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The map label for this gene is ltrA [H]

Identifier: 115352986

GI number: 115352986

Start: 3237986

End: 3238948

Strand: Direct

Name: ltrA [H]

Synonym: Bamb_2935

Alternate gene names: 115352986

Gene position: 3237986-3238948 (Clockwise)

Preceding gene: 115352976

Following gene: 115352987

Centisome position: 91.04

GC content: 68.64

Gene sequence:

>963_bases
ATGGACCTGAACGCGCTGACGCTGCTCGTCGAGATCCTCGACGCGGGCAATCTGAGCAAGGCCGCGCAGCGGCTCAAGGT
GAGCCGCGCGAACGTCAGCTACCGGCTGAACCAGCTCGAACGCTCGATCGGCCAGCAGCTCGTGCGCCGCACGACGCGCC
GCATCGAGCCGACCGAGATCGGGCTGAAGCTGTACGAGCACGGCCGGCGCATCCGCAACGAACTGCTGGCCGCGCAGGAG
TCGGTGACGACGCTCGGCCAGGACCTGCAGGGCCGCGTGCGGCTGTCGGTGCCGAGCGGCTACGGGCAGATGGTGATGTC
CGACTGGCTGCTGGCGTTCAAGCGGCTGCATCCGGGCATCGTGCTCGACGTGGTGTTCGAGAATCGCGTGGAAGACCTGA
TGCGCGACGAGATCGACATCGCGGTGCGCGTGATGCCGGAGCCGCCGCAGAACCTCGTCGCGCGCGACATGGGGGCGGTG
CGCTACGTTGCGTGCGCGTCGGCCGCGTTCGCGGCCGCGCACGGGATGCCGGCGAGCCTCGGCGCGCTGGCCGCCGCGCC
GGTCGTCACCGCGACCGTGATGGGGCGGCAGTTGCGGATCGCCGCGTATCTCGGCGACGAGCGCCACGAGGTGCTGCTCG
AGCCGACGCTGATTTCGGAGAACTTCCTGTTCCTGCGCCAGGCGATCCTCGCCGGGATCGGCGTCGGCATCGTGCCCGAC
TACGTGGTGCAGGAAGACATGCGGCGCGGCATGGTCGTCACGTCGCTCGACGCGTACCGGCTCAGCATCTTCGGCACGCA
CATGTACATGCTGTACATGCCCAACCGGCACCACACGCGTGCGACCGCAACGTTCATAGAGTTCATCCTCGAACAGGCCG
GAAAGACCGGCCGGGGCGGGCCGGGCGCGATGCGTCAGGGTTTCCTGTCGGATGACAATCCGCCGCCCGCACGGCGACAA
TAG

Upstream 100 bases:

>100_bases
ATTCATTGACAATTCCCGCATGCCTTTACAAGCTGTCAAGTCTGACTTGACATTGAATGCTTTCGAACCGTTAAACGGGA
CGGATCAGGAGACACCGGAC

Downstream 100 bases:

>100_bases
CGCGCCGCCCGTGCGGAGCGCGTGCCGCGCACACGCCGCCGCCTTCGAATTCACCGTTGCCGAGGGTTCAATGTTCGATC
GGATTCGTCCGCATTCGCGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MDLNALTLLVEILDAGNLSKAAQRLKVSRANVSYRLNQLERSIGQQLVRRTTRRIEPTEIGLKLYEHGRRIRNELLAAQE
SVTTLGQDLQGRVRLSVPSGYGQMVMSDWLLAFKRLHPGIVLDVVFENRVEDLMRDEIDIAVRVMPEPPQNLVARDMGAV
RYVACASAAFAAAHGMPASLGALAAAPVVTATVMGRQLRIAAYLGDERHEVLLEPTLISENFLFLRQAILAGIGVGIVPD
YVVQEDMRRGMVVTSLDAYRLSIFGTHMYMLYMPNRHHTRATATFIEFILEQAGKTGRGGPGAMRQGFLSDDNPPPARRQ

Sequences:

>Translated_320_residues
MDLNALTLLVEILDAGNLSKAAQRLKVSRANVSYRLNQLERSIGQQLVRRTTRRIEPTEIGLKLYEHGRRIRNELLAAQE
SVTTLGQDLQGRVRLSVPSGYGQMVMSDWLLAFKRLHPGIVLDVVFENRVEDLMRDEIDIAVRVMPEPPQNLVARDMGAV
RYVACASAAFAAAHGMPASLGALAAAPVVTATVMGRQLRIAAYLGDERHEVLLEPTLISENFLFLRQAILAGIGVGIVPD
YVVQEDMRRGMVVTSLDAYRLSIFGTHMYMLYMPNRHHTRATATFIEFILEQAGKTGRGGPGAMRQGFLSDDNPPPARRQ
>Mature_320_residues
MDLNALTLLVEILDAGNLSKAAQRLKVSRANVSYRLNQLERSIGQQLVRRTTRRIEPTEIGLKLYEHGRRIRNELLAAQE
SVTTLGQDLQGRVRLSVPSGYGQMVMSDWLLAFKRLHPGIVLDVVFENRVEDLMRDEIDIAVRVMPEPPQNLVARDMGAV
RYVACASAAFAAAHGMPASLGALAAAPVVTATVMGRQLRIAAYLGDERHEVLLEPTLISENFLFLRQAILAGIGVGIVPD
YVVQEDMRRGMVVTSLDAYRLSIFGTHMYMLYMPNRHHTRATATFIEFILEQAGKTGRGGPGAMRQGFLSDDNPPPARRQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=292, Percent_Identity=26.3698630136986, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI87081978, Length=285, Percent_Identity=27.3684210526316, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1789639, Length=259, Percent_Identity=23.1660231660232, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789440, Length=287, Percent_Identity=23.6933797909408, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1786401, Length=297, Percent_Identity=24.5791245791246, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1786508, Length=255, Percent_Identity=26.2745098039216, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788297, Length=147, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787589, Length=285, Percent_Identity=21.4035087719298, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35473; Mature: 35473

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLNALTLLVEILDAGNLSKAAQRLKVSRANVSYRLNQLERSIGQQLVRRTTRRIEPTEI
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
GLKLYEHGRRIRNELLAAQESVTTLGQDLQGRVRLSVPSGYGQMVMSDWLLAFKRLHPGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCE
VLDVVFENRVEDLMRDEIDIAVRVMPEPPQNLVARDMGAVRYVACASAAFAAAHGMPASL
EEEHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
GALAAAPVVTATVMGRQLRIAAYLGDERHEVLLEPTLISENFLFLRQAILAGIGVGIVPD
HHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCH
YVVQEDMRRGMVVTSLDAYRLSIFGTHMYMLYMPNRHHTRATATFIEFILEQAGKTGRGG
HHHHHHHHCCEEEEECCHHHEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCC
PGAMRQGFLSDDNPPPARRQ
CHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDLNALTLLVEILDAGNLSKAAQRLKVSRANVSYRLNQLERSIGQQLVRRTTRRIEPTEI
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
GLKLYEHGRRIRNELLAAQESVTTLGQDLQGRVRLSVPSGYGQMVMSDWLLAFKRLHPGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCE
VLDVVFENRVEDLMRDEIDIAVRVMPEPPQNLVARDMGAVRYVACASAAFAAAHGMPASL
EEEHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
GALAAAPVVTATVMGRQLRIAAYLGDERHEVLLEPTLISENFLFLRQAILAGIGVGIVPD
HHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCH
YVVQEDMRRGMVVTSLDAYRLSIFGTHMYMLYMPNRHHTRATATFIEFILEQAGKTGRGG
HHHHHHHHCCEEEEECCHHHEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCC
PGAMRQGFLSDDNPPPARRQ
CHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]