Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115353098

Identifier: 115353098

GI number: 115353098

Start: 3364628

End: 3366202

Strand: Direct

Name: 115353098

Synonym: Bamb_3047

Alternate gene names: NA

Gene position: 3364628-3366202 (Clockwise)

Preceding gene: 115353097

Following gene: 115353099

Centisome position: 94.6

GC content: 66.54

Gene sequence:

>1575_bases
ATGAAGAAGAAACTGATCTGCCTGCTGGTGGCCGGCGCGTTGCCGGGCATCGCGCTGGCCGACTCGACCTCCGCCGAAAT
CAAGGCATTGCAGGCGCAGGTGGCCGCGTTGCAGAAGCAGATGAAGGCCATGCAGGCGCAGCTCGCCGGGAAGCCGGGCG
GCGCACCCGTCGCGCAGGCCGGCGCGACGGCCGCGGCGAGGCCGGTGATCGTGGCCGCCGATCCGGCCTCGCCGGACTAT
GGCCGTGCCCAGGCCGCGCTGACCAACGACGAAGTCAGCGAAATGAAGCAGCAGATCGCCAACCAGCAGCTGAAGGTCGA
CTCGCTGACGGACGCGGCCAGCACCGGGCCGCTCGCGGGGCTGTCGGTGACGGGCTACATCGACCCGACCTACATCTACA
ACCGCGCGGCCGGCACGTCGTCGTTCCTGTTCGCGAACCACGAGAACGCGTACAACTACTTCAACAGCACGTTCGGCGAC
CTGTACCTCGACATCAAGAAGACCTTCGGCGTCGGCCCGATGGCGCCGTCGGCCGAGATCACGCTGATGCCGAACCGCGG
CAACGGCATCACGCTGCTGCAGAACTCGCGCGGCTCGATCACCGACAACCTGCTGAACACCGCGGTCATCAACGTGCCGA
TCACCGCGTCGACCACGCTCGTCGCCGGCCTGATCCCGAGCTTCGGCGGCTATGAGGTGCAGCAGTCGAACCAGATGCTC
ACGCTCACGCACAACCTGCTGTACGACTTCTCCGATCCGGGCAGCTACGTCGGTGCGGGCGCGAACTACACGAAGGGCAA
CTGGGCGTGGAAGTTCTTCGTCGGCAACGAGCAGTACCGCACGTACGGCTCGGTCACGCAGACGGGCACCAATGCGCTCG
GCGACCCGATCACGACCAGCAACAAGGTGCCGACCTTCACCGCGCGCGCCGACTACACGTGGTCGAGCGCACTCGACATC
GGCGGGTCGATCAACATCGGCCGGCAGACGCTGGCGAGCGCGATCGATCCGGACGGCAACGTCCACTACGGCCCGGGCGG
CGCCGCGCCGAGCGCGTACGGCACGTTCTTCTTCGGCGAAGTCGACGCGACCTACACGCTGGCCGACATCCAGTACAACG
CCGAGCTCGACTACGGCCAGCAGCAGCACGCGGCGTACAACGGCGGGCTCGCGCAGTGGTACGGCCTGTCGCTGCTCGCG
CACCGCAAGTTCAACGCACCGGTGGTCGGCCGCATGGGCGTGACGCTGCGCTACGATGCGCTCGTGAACCGCAAGAACGG
CGGCGGCGGCGGCGGCATCGCGCTGAACGGCAACGGGATGGATCCGTCCAACGGCTTCGGTGTCGATGCGGACTGCCTCG
CGACGTCGAAGGCGAACGGCGGCCTGGGCTTCGACTGCAAGGGCGCAATCCGCCAGGACGTCGCGCTCGACCTGCTGTTC
TATCCGACCCAGCAGATCACCGTGAAGGTCGAATACCGGCACGACTGGGCGAACAACAAGGTGTTCCTGCGCAACGACGG
GTCGTACGGCAAGTCCAACGACCTGCTCGCGACGCAGTTCATCTATTCGTTCTGA

Upstream 100 bases:

>100_bases
GCCCCTCCTCCCCATCCATCGATAACAAGACCTGCGCGCCGCGCGTTTGCGGCGCGCACCGAAACGCAGATTGACAGGCA
CACGACAAGGAGAATCCGCA

Downstream 100 bases:

>100_bases
CGCTGGCCGCGCAGGGCGCCGTGCCGCACGTATGGCGTCCCGCGCCGTTTCACCCGGCCGGACCGCGGTGCGTCGCGCAC
CGGCGCCGGCCGTCTTCGAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 524; Mature: 524

Protein sequence:

>524_residues
MKKKLICLLVAGALPGIALADSTSAEIKALQAQVAALQKQMKAMQAQLAGKPGGAPVAQAGATAAARPVIVAADPASPDY
GRAQAALTNDEVSEMKQQIANQQLKVDSLTDAASTGPLAGLSVTGYIDPTYIYNRAAGTSSFLFANHENAYNYFNSTFGD
LYLDIKKTFGVGPMAPSAEITLMPNRGNGITLLQNSRGSITDNLLNTAVINVPITASTTLVAGLIPSFGGYEVQQSNQML
TLTHNLLYDFSDPGSYVGAGANYTKGNWAWKFFVGNEQYRTYGSVTQTGTNALGDPITTSNKVPTFTARADYTWSSALDI
GGSINIGRQTLASAIDPDGNVHYGPGGAAPSAYGTFFFGEVDATYTLADIQYNAELDYGQQQHAAYNGGLAQWYGLSLLA
HRKFNAPVVGRMGVTLRYDALVNRKNGGGGGGIALNGNGMDPSNGFGVDADCLATSKANGGLGFDCKGAIRQDVALDLLF
YPTQQITVKVEYRHDWANNKVFLRNDGSYGKSNDLLATQFIYSF

Sequences:

>Translated_524_residues
MKKKLICLLVAGALPGIALADSTSAEIKALQAQVAALQKQMKAMQAQLAGKPGGAPVAQAGATAAARPVIVAADPASPDY
GRAQAALTNDEVSEMKQQIANQQLKVDSLTDAASTGPLAGLSVTGYIDPTYIYNRAAGTSSFLFANHENAYNYFNSTFGD
LYLDIKKTFGVGPMAPSAEITLMPNRGNGITLLQNSRGSITDNLLNTAVINVPITASTTLVAGLIPSFGGYEVQQSNQML
TLTHNLLYDFSDPGSYVGAGANYTKGNWAWKFFVGNEQYRTYGSVTQTGTNALGDPITTSNKVPTFTARADYTWSSALDI
GGSINIGRQTLASAIDPDGNVHYGPGGAAPSAYGTFFFGEVDATYTLADIQYNAELDYGQQQHAAYNGGLAQWYGLSLLA
HRKFNAPVVGRMGVTLRYDALVNRKNGGGGGGIALNGNGMDPSNGFGVDADCLATSKANGGLGFDCKGAIRQDVALDLLF
YPTQQITVKVEYRHDWANNKVFLRNDGSYGKSNDLLATQFIYSF
>Mature_524_residues
MKKKLICLLVAGALPGIALADSTSAEIKALQAQVAALQKQMKAMQAQLAGKPGGAPVAQAGATAAARPVIVAADPASPDY
GRAQAALTNDEVSEMKQQIANQQLKVDSLTDAASTGPLAGLSVTGYIDPTYIYNRAAGTSSFLFANHENAYNYFNSTFGD
LYLDIKKTFGVGPMAPSAEITLMPNRGNGITLLQNSRGSITDNLLNTAVINVPITASTTLVAGLIPSFGGYEVQQSNQML
TLTHNLLYDFSDPGSYVGAGANYTKGNWAWKFFVGNEQYRTYGSVTQTGTNALGDPITTSNKVPTFTARADYTWSSALDI
GGSINIGRQTLASAIDPDGNVHYGPGGAAPSAYGTFFFGEVDATYTLADIQYNAELDYGQQQHAAYNGGLAQWYGLSLLA
HRKFNAPVVGRMGVTLRYDALVNRKNGGGGGGIALNGNGMDPSNGFGVDADCLATSKANGGLGFDCKGAIRQDVALDLLF
YPTQQITVKVEYRHDWANNKVFLRNDGSYGKSNDLLATQFIYSF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55425; Mature: 55425

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKLICLLVAGALPGIALADSTSAEIKALQAQVAALQKQMKAMQAQLAGKPGGAPVAQA
CCCEEEEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHC
GATAAARPVIVAADPASPDYGRAQAALTNDEVSEMKQQIANQQLKVDSLTDAASTGPLAG
CCCHHCCCEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHCCEEEECCCCCCCCCCCCCC
LSVTGYIDPTYIYNRAAGTSSFLFANHENAYNYFNSTFGDLYLDIKKTFGVGPMAPSAEI
EEEEEEECCHHEEECCCCCCEEEEECCCCHHHHHHCCCCEEEEEEEHHCCCCCCCCCCEE
TLMPNRGNGITLLQNSRGSITDNLLNTAVINVPITASTTLVAGLIPSFGGYEVQQSNQML
EEEECCCCCEEEEECCCCCHHHHHHCEEEEEEECCCHHHHHHHHCCCCCCEEEECCCCEE
TLTHNLLYDFSDPGSYVGAGANYTKGNWAWKFFVGNEQYRTYGSVTQTGTNALGDPITTS
EEEEEEEEECCCCCCEEECCCCCCCCCEEEEEEECCCCEEEECCEECCCCCCCCCCCCCC
NKVPTFTARADYTWSSALDIGGSINIGRQTLASAIDPDGNVHYGPGGAAPSAYGTFFFGE
CCCCEEEEECCCCCHHHHCCCCCCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCEEEEEC
VDATYTLADIQYNAELDYGQQQHAAYNGGLAQWYGLSLLAHRKFNAPVVGRMGVTLRYDA
CCCEEEEEEEEEECCCCCCCHHHHHHCCCHHHHHHHEEEEECCCCCCEEECCCCEEEEEE
LVNRKNGGGGGGIALNGNGMDPSNGFGVDADCLATSKANGGLGFDCKGAIRQDVALDLLF
EEECCCCCCCCEEEECCCCCCCCCCCCCCHHHEEECCCCCCCCCCCCCHHHHCEEEEEEE
YPTQQITVKVEYRHDWANNKVFLRNDGSYGKSNDLLATQFIYSF
ECCEEEEEEEEEEECCCCCEEEEECCCCCCCCCCCEEEHHHHCC
>Mature Secondary Structure
MKKKLICLLVAGALPGIALADSTSAEIKALQAQVAALQKQMKAMQAQLAGKPGGAPVAQA
CCCEEEEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHC
GATAAARPVIVAADPASPDYGRAQAALTNDEVSEMKQQIANQQLKVDSLTDAASTGPLAG
CCCHHCCCEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHCCEEEECCCCCCCCCCCCCC
LSVTGYIDPTYIYNRAAGTSSFLFANHENAYNYFNSTFGDLYLDIKKTFGVGPMAPSAEI
EEEEEEECCHHEEECCCCCCEEEEECCCCHHHHHHCCCCEEEEEEEHHCCCCCCCCCCEE
TLMPNRGNGITLLQNSRGSITDNLLNTAVINVPITASTTLVAGLIPSFGGYEVQQSNQML
EEEECCCCCEEEEECCCCCHHHHHHCEEEEEEECCCHHHHHHHHCCCCCCEEEECCCCEE
TLTHNLLYDFSDPGSYVGAGANYTKGNWAWKFFVGNEQYRTYGSVTQTGTNALGDPITTS
EEEEEEEEECCCCCCEEECCCCCCCCCEEEEEEECCCCEEEECCEECCCCCCCCCCCCCC
NKVPTFTARADYTWSSALDIGGSINIGRQTLASAIDPDGNVHYGPGGAAPSAYGTFFFGE
CCCCEEEEECCCCCHHHHCCCCCCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCEEEEEC
VDATYTLADIQYNAELDYGQQQHAAYNGGLAQWYGLSLLAHRKFNAPVVGRMGVTLRYDA
CCCEEEEEEEEEECCCCCCCHHHHHHCCCHHHHHHHEEEEECCCCCCEEECCCCEEEEEE
LVNRKNGGGGGGIALNGNGMDPSNGFGVDADCLATSKANGGLGFDCKGAIRQDVALDLLF
EEECCCCCCCCEEEECCCCCCCCCCCCCCHHHEEECCCCCCCCCCCCCHHHHCEEEEEEE
YPTQQITVKVEYRHDWANNKVFLRNDGSYGKSNDLLATQFIYSF
ECCEEEEEEEEEEECCCCCEEEEECCCCCCCCCCCEEEHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA