| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
Click here to switch to the map view.
The map label for this gene is 115353087
Identifier: 115353087
GI number: 115353087
Start: 3353226
End: 3353426
Strand: Direct
Name: 115353087
Synonym: Bamb_3036
Alternate gene names: NA
Gene position: 3353226-3353426 (Clockwise)
Preceding gene: 115353084
Following gene: 115353090
Centisome position: 94.28
GC content: 68.66
Gene sequence:
>201_bases ATGGAATTCGAAGTCCAGGACATGACCTGCGGCGGCTGCGCCAATGCGATCACGCGCGCCGTGACGGCGGCGGACCCGGC CGCGAAGCTCGACATCGACGTGGCCGCGAAGCTCGTGAAGGTCGAATCGGCGCAAGGCGCCGAGCGTGTGCAGTCGATCA TCGAGGCGGCGGGCTTCCACCCGGCACTGCGCTCGGCCTGA
Upstream 100 bases:
>100_bases TAGCTTTTGCGTGACCGCACGTCATGAACGCGCTTGACCTTCCCACCATGGCAAGCTTCATGCTGGGCGTATTCGTCAAT CGTCAACTCAGGAGAACACG
Downstream 100 bases:
>100_bases CGCGGGTGCATCACACGCGGGCGCAGTGCCGCTCGGCATCGCGCCCGCATACCGGCCGCGTCAGCGCAGCCGGATCAGCG TCGACTTCAGTTCGGTGTAC
Product: heavy metal transport/detoxification protein
Products: NA
Alternate protein names: Heavy-Metal-Associated Domain Protein
Number of amino acids: Translated: 66; Mature: 66
Protein sequence:
>66_residues MEFEVQDMTCGGCANAITRAVTAADPAAKLDIDVAAKLVKVESAQGAERVQSIIEAAGFHPALRSA
Sequences:
>Translated_66_residues MEFEVQDMTCGGCANAITRAVTAADPAAKLDIDVAAKLVKVESAQGAERVQSIIEAAGFHPALRSA >Mature_66_residues MEFEVQDMTCGGCANAITRAVTAADPAAKLDIDVAAKLVKVESAQGAERVQSIIEAAGFHPALRSA
Specific function: Unknown
COG id: COG2608
COG function: function code P; Copper chaperone
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 6816; Mature: 6816
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: PS01047 HMA_1 ; PS50846 HMA_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEFEVQDMTCGGCANAITRAVTAADPAAKLDIDVAAKLVKVESAQGAERVQSIIEAAGFH CCCCCCCCCCCHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCC PALRSA CCCCCC >Mature Secondary Structure MEFEVQDMTCGGCANAITRAVTAADPAAKLDIDVAAKLVKVESAQGAERVQSIIEAAGFH CCCCCCCCCCCHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCC PALRSA CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA