Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115352891

Identifier: 115352891

GI number: 115352891

Start: 3135125

End: 3136207

Strand: Direct

Name: 115352891

Synonym: Bamb_2840

Alternate gene names: NA

Gene position: 3135125-3136207 (Clockwise)

Preceding gene: 115352890

Following gene: 115352897

Centisome position: 88.15

GC content: 64.64

Gene sequence:

>1083_bases
ATGGAGAAGCAACAAGAGTCGCGCGACGCGCAGAGCCGCGAGCCCCACCTGCGCAGCGTGCGGCTGACGAGCGACTTCAG
TCTGCCGAAGCTGTCGGCGATCGAGATCGGCAGCTATCTGTTCGCCCTCGTCGCGATGGTGCTCGTCATCGAACTCAAGC
TGCTGGGCGGGCTGCTGGCCGGCCTGCTGGTCTATCAGCTGATCCACACGATCGCCCCGGTGATCGAACGCCACACGACA
AGCATGCGCGCGCGCTGGGTCTCCGTCGTGCTGCTGTCGATCGCGATCGTCGGCGGGCTCACGGGCCTGACGATCGGCAT
CATCGATCACTTCGAGCACACGGTGCCGAACCTGCAGAGCCTGCTCGGCCAGCTGATGCAGATCGTCGAGCAGACGCGCG
CGCGCACGCCGGCCTGGATCGCGAACCTGCTGCCCGTCGACGTCGAACAGATGAAAGCCAAGGCGGCTCTGCTGATGCAC
TCGCACATGGATCAGCTCCAGCAAGGCGGCAAGAGCGTCGCGCGCGGCTTCGGCCATGTGCTGTTCGGGATGATCATCGG
CGCGATGATCGCGATCGGCGTCGAGCACGGCAAGGTGCGCCGGCCGCTGTCCACCGCGCTCGTCACGCGCGTGTCGCGCT
TCGCCGAATCGTTCCGCCGGATCGTGTTCGCGCAGATCAAGATCTCGGCGATCAACGCGGCCTTCACCGGCATCTACCTG
CTCGTCGCGCTGCCGATCTTCCACCAGCGGCTGCCGCTGTCCAAAACGCTCGTGCTCGTCACGTTCATCGTCGGGCTGCT
GCCGGTGATCGGCAACCTGATCTCTAACACGCTGATCGTCGCGGTGTCGCTGTCGGTCAGCATGGGCACCGCGATCGCAT
CGCTCGCGTTCCTCGTCGTGATCCACAAGCTCGAATATTTCCTGAACGCGAAGATCATCGGCGGCCAGATCGAGTCGCGC
GCATGGGAGCTGCTGCTCGCGATGCTGATCATGGAAGCCGCGTTCGGGCTGCCGGGCGTGATTGCCGCGCCGATCTTCTA
TGCGTACCTGAAGCGCGAGCTGTACATGCTGCGGCTGATCTGA

Upstream 100 bases:

>100_bases
GTCGTAAGGTTCGCTATCCGCACCAATCCGGTGCGACGCCGGGCGAGCACCGTCCTGCCGCCCACCGCGCGGCGCGACAC
ACGAACGACAGGAATCCACG

Downstream 100 bases:

>100_bases
CGCGCCGCGCGTCACGCGATAAACAAAAACGCCGCGCCCCATCCAGGGCGCGGCGTTGTTACGTGCGGGGCCGGCTGATG
GCCGATGGCCGACGCGCACC

Product: putative transporter

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 360; Mature: 360

Protein sequence:

>360_residues
MEKQQESRDAQSREPHLRSVRLTSDFSLPKLSAIEIGSYLFALVAMVLVIELKLLGGLLAGLLVYQLIHTIAPVIERHTT
SMRARWVSVVLLSIAIVGGLTGLTIGIIDHFEHTVPNLQSLLGQLMQIVEQTRARTPAWIANLLPVDVEQMKAKAALLMH
SHMDQLQQGGKSVARGFGHVLFGMIIGAMIAIGVEHGKVRRPLSTALVTRVSRFAESFRRIVFAQIKISAINAAFTGIYL
LVALPIFHQRLPLSKTLVLVTFIVGLLPVIGNLISNTLIVAVSLSVSMGTAIASLAFLVVIHKLEYFLNAKIIGGQIESR
AWELLLAMLIMEAAFGLPGVIAAPIFYAYLKRELYMLRLI

Sequences:

>Translated_360_residues
MEKQQESRDAQSREPHLRSVRLTSDFSLPKLSAIEIGSYLFALVAMVLVIELKLLGGLLAGLLVYQLIHTIAPVIERHTT
SMRARWVSVVLLSIAIVGGLTGLTIGIIDHFEHTVPNLQSLLGQLMQIVEQTRARTPAWIANLLPVDVEQMKAKAALLMH
SHMDQLQQGGKSVARGFGHVLFGMIIGAMIAIGVEHGKVRRPLSTALVTRVSRFAESFRRIVFAQIKISAINAAFTGIYL
LVALPIFHQRLPLSKTLVLVTFIVGLLPVIGNLISNTLIVAVSLSVSMGTAIASLAFLVVIHKLEYFLNAKIIGGQIESR
AWELLLAMLIMEAAFGLPGVIAAPIFYAYLKRELYMLRLI
>Mature_360_residues
MEKQQESRDAQSREPHLRSVRLTSDFSLPKLSAIEIGSYLFALVAMVLVIELKLLGGLLAGLLVYQLIHTIAPVIERHTT
SMRARWVSVVLLSIAIVGGLTGLTIGIIDHFEHTVPNLQSLLGQLMQIVEQTRARTPAWIANLLPVDVEQMKAKAALLMH
SHMDQLQQGGKSVARGFGHVLFGMIIGAMIAIGVEHGKVRRPLSTALVTRVSRFAESFRRIVFAQIKISAINAAFTGIYL
LVALPIFHQRLPLSKTLVLVTFIVGLLPVIGNLISNTLIVAVSLSVSMGTAIASLAFLVVIHKLEYFLNAKIIGGQIESR
AWELLLAMLIMEAAFGLPGVIAAPIFYAYLKRELYMLRLI

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39492; Mature: 39492

Theoretical pI: Translated: 10.58; Mature: 10.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKQQESRDAQSREPHLRSVRLTSDFSLPKLSAIEIGSYLFALVAMVLVIELKLLGGLLA
CCCCHHHCCHHCCCCCHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLLVYQLIHTIAPVIERHTTSMRARWVSVVLLSIAIVGGLTGLTIGIIDHFEHTVPNLQS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
LLGQLMQIVEQTRARTPAWIANLLPVDVEQMKAKAALLMHSHMDQLQQGGKSVARGFGHV
HHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFGMIIGAMIAIGVEHGKVRRPLSTALVTRVSRFAESFRRIVFAQIKISAINAAFTGIYL
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVALPIFHQRLPLSKTLVLVTFIVGLLPVIGNLISNTLIVAVSLSVSMGTAIASLAFLVV
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IHKLEYFLNAKIIGGQIESRAWELLLAMLIMEAAFGLPGVIAAPIFYAYLKRELYMLRLI
HHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA