Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115352943

Identifier: 115352943

GI number: 115352943

Start: 3192942

End: 3193232

Strand: Direct

Name: 115352943

Synonym: Bamb_2892

Alternate gene names: NA

Gene position: 3192942-3193232 (Clockwise)

Preceding gene: 115352940

Following gene: 115352956

Centisome position: 89.78

GC content: 63.92

Gene sequence:

>291_bases
ATGTACGTCATCGACATCCATTACCACGCGTCGCTCGAACACATCGACGATGCGCTCGAACGCCACCGTGCGTATCTGCA
GCCGCTGTTCGAGCGCGGCATCTTCATCGCGGCGGGGCCGAAGGTGCCGCGCAAAGGCGGCGTGATCCTCGCGGCCCGCA
TCGATCGCGACGAACTGGACGCGATCCTCGACACCGATCCGTTCGTGACCGAAGGGCTCGCGACGTATCGGGTGACCGAA
TTCAAGATCACGCGTGCCGCGCAGGGTTTCAACGTGCCGGCGCTGCCGTAA

Upstream 100 bases:

>100_bases
GCGGCCGACGCACGACGGCCGGCACGACATGGAGCAGCCGCTGTGCTAAAAAGACCGGCTGGCCGGCGCGACACGCACCG
GCGACATTCCGGGGCCATCC

Downstream 100 bases:

>100_bases
CGCGCGCGAGCGCCGCTGCACGTGCGCAAGCACGCCGCCGCGGCAGTGCGACGCGGCGAATGCAGATCGAGGGAAAGAAG
GAAGCATGCGTGACGGCGCG

Product: YCII-related

Products: NA

Alternate protein names: YCII-Related Protein; YCII-Related Domain Superfamily Protein; YCII-Like Protein; YCII-Related Domain-Containing Protein; Ycii-Related Protein; YCII-Related Domain Superfamily; YciI Domain-Containing Protein; GTP Cyclohydrolase II; YciL Domain-Containing Protein; YCII-Related Domain Family Protein

Number of amino acids: Translated: 96; Mature: 96

Protein sequence:

>96_residues
MYVIDIHYHASLEHIDDALERHRAYLQPLFERGIFIAAGPKVPRKGGVILAARIDRDELDAILDTDPFVTEGLATYRVTE
FKITRAAQGFNVPALP

Sequences:

>Translated_96_residues
MYVIDIHYHASLEHIDDALERHRAYLQPLFERGIFIAAGPKVPRKGGVILAARIDRDELDAILDTDPFVTEGLATYRVTE
FKITRAAQGFNVPALP
>Mature_96_residues
MYVIDIHYHASLEHIDDALERHRAYLQPLFERGIFIAAGPKVPRKGGVILAARIDRDELDAILDTDPFVTEGLATYRVTE
FKITRAAQGFNVPALP

Specific function: Unknown

COG id: COG2350

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10789; Mature: 10789

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYVIDIHYHASLEHIDDALERHRAYLQPLFERGIFIAAGPKVPRKGGVILAARIDRDELD
CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCEEEEEECCHHHHH
AILDTDPFVTEGLATYRVTEFKITRAAQGFNVPALP
HHCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MYVIDIHYHASLEHIDDALERHRAYLQPLFERGIFIAAGPKVPRKGGVILAARIDRDELD
CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCEEEEEECCHHHHH
AILDTDPFVTEGLATYRVTEFKITRAAQGFNVPALP
HHCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA