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1788748, Length=242, Percent_Identity=23.1404958677686, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI145693105, Length=288, Percent_Identity=21.1805555555556, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1787879, Length=289, Percent_Identity=25.6055363321799, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87082132, Length=289, Percent_Identity=24.9134948096886, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787806, Length=246, Percent_Identity=24.390243902439, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788296, Length=251, Percent_Identity=25.4980079681275, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788626, Length=264, Percent_Identity=26.5151515151515, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI87081904, Length=214, Percent_Identity=25.2336448598131, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33442; Mature: 33442

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDQLKAFHATVRQGSITRAARHLGVSQPTIAAQIRQVEQWYGVELFYRSGRKLEVTETG
CCCHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCEEEEECCCCEEEEECCC
IELLPLVEKMIALEAQADIMLRNVGGLFEGHLRIGATGPYYIMDAVGRFSHAHPSIALTC
HHHHHHHHHHHHHHHHHHHHHHHHCCCEECCEEECCCCCHHHHHHHHHHCCCCCCEEEEE
RIGNSEEILQALQEFRIDLAVSSQRNDADGLERKVISTDPLVLVVHRDHPLARFDAIDAA
EECCHHHHHHHHHHHHEEEEECCCCCCCHHHHHHEECCCCEEEEEECCCCCHHHCCCCHH
QLADVRLLIREEGSVTRRCTETILAAAGVAATSVAEIGSREAIREAILHGVGGSLFPRGE
HHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCC
AERHPDLRVVALRGVDTTIDEYVYYLKARRQSPAIDAFLACILRAQPATHDAASAPRAAR
CCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
PVNAR
CCCCC
>Mature Secondary Structure
MFDQLKAFHATVRQGSITRAARHLGVSQPTIAAQIRQVEQWYGVELFYRSGRKLEVTETG
CCCHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCEEEEECCCCEEEEECCC
IELLPLVEKMIALEAQADIMLRNVGGLFEGHLRIGATGPYYIMDAVGRFSHAHPSIALTC
HHHHHHHHHHHHHHHHHHHHHHHHCCCEECCEEECCCCCHHHHHHHHHHCCCCCCEEEEE
RIGNSEEILQALQEFRIDLAVSSQRNDADGLERKVISTDPLVLVVHRDHPLARFDAIDAA
EECCHHHHHHHHHHHHEEEEECCCCCCCHHHHHHEECCCCEEEEEECCCCCHHHCCCCHH
QLADVRLLIREEGSVTRRCTETILAAAGVAATSVAEIGSREAIREAILHGVGGSLFPRGE
HHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCC
AERHPDLRVVALRGVDTTIDEYVYYLKARRQSPAIDAFLACILRAQPATHDAASAPRAAR
CCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
PVNAR
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA