| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is yieH [H]
Identifier: 115352792
GI number: 115352792
Start: 3018474
End: 3019196
Strand: Direct
Name: yieH [H]
Synonym: Bamb_2741
Alternate gene names: 115352792
Gene position: 3018474-3019196 (Clockwise)
Preceding gene: 115352791
Following gene: 115352796
Centisome position: 84.87
GC content: 67.08
Gene sequence:
>723_bases ATGATCGGCGTCGCCGACACCCGCCTTTTCACCACCATGCTCGATCACCTTATCTGCGACTGCGACGGCGTGCTCGTCGA CAGCGAAGTCATTGCCGACCGCGTGCTGTTCGAAACGCTGTCCGCCACCTTCCCCCACCTCGATTTCGAAGACGCCGCGA AGTCCGCGTTCGGCCAGCAGACGTCGCGCTTTCTCGCCGGGCTCGAAGCGCATTTCGGCATCCGGATGCCGGACGGCTTC ATCGAGACCATCGAGCGCAACATCGAGACCGGTCTCGCGCAATCGCTCGCACCGATCACCGGCGTGCGCGATGCGTTGCT GAAGGTCAGCCTGCCGGCCGCGGTGGTATCGAACAGCCGGCTCGTGCGCGTGCGCAGCTCGCTGAAACGCGCGTCCCTCA CCGAAATCTTCGGCGATCGCGTGTTCAGCTCCGAGCAGGTCGCGCGGCCAAAGCCCTACCCTGACGTGTACCTGCATGCG GCGAACACGCTCGGCGTCGCGCCGGCGCGCTGCATCGTCGTCGAGGACAGCGTGTCGGGCCTGAACGCCGCGCGCGCGGC GGGCATGAAGACGATCGCGTTCGTCGGCGCGAGCCACATCCCCGACAACTACGCGGACGCGCTGCGCGCGATGGGCATCA CGCGGATCATGCGCAGGATGGATGAACTGCCGGCGCTCGTCGCGGCCGGCCTGCGCGGCGAATTCGGCGACGTGCAGTCC TGA
Upstream 100 bases:
>100_bases GCGATACCGTGCCGCGTCCGGTACGCCGGATCGATCCGACCGCGCAAGCAGCTCGCCGAACGGTGCGCGGCACGGCCGCG AAAGCACGTATCATGGCGGC
Downstream 100 bases:
>100_bases CGAGCGGCCGCGCCGCAGCGACAGAAGCGGCGTGCGGCTCGATGCGCACGCCGTCCCGCGGGCGCATCGGCGCGCCCGCC GTACCGGCTGTCAGGCCGGC
Product: HAD family hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 240; Mature: 240
Protein sequence:
>240_residues MIGVADTRLFTTMLDHLICDCDGVLVDSEVIADRVLFETLSATFPHLDFEDAAKSAFGQQTSRFLAGLEAHFGIRMPDGF IETIERNIETGLAQSLAPITGVRDALLKVSLPAAVVSNSRLVRVRSSLKRASLTEIFGDRVFSSEQVARPKPYPDVYLHA ANTLGVAPARCIVVEDSVSGLNAARAAGMKTIAFVGASHIPDNYADALRAMGITRIMRRMDELPALVAAGLRGEFGDVQS
Sequences:
>Translated_240_residues MIGVADTRLFTTMLDHLICDCDGVLVDSEVIADRVLFETLSATFPHLDFEDAAKSAFGQQTSRFLAGLEAHFGIRMPDGF IETIERNIETGLAQSLAPITGVRDALLKVSLPAAVVSNSRLVRVRSSLKRASLTEIFGDRVFSSEQVARPKPYPDVYLHA ANTLGVAPARCIVVEDSVSGLNAARAAGMKTIAFVGASHIPDNYADALRAMGITRIMRRMDELPALVAAGLRGEFGDVQS >Mature_240_residues MIGVADTRLFTTMLDHLICDCDGVLVDSEVIADRVLFETLSATFPHLDFEDAAKSAFGQQTSRFLAGLEAHFGIRMPDGF IETIERNIETGLAQSLAPITGVRDALLKVSLPAAVVSNSRLVRVRSSLKRASLTEIFGDRVFSSEQVARPKPYPDVYLHA ANTLGVAPARCIVVEDSVSGLNAARAAGMKTIAFVGASHIPDNYADALRAMGITRIMRRMDELPALVAAGLRGEFGDVQS
Specific function: Catalyzes the dephosphorylation of the artificial chromogenic substrate p-nitrophenyl phosphate (pNPP) and of the natural substrates phosphoenolpyruvate and AMP [H]
COG id: COG0637
COG function: function code R; Predicted phosphatase/phosphohexomutase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family [H]
Homologues:
Organism=Escherichia coli, GI1790151, Length=184, Percent_Identity=31.5217391304348, Blast_Score=84, Evalue=9e-18, Organism=Escherichia coli, GI1788021, Length=181, Percent_Identity=30.3867403314917, Blast_Score=64, Evalue=8e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006439 - InterPro: IPR006402 - InterPro: IPR005833 [H]
Pfam domain/function: PF00702 Hydrolase [H]
EC number: NA
Molecular weight: Translated: 25834; Mature: 25834
Theoretical pI: Translated: 5.65; Mature: 5.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIGVADTRLFTTMLDHLICDCDGVLVDSEVIADRVLFETLSATFPHLDFEDAAKSAFGQQ CCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH TSRFLAGLEAHFGIRMPDGFIETIERNIETGLAQSLAPITGVRDALLKVSLPAAVVSNSR HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCH LVRVRSSLKRASLTEIFGDRVFSSEQVARPKPYPDVYLHAANTLGVAPARCIVVEDSVSG HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCC LNAARAAGMKTIAFVGASHIPDNYADALRAMGITRIMRRMDELPALVAAGLRGEFGDVQS HHHHHHHCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MIGVADTRLFTTMLDHLICDCDGVLVDSEVIADRVLFETLSATFPHLDFEDAAKSAFGQQ CCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH TSRFLAGLEAHFGIRMPDGFIETIERNIETGLAQSLAPITGVRDALLKVSLPAAVVSNSR HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCH LVRVRSSLKRASLTEIFGDRVFSSEQVARPKPYPDVYLHAANTLGVAPARCIVVEDSVSG HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCC LNAARAAGMKTIAFVGASHIPDNYADALRAMGITRIMRRMDELPALVAAGLRGEFGDVQS HHHHHHHCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7686882; 9278503 [H]