Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115353081

Identifier: 115353081

GI number: 115353081

Start: 3350175

End: 3350540

Strand: Direct

Name: 115353081

Synonym: Bamb_3030

Alternate gene names: NA

Gene position: 3350175-3350540 (Clockwise)

Preceding gene: 115353080

Following gene: 115353082

Centisome position: 94.2

GC content: 62.02

Gene sequence:

>366_bases
ATGTCTGCTTCCGTACGACGCGTGTTCAAGACGAAGTGGTTTCACAAGGCAGCAGGAAAAGCGGGAATCGCCGATCGCGA
CCTGTGCCGAGCGGTTCGGGAGCTGGCGCGGGGCCAGGGCATCGACCTCGGCGGCAACGTCTGGAAGAAGCGCCTGGACG
ACAATCGCCAGCGAGGCATCGTGCTGGGCAAGGTCGGGCATACGTGGGTGTTCGTGTTCCTGTTCGCGAAACGTGATCGC
GACAACATCGATGCACGCGAGCTGCGCGCCTTCCGGAAGCTCGCCGCGGATGTCGGTCGACACACCGACGTCGACATCGC
GACACTGGTCGCACTGAACGAGTGGGTGGAGATTTGCAATGGCTAA

Upstream 100 bases:

>100_bases
CATATCGGTAGGAAGCAGCGCACGAAGCAGGCCATTCGGCCAGGTCGAAATATGTACCACGTAGTGGTATATAATCCTGT
GCTAACTCGACTGGCTCGAC

Downstream 100 bases:

>100_bases
GAGTCGATTCAAGAGCGACGCGACGGAGGCGGTCCACAGCGCCGCGTCGGGCCTTTATCGCGCGCAATTGATCGACAAGA
AGACGATGCGCGAATACGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 121; Mature: 120

Protein sequence:

>121_residues
MSASVRRVFKTKWFHKAAGKAGIADRDLCRAVRELARGQGIDLGGNVWKKRLDDNRQRGIVLGKVGHTWVFVFLFAKRDR
DNIDARELRAFRKLAADVGRHTDVDIATLVALNEWVEICNG

Sequences:

>Translated_121_residues
MSASVRRVFKTKWFHKAAGKAGIADRDLCRAVRELARGQGIDLGGNVWKKRLDDNRQRGIVLGKVGHTWVFVFLFAKRDR
DNIDARELRAFRKLAADVGRHTDVDIATLVALNEWVEICNG
>Mature_120_residues
SASVRRVFKTKWFHKAAGKAGIADRDLCRAVRELARGQGIDLGGNVWKKRLDDNRQRGIVLGKVGHTWVFVFLFAKRDRD
NIDARELRAFRKLAADVGRHTDVDIATLVALNEWVEICNG

Specific function: Unknown

COG id: COG4737

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13702; Mature: 13571

Theoretical pI: Translated: 11.01; Mature: 11.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSASVRRVFKTKWFHKAAGKAGIADRDLCRAVRELARGQGIDLGGNVWKKRLDDNRQRGI
CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCE
VLGKVGHTWVFVFLFAKRDRDNIDARELRAFRKLAADVGRHTDVDIATLVALNEWVEICN
EEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
G
C
>Mature Secondary Structure 
SASVRRVFKTKWFHKAAGKAGIADRDLCRAVRELARGQGIDLGGNVWKKRLDDNRQRGI
CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCE
VLGKVGHTWVFVFLFAKRDRDNIDARELRAFRKLAADVGRHTDVDIATLVALNEWVEICN
EEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
G
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA