| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is gmhB [H]
Identifier: 115352806
GI number: 115352806
Start: 3036215
End: 3036778
Strand: Direct
Name: gmhB [H]
Synonym: Bamb_2755
Alternate gene names: 115352806
Gene position: 3036215-3036778 (Clockwise)
Preceding gene: 115352805
Following gene: 115352807
Centisome position: 85.37
GC content: 67.38
Gene sequence:
>564_bases ATGCCGATCAGCCCCAACCGTAAGCTCGTCGTCCTCGACCGGGACGGCGTGATCAACGTCGATTCGGACGCGTTCATCAA GACGCCCGACGAATGGATCGCGCTGCCCGGCAGCCTCGAGGCGATCGCACGGCTCAACCACGCAGGCTATCGCGTGGTCG TCGCGACCAACCAGTCCGGCATCGGCCGCGGGCTGTTCGACATGGCCGCGCTCAACGAGATGCACCAGAAGATGCATCGC GCGGCGGCCGCGGTCGGCGCGCGCATCGACGCGGTGTTCTTCTGCCCGCACGTGGCGGAAGATCGTTGCGAGTGCCGCAA GCCGAAACCCGGCATGATGCAGATGATCGCCGAGCGCTTCGAGATCGATCCCGGTCACACGCCGGCCGTCGGCGATTCGC TGCGCGACCTGCAGGCCGCCGTCGCGGTCGGCTTCCGGCCGCACCTCGTGCTGACCGGCAAGGGCAAGAAGACGCTCGCC GCGGGCAATCTGCCGGACGGCACGAAGGTCCACGACGACCTGCGCGCGTTCGCGCTCGACTTCCTTTCACACGAACACGA GTGA
Upstream 100 bases:
>100_bases CCCGCGCTGCGCGCCAACCGTCTCGCGCTGCTGTTCGCGCTGCATCAGCAGATGAACTGTGTCGCCGACATCTCGAAGCT CGCCGCATAAAGGCCGCACG
Downstream 100 bases:
>100_bases TGCGGCCGCCGCGCGCATCCTCCTTACCACCAGACCCACGCCGATGCGCTTCGTCCGCTCCCTGCTGCTGCTGATCTACT TCATCCTGTACACGGTGCCG
Product: D,D-heptose 1,7-bisphosphate phosphatase
Products: NA
Alternate protein names: D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [H]
Number of amino acids: Translated: 187; Mature: 186
Protein sequence:
>187_residues MPISPNRKLVVLDRDGVINVDSDAFIKTPDEWIALPGSLEAIARLNHAGYRVVVATNQSGIGRGLFDMAALNEMHQKMHR AAAAVGARIDAVFFCPHVAEDRCECRKPKPGMMQMIAERFEIDPGHTPAVGDSLRDLQAAVAVGFRPHLVLTGKGKKTLA AGNLPDGTKVHDDLRAFALDFLSHEHE
Sequences:
>Translated_187_residues MPISPNRKLVVLDRDGVINVDSDAFIKTPDEWIALPGSLEAIARLNHAGYRVVVATNQSGIGRGLFDMAALNEMHQKMHR AAAAVGARIDAVFFCPHVAEDRCECRKPKPGMMQMIAERFEIDPGHTPAVGDSLRDLQAAVAVGFRPHLVLTGKGKKTLA AGNLPDGTKVHDDLRAFALDFLSHEHE >Mature_186_residues PISPNRKLVVLDRDGVINVDSDAFIKTPDEWIALPGSLEAIARLNHAGYRVVVATNQSGIGRGLFDMAALNEMHQKMHRA AAAVGARIDAVFFCPHVAEDRCECRKPKPGMMQMIAERFEIDPGHTPAVGDSLRDLQAAVAVGFRPHLVLTGKGKKTLAA GNLPDGTKVHDDLRAFALDFLSHEHE
Specific function: Converts the D-glycero-beta-D-manno-heptose 1,7- bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1- phosphate by removing the phosphate group at the C-7 position [H]
COG id: COG0241
COG function: function code E; Histidinol phosphatase and related phosphatases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the gmhB family [H]
Homologues:
Organism=Escherichia coli, GI1786399, Length=154, Percent_Identity=40.2597402597403, Blast_Score=100, Evalue=8e-23, Organism=Escherichia coli, GI87082027, Length=141, Percent_Identity=31.2056737588652, Blast_Score=85, Evalue=3e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023214 - InterPro: IPR006549 - InterPro: IPR006543 - InterPro: IPR013954 [H]
Pfam domain/function: PF08645 PNK3P [H]
EC number: NA
Molecular weight: Translated: 20352; Mature: 20220
Theoretical pI: Translated: 7.02; Mature: 7.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPISPNRKLVVLDRDGVINVDSDAFIKTPDEWIALPGSLEAIARLNHAGYRVVVATNQSG CCCCCCCEEEEEECCCEEEECCCCEEECCHHHEECCCCHHHHHHHCCCCEEEEEEECCCC IGRGLFDMAALNEMHQKMHRAAAAVGARIDAVFFCPHVAEDRCECRKPKPGMMQMIAERF CCCHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEECCCCCCHHHHCCCCCCHHHHHHHHHH EIDPGHTPAVGDSLRDLQAAVAVGFRPHLVLTGKGKKTLAAGNLPDGTKVHDDLRAFALD CCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCEEECCCCCCCCCHHHHHHHHHHH FLSHEHE HHHCCCC >Mature Secondary Structure PISPNRKLVVLDRDGVINVDSDAFIKTPDEWIALPGSLEAIARLNHAGYRVVVATNQSG CCCCCCEEEEEECCCEEEECCCCEEECCHHHEECCCCHHHHHHHCCCCEEEEEEECCCC IGRGLFDMAALNEMHQKMHRAAAAVGARIDAVFFCPHVAEDRCECRKPKPGMMQMIAERF CCCHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEECCCCCCHHHHCCCCCCHHHHHHHHHH EIDPGHTPAVGDSLRDLQAAVAVGFRPHLVLTGKGKKTLAAGNLPDGTKVHDDLRAFALD CCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCEEECCCCCCCCCHHHHHHHHHHH FLSHEHE HHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10761919; 12101286 [H]