| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115353098
Identifier: 115353098
GI number: 115353098
Start: 3364628
End: 3366202
Strand: Direct
Name: 115353098
Synonym: Bamb_3047
Alternate gene names: NA
Gene position: 3364628-3366202 (Clockwise)
Preceding gene: 115353097
Following gene: 115353099
Centisome position: 94.6
GC content: 66.54
Gene sequence:
>1575_bases ATGAAGAAGAAACTGATCTGCCTGCTGGTGGCCGGCGCGTTGCCGGGCATCGCGCTGGCCGACTCGACCTCCGCCGAAAT CAAGGCATTGCAGGCGCAGGTGGCCGCGTTGCAGAAGCAGATGAAGGCCATGCAGGCGCAGCTCGCCGGGAAGCCGGGCG GCGCACCCGTCGCGCAGGCCGGCGCGACGGCCGCGGCGAGGCCGGTGATCGTGGCCGCCGATCCGGCCTCGCCGGACTAT GGCCGTGCCCAGGCCGCGCTGACCAACGACGAAGTCAGCGAAATGAAGCAGCAGATCGCCAACCAGCAGCTGAAGGTCGA CTCGCTGACGGACGCGGCCAGCACCGGGCCGCTCGCGGGGCTGTCGGTGACGGGCTACATCGACCCGACCTACATCTACA ACCGCGCGGCCGGCACGTCGTCGTTCCTGTTCGCGAACCACGAGAACGCGTACAACTACTTCAACAGCACGTTCGGCGAC CTGTACCTCGACATCAAGAAGACCTTCGGCGTCGGCCCGATGGCGCCGTCGGCCGAGATCACGCTGATGCCGAACCGCGG CAACGGCATCACGCTGCTGCAGAACTCGCGCGGCTCGATCACCGACAACCTGCTGAACACCGCGGTCATCAACGTGCCGA TCACCGCGTCGACCACGCTCGTCGCCGGCCTGATCCCGAGCTTCGGCGGCTATGAGGTGCAGCAGTCGAACCAGATGCTC ACGCTCACGCACAACCTGCTGTACGACTTCTCCGATCCGGGCAGCTACGTCGGTGCGGGCGCGAACTACACGAAGGGCAA CTGGGCGTGGAAGTTCTTCGTCGGCAACGAGCAGTACCGCACGTACGGCTCGGTCACGCAGACGGGCACCAATGCGCTCG GCGACCCGATCACGACCAGCAACAAGGTGCCGACCTTCACCGCGCGCGCCGACTACACGTGGTCGAGCGCACTCGACATC GGCGGGTCGATCAACATCGGCCGGCAGACGCTGGCGAGCGCGATCGATCCGGACGGCAACGTCCACTACGGCCCGGGCGG CGCCGCGCCGAGCGCGTACGGCACGTTCTTCTTCGGCGAAGTCGACGCGACCTACACGCTGGCCGACATCCAGTACAACG CCGAGCTCGACTACGGCCAGCAGCAGCACGCGGCGTACAACGGCGGGCTCGCGCAGTGGTACGGCCTGTCGCTGCTCGCG CACCGCAAGTTCAACGCACCGGTGGTCGGCCGCATGGGCGTGACGCTGCGCTACGATGCGCTCGTGAACCGCAAGAACGG CGGCGGCGGCGGCGGCATCGCGCTGAACGGCAACGGGATGGATCCGTCCAACGGCTTCGGTGTCGATGCGGACTGCCTCG CGACGTCGAAGGCGAACGGCGGCCTGGGCTTCGACTGCAAGGGCGCAATCCGCCAGGACGTCGCGCTCGACCTGCTGTTC TATCCGACCCAGCAGATCACCGTGAAGGTCGAATACCGGCACGACTGGGCGAACAACAAGGTGTTCCTGCGCAACGACGG GTCGTACGGCAAGTCCAACGACCTGCTCGCGACGCAGTTCATCTATTCGTTCTGA
Upstream 100 bases:
>100_bases GCCCCTCCTCCCCATCCATCGATAACAAGACCTGCGCGCCGCGCGTTTGCGGCGCGCACCGAAACGCAGATTGACAGGCA CACGACAAGGAGAATCCGCA
Downstream 100 bases:
>100_bases CGCTGGCCGCGCAGGGCGCCGTGCCGCACGTATGGCGTCCCGCGCCGTTTCACCCGGCCGGACCGCGGTGCGTCGCGCAC CGGCGCCGGCCGTCTTCGAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 524; Mature: 524
Protein sequence:
>524_residues MKKKLICLLVAGALPGIALADSTSAEIKALQAQVAALQKQMKAMQAQLAGKPGGAPVAQAGATAAARPVIVAADPASPDY GRAQAALTNDEVSEMKQQIANQQLKVDSLTDAASTGPLAGLSVTGYIDPTYIYNRAAGTSSFLFANHENAYNYFNSTFGD LYLDIKKTFGVGPMAPSAEITLMPNRGNGITLLQNSRGSITDNLLNTAVINVPITASTTLVAGLIPSFGGYEVQQSNQML TLTHNLLYDFSDPGSYVGAGANYTKGNWAWKFFVGNEQYRTYGSVTQTGTNALGDPITTSNKVPTFTARADYTWSSALDI GGSINIGRQTLASAIDPDGNVHYGPGGAAPSAYGTFFFGEVDATYTLADIQYNAELDYGQQQHAAYNGGLAQWYGLSLLA HRKFNAPVVGRMGVTLRYDALVNRKNGGGGGGIALNGNGMDPSNGFGVDADCLATSKANGGLGFDCKGAIRQDVALDLLF YPTQQITVKVEYRHDWANNKVFLRNDGSYGKSNDLLATQFIYSF
Sequences:
>Translated_524_residues MKKKLICLLVAGALPGIALADSTSAEIKALQAQVAALQKQMKAMQAQLAGKPGGAPVAQAGATAAARPVIVAADPASPDY GRAQAALTNDEVSEMKQQIANQQLKVDSLTDAASTGPLAGLSVTGYIDPTYIYNRAAGTSSFLFANHENAYNYFNSTFGD LYLDIKKTFGVGPMAPSAEITLMPNRGNGITLLQNSRGSITDNLLNTAVINVPITASTTLVAGLIPSFGGYEVQQSNQML TLTHNLLYDFSDPGSYVGAGANYTKGNWAWKFFVGNEQYRTYGSVTQTGTNALGDPITTSNKVPTFTARADYTWSSALDI GGSINIGRQTLASAIDPDGNVHYGPGGAAPSAYGTFFFGEVDATYTLADIQYNAELDYGQQQHAAYNGGLAQWYGLSLLA HRKFNAPVVGRMGVTLRYDALVNRKNGGGGGGIALNGNGMDPSNGFGVDADCLATSKANGGLGFDCKGAIRQDVALDLLF YPTQQITVKVEYRHDWANNKVFLRNDGSYGKSNDLLATQFIYSF >Mature_524_residues MKKKLICLLVAGALPGIALADSTSAEIKALQAQVAALQKQMKAMQAQLAGKPGGAPVAQAGATAAARPVIVAADPASPDY GRAQAALTNDEVSEMKQQIANQQLKVDSLTDAASTGPLAGLSVTGYIDPTYIYNRAAGTSSFLFANHENAYNYFNSTFGD LYLDIKKTFGVGPMAPSAEITLMPNRGNGITLLQNSRGSITDNLLNTAVINVPITASTTLVAGLIPSFGGYEVQQSNQML TLTHNLLYDFSDPGSYVGAGANYTKGNWAWKFFVGNEQYRTYGSVTQTGTNALGDPITTSNKVPTFTARADYTWSSALDI GGSINIGRQTLASAIDPDGNVHYGPGGAAPSAYGTFFFGEVDATYTLADIQYNAELDYGQQQHAAYNGGLAQWYGLSLLA HRKFNAPVVGRMGVTLRYDALVNRKNGGGGGGIALNGNGMDPSNGFGVDADCLATSKANGGLGFDCKGAIRQDVALDLLF YPTQQITVKVEYRHDWANNKVFLRNDGSYGKSNDLLATQFIYSF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55425; Mature: 55425
Theoretical pI: Translated: 6.26; Mature: 6.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKKLICLLVAGALPGIALADSTSAEIKALQAQVAALQKQMKAMQAQLAGKPGGAPVAQA CCCEEEEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHC GATAAARPVIVAADPASPDYGRAQAALTNDEVSEMKQQIANQQLKVDSLTDAASTGPLAG CCCHHCCCEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHCCEEEECCCCCCCCCCCCCC LSVTGYIDPTYIYNRAAGTSSFLFANHENAYNYFNSTFGDLYLDIKKTFGVGPMAPSAEI EEEEEEECCHHEEECCCCCCEEEEECCCCHHHHHHCCCCEEEEEEEHHCCCCCCCCCCEE TLMPNRGNGITLLQNSRGSITDNLLNTAVINVPITASTTLVAGLIPSFGGYEVQQSNQML EEEECCCCCEEEEECCCCCHHHHHHCEEEEEEECCCHHHHHHHHCCCCCCEEEECCCCEE TLTHNLLYDFSDPGSYVGAGANYTKGNWAWKFFVGNEQYRTYGSVTQTGTNALGDPITTS EEEEEEEEECCCCCCEEECCCCCCCCCEEEEEEECCCCEEEECCEECCCCCCCCCCCCCC NKVPTFTARADYTWSSALDIGGSINIGRQTLASAIDPDGNVHYGPGGAAPSAYGTFFFGE CCCCEEEEECCCCCHHHHCCCCCCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCEEEEEC VDATYTLADIQYNAELDYGQQQHAAYNGGLAQWYGLSLLAHRKFNAPVVGRMGVTLRYDA CCCEEEEEEEEEECCCCCCCHHHHHHCCCHHHHHHHEEEEECCCCCCEEECCCCEEEEEE LVNRKNGGGGGGIALNGNGMDPSNGFGVDADCLATSKANGGLGFDCKGAIRQDVALDLLF EEECCCCCCCCEEEECCCCCCCCCCCCCCHHHEEECCCCCCCCCCCCCHHHHCEEEEEEE YPTQQITVKVEYRHDWANNKVFLRNDGSYGKSNDLLATQFIYSF ECCEEEEEEEEEEECCCCCEEEEECCCCCCCCCCCEEEHHHHCC >Mature Secondary Structure MKKKLICLLVAGALPGIALADSTSAEIKALQAQVAALQKQMKAMQAQLAGKPGGAPVAQA CCCEEEEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHC GATAAARPVIVAADPASPDYGRAQAALTNDEVSEMKQQIANQQLKVDSLTDAASTGPLAG CCCHHCCCEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHCCEEEECCCCCCCCCCCCCC LSVTGYIDPTYIYNRAAGTSSFLFANHENAYNYFNSTFGDLYLDIKKTFGVGPMAPSAEI EEEEEEECCHHEEECCCCCCEEEEECCCCHHHHHHCCCCEEEEEEEHHCCCCCCCCCCEE TLMPNRGNGITLLQNSRGSITDNLLNTAVINVPITASTTLVAGLIPSFGGYEVQQSNQML EEEECCCCCEEEEECCCCCHHHHHHCEEEEEEECCCHHHHHHHHCCCCCCEEEECCCCEE TLTHNLLYDFSDPGSYVGAGANYTKGNWAWKFFVGNEQYRTYGSVTQTGTNALGDPITTS EEEEEEEEECCCCCCEEECCCCCCCCCEEEEEEECCCCEEEECCEECCCCCCCCCCCCCC NKVPTFTARADYTWSSALDIGGSINIGRQTLASAIDPDGNVHYGPGGAAPSAYGTFFFGE CCCCEEEEECCCCCHHHHCCCCCCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCEEEEEC VDATYTLADIQYNAELDYGQQQHAAYNGGLAQWYGLSLLAHRKFNAPVVGRMGVTLRYDA CCCEEEEEEEEEECCCCCCCHHHHHHCCCHHHHHHHEEEEECCCCCCEEECCCCEEEEEE LVNRKNGGGGGGIALNGNGMDPSNGFGVDADCLATSKANGGLGFDCKGAIRQDVALDLLF EEECCCCCCCCEEEECCCCCCCCCCCCCCHHHEEECCCCCCCCCCCCCHHHHCEEEEEEE YPTQQITVKVEYRHDWANNKVFLRNDGSYGKSNDLLATQFIYSF ECCEEEEEEEEEEECCCCCEEEEECCCCCCCCCCCEEEHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA