| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is bglA [H]
Identifier: 115353038
GI number: 115353038
Start: 3297781
End: 3299199
Strand: Direct
Name: bglA [H]
Synonym: Bamb_2987
Alternate gene names: 115353038
Gene position: 3297781-3299199 (Clockwise)
Preceding gene: 115353037
Following gene: 115353041
Centisome position: 92.72
GC content: 69.42
Gene sequence:
>1419_bases ATGATCAAACCCATCTCGCTTCAGAGCCGCCGACGATTTCTGGCGCAAGGCACCGCCATGCTCGGCAGCGGCATGCTGTC CGCCTGCGGCGGCGATTCGATCGACTCCGACGCCTCCGCCCGCTTCGCCGACGACTTCGTGTGGGGCGTCGCCACCGCCG CGCCGCAAATCGAAAGCCGCGACGGCCGCGGGCGCAGCAACTGGGACGTGTTCGCCGACCAGCCCGGCACGATCGCCGAC GGCTCGACGAATGCGCGCTGCATCGAATTCGAGAAACGCTACCCGGGCGACCTCTCGCTGCTCGCGAACGCGGGCGTCCA GGGATTCCGGTTCTCGACCGCGTGGCCGCGCGTGCAGCCGGACGGCCCCGGCGCGGCGAGCGAAGCGGGCCTCGCCACCT ACGATCGCATGGTCGACGCGATGCTCGAGCGGCACCTCACGCCCTACCTGACGCTGTTTCACTGGGACATTCCGGTGTGG GCCGGAGATTTTCGTGACCGCGACATTGCGTACCGGCTGGCCGACTACGCGCAGCAGGTGTCGCGCCGGCTCGGCGACCG GGTCAAGCACTGGATGATGCTGAACGAGCCCAACGGCGTCGCGCTGTCCGGCTACGCGTACGGCGCGTCGCCGCCGCGCG CGCAGTCCATGGGGGCGATGTTCGCCGCGATCCACCATCAGAACCTCGCGCAGGGGCTGATGTTCCAGGCCGTGCGTTCG AACGTGCGCGGCGCGGCGCAGGTCGGCACCACGATCAGCGGGCGGCCGGTGCATGCGGCCACGAATGCGGCCGCCGATCA GGCGGCCGCCGCGCAGTTCGACGCGATCTGGCATCGCGCGTTTCTCGACCCGCTGTACGGCAAGGGCTATCCGGCCGAGC TGCAGGCGGCGCTGGCGCCGCTCGTGCAGCCGGGCGACATGGCGACGATCGCGGCGAACCCGGATTTCCTCGGCGTGCAG TATTACAACTGCTTCTACGTGAAGGCCGGCGCCAACGGCACCGGCTTCGCGCTGGCCGCCAGCCCGGCGAACGAAACCCA GACGCTGGGATATCCGGTCGAGCCGTACGGGATGTCCGAGATGCTGCTGCGCGTCCATCGCGACTACGGCGCGCCGCGCA TCGTCGTCACCGAGACCGGGTTCGCGATCGCCGAGCCCGCGCCGAGCGGCGGCATCGTCGACGACGGCCCGCGTATCGAC TACCTCGCGAGCTACCTGAACGCCGCGCACAACGCGTATCGGCAGGGCGTGCGCCTCGGCGGGGTGTTCTACTGGGCCGG AATGGATAGCTGGGAGTGGTCCAGCGGCTTCGCGAAGAAATTCGGGCTGATCCACGTCGACCCGGCAACGCAGCAACGCG TGCCGAAACGCAGCCTCGCGTACTACTCGCGCTGCATCGCCGGCAATCGCGTCGCGTAG
Upstream 100 bases:
>100_bases GCATTGATCCGGCGCGCGCGCATTTCGCTGCGCCCCATGCCTCTTTAATCGCAATCCTAATCAAAACGCGGATGCCATTC GCCGCACAACGAGTAAGCCC
Downstream 100 bases:
>100_bases GCGGCGTAGGGCGCGCGGGCCGGCAGGCGGGCGGCCTGCGAACCCACGCGCCCGCCTGCCCGCGGCGCCCCGCCCGCCGT CGGGCGGGCGCGTCGTCCCC
Product: glycoside hydrolase family protein
Products: NA
Alternate protein names: Beta-D-glucoside glucohydrolase; Cellobiase; Gentiobiase [H]
Number of amino acids: Translated: 472; Mature: 472
Protein sequence:
>472_residues MIKPISLQSRRRFLAQGTAMLGSGMLSACGGDSIDSDASARFADDFVWGVATAAPQIESRDGRGRSNWDVFADQPGTIAD GSTNARCIEFEKRYPGDLSLLANAGVQGFRFSTAWPRVQPDGPGAASEAGLATYDRMVDAMLERHLTPYLTLFHWDIPVW AGDFRDRDIAYRLADYAQQVSRRLGDRVKHWMMLNEPNGVALSGYAYGASPPRAQSMGAMFAAIHHQNLAQGLMFQAVRS NVRGAAQVGTTISGRPVHAATNAAADQAAAAQFDAIWHRAFLDPLYGKGYPAELQAALAPLVQPGDMATIAANPDFLGVQ YYNCFYVKAGANGTGFALAASPANETQTLGYPVEPYGMSEMLLRVHRDYGAPRIVVTETGFAIAEPAPSGGIVDDGPRID YLASYLNAAHNAYRQGVRLGGVFYWAGMDSWEWSSGFAKKFGLIHVDPATQQRVPKRSLAYYSRCIAGNRVA
Sequences:
>Translated_472_residues MIKPISLQSRRRFLAQGTAMLGSGMLSACGGDSIDSDASARFADDFVWGVATAAPQIESRDGRGRSNWDVFADQPGTIAD GSTNARCIEFEKRYPGDLSLLANAGVQGFRFSTAWPRVQPDGPGAASEAGLATYDRMVDAMLERHLTPYLTLFHWDIPVW AGDFRDRDIAYRLADYAQQVSRRLGDRVKHWMMLNEPNGVALSGYAYGASPPRAQSMGAMFAAIHHQNLAQGLMFQAVRS NVRGAAQVGTTISGRPVHAATNAAADQAAAAQFDAIWHRAFLDPLYGKGYPAELQAALAPLVQPGDMATIAANPDFLGVQ YYNCFYVKAGANGTGFALAASPANETQTLGYPVEPYGMSEMLLRVHRDYGAPRIVVTETGFAIAEPAPSGGIVDDGPRID YLASYLNAAHNAYRQGVRLGGVFYWAGMDSWEWSSGFAKKFGLIHVDPATQQRVPKRSLAYYSRCIAGNRVA >Mature_472_residues MIKPISLQSRRRFLAQGTAMLGSGMLSACGGDSIDSDASARFADDFVWGVATAAPQIESRDGRGRSNWDVFADQPGTIAD GSTNARCIEFEKRYPGDLSLLANAGVQGFRFSTAWPRVQPDGPGAASEAGLATYDRMVDAMLERHLTPYLTLFHWDIPVW AGDFRDRDIAYRLADYAQQVSRRLGDRVKHWMMLNEPNGVALSGYAYGASPPRAQSMGAMFAAIHHQNLAQGLMFQAVRS NVRGAAQVGTTISGRPVHAATNAAADQAAAAQFDAIWHRAFLDPLYGKGYPAELQAALAPLVQPGDMATIAANPDFLGVQ YYNCFYVKAGANGTGFALAASPANETQTLGYPVEPYGMSEMLLRVHRDYGAPRIVVTETGFAIAEPAPSGGIVDDGPRID YLASYLNAAHNAYRQGVRLGGVFYWAGMDSWEWSSGFAKKFGLIHVDPATQQRVPKRSLAYYSRCIAGNRVA
Specific function: Unknown
COG id: COG2723
COG function: function code G; Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 1 family [H]
Homologues:
Organism=Homo sapiens, GI32481206, Length=472, Percent_Identity=29.6610169491525, Blast_Score=185, Evalue=7e-47, Organism=Homo sapiens, GI13273313, Length=464, Percent_Identity=28.6637931034483, Blast_Score=169, Evalue=4e-42, Organism=Homo sapiens, GI110681710, Length=471, Percent_Identity=28.2377919320594, Blast_Score=168, Evalue=1e-41, Organism=Homo sapiens, GI28376633, Length=453, Percent_Identity=26.7108167770419, Blast_Score=147, Evalue=2e-35, Organism=Homo sapiens, GI24497614, Length=469, Percent_Identity=26.0127931769723, Blast_Score=122, Evalue=8e-28, Organism=Escherichia coli, GI2367174, Length=472, Percent_Identity=27.3305084745763, Blast_Score=154, Evalue=8e-39, Organism=Escherichia coli, GI2367270, Length=457, Percent_Identity=27.1334792122538, Blast_Score=150, Evalue=2e-37, Organism=Escherichia coli, GI1789070, Length=472, Percent_Identity=25.2118644067797, Blast_Score=120, Evalue=2e-28, Organism=Caenorhabditis elegans, GI17552856, Length=464, Percent_Identity=26.9396551724138, Blast_Score=156, Evalue=2e-38, Organism=Caenorhabditis elegans, GI17539390, Length=465, Percent_Identity=27.741935483871, Blast_Score=152, Evalue=3e-37, Organism=Drosophila melanogaster, GI21356577, Length=495, Percent_Identity=28.8888888888889, Blast_Score=187, Evalue=1e-47,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001360 - InterPro: IPR018120 - InterPro: IPR017736 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF00232 Glyco_hydro_1 [H]
EC number: =3.2.1.21 [H]
Molecular weight: Translated: 51067; Mature: 51067
Theoretical pI: Translated: 7.32; Mature: 7.32
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKPISLQSRRRFLAQGTAMLGSGMLSACGGDSIDSDASARFADDFVWGVATAAPQIESR CCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC DGRGRSNWDVFADQPGTIADGSTNARCIEFEKRYPGDLSLLANAGVQGFRFSTAWPRVQP CCCCCCCCCEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHCCCCCEEECCCCCCCCC DGPGAASEAGLATYDRMVDAMLERHLTPYLTLFHWDIPVWAGDFRDRDIAYRLADYAQQV CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCEEECCCCCCHHHHHHHHHHHHH SRRLGDRVKHWMMLNEPNGVALSGYAYGASPPRAQSMGAMFAAIHHQNLAQGLMFQAVRS HHHHHHHHHHEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH NVRGAAQVGTTISGRPVHAATNAAADQAAAAQFDAIWHRAFLDPLYGKGYPAELQAALAP CCCCHHHHCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH LVQPGDMATIAANPDFLGVQYYNCFYVKAGANGTGFALAASPANETQTLGYPVEPYGMSE CCCCCCEEEEECCCCEEEEEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCHHH MLLRVHRDYGAPRIVVTETGFAIAEPAPSGGIVDDGPRIDYLASYLNAAHNAYRQGVRLG HHHHHHHHCCCCEEEEEECCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEC GVFYWAGMDSWEWSSGFAKKFGLIHVDPATQQRVPKRSLAYYSRCIAGNRVA EEEEECCCCCCCCCCCHHHHCCEEEECCCHHHHCCHHHHHHHHHHHCCCCCC >Mature Secondary Structure MIKPISLQSRRRFLAQGTAMLGSGMLSACGGDSIDSDASARFADDFVWGVATAAPQIESR CCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC DGRGRSNWDVFADQPGTIADGSTNARCIEFEKRYPGDLSLLANAGVQGFRFSTAWPRVQP CCCCCCCCCEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHCCCCCEEECCCCCCCCC DGPGAASEAGLATYDRMVDAMLERHLTPYLTLFHWDIPVWAGDFRDRDIAYRLADYAQQV CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCEEECCCCCCHHHHHHHHHHHHH SRRLGDRVKHWMMLNEPNGVALSGYAYGASPPRAQSMGAMFAAIHHQNLAQGLMFQAVRS HHHHHHHHHHEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH NVRGAAQVGTTISGRPVHAATNAAADQAAAAQFDAIWHRAFLDPLYGKGYPAELQAALAP CCCCHHHHCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH LVQPGDMATIAANPDFLGVQYYNCFYVKAGANGTGFALAASPANETQTLGYPVEPYGMSE CCCCCCEEEEECCCCEEEEEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCHHH MLLRVHRDYGAPRIVVTETGFAIAEPAPSGGIVDDGPRIDYLASYLNAAHNAYRQGVRLG HHHHHHHHCCCCEEEEEECCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEC GVFYWAGMDSWEWSSGFAKKFGLIHVDPATQQRVPKRSLAYYSRCIAGNRVA EEEEECCCCCCCCCCCHHHHCCEEEECCCHHHHCCHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8277941 [H]