| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115353081
Identifier: 115353081
GI number: 115353081
Start: 3350175
End: 3350540
Strand: Direct
Name: 115353081
Synonym: Bamb_3030
Alternate gene names: NA
Gene position: 3350175-3350540 (Clockwise)
Preceding gene: 115353080
Following gene: 115353082
Centisome position: 94.2
GC content: 62.02
Gene sequence:
>366_bases ATGTCTGCTTCCGTACGACGCGTGTTCAAGACGAAGTGGTTTCACAAGGCAGCAGGAAAAGCGGGAATCGCCGATCGCGA CCTGTGCCGAGCGGTTCGGGAGCTGGCGCGGGGCCAGGGCATCGACCTCGGCGGCAACGTCTGGAAGAAGCGCCTGGACG ACAATCGCCAGCGAGGCATCGTGCTGGGCAAGGTCGGGCATACGTGGGTGTTCGTGTTCCTGTTCGCGAAACGTGATCGC GACAACATCGATGCACGCGAGCTGCGCGCCTTCCGGAAGCTCGCCGCGGATGTCGGTCGACACACCGACGTCGACATCGC GACACTGGTCGCACTGAACGAGTGGGTGGAGATTTGCAATGGCTAA
Upstream 100 bases:
>100_bases CATATCGGTAGGAAGCAGCGCACGAAGCAGGCCATTCGGCCAGGTCGAAATATGTACCACGTAGTGGTATATAATCCTGT GCTAACTCGACTGGCTCGAC
Downstream 100 bases:
>100_bases GAGTCGATTCAAGAGCGACGCGACGGAGGCGGTCCACAGCGCCGCGTCGGGCCTTTATCGCGCGCAATTGATCGACAAGA AGACGATGCGCGAATACGAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 121; Mature: 120
Protein sequence:
>121_residues MSASVRRVFKTKWFHKAAGKAGIADRDLCRAVRELARGQGIDLGGNVWKKRLDDNRQRGIVLGKVGHTWVFVFLFAKRDR DNIDARELRAFRKLAADVGRHTDVDIATLVALNEWVEICNG
Sequences:
>Translated_121_residues MSASVRRVFKTKWFHKAAGKAGIADRDLCRAVRELARGQGIDLGGNVWKKRLDDNRQRGIVLGKVGHTWVFVFLFAKRDR DNIDARELRAFRKLAADVGRHTDVDIATLVALNEWVEICNG >Mature_120_residues SASVRRVFKTKWFHKAAGKAGIADRDLCRAVRELARGQGIDLGGNVWKKRLDDNRQRGIVLGKVGHTWVFVFLFAKRDRD NIDARELRAFRKLAADVGRHTDVDIATLVALNEWVEICNG
Specific function: Unknown
COG id: COG4737
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13702; Mature: 13571
Theoretical pI: Translated: 11.01; Mature: 11.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSASVRRVFKTKWFHKAAGKAGIADRDLCRAVRELARGQGIDLGGNVWKKRLDDNRQRGI CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCE VLGKVGHTWVFVFLFAKRDRDNIDARELRAFRKLAADVGRHTDVDIATLVALNEWVEICN EEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC G C >Mature Secondary Structure SASVRRVFKTKWFHKAAGKAGIADRDLCRAVRELARGQGIDLGGNVWKKRLDDNRQRGI CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCE VLGKVGHTWVFVFLFAKRDRDNIDARELRAFRKLAADVGRHTDVDIATLVALNEWVEICN EEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC G C
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA