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The map label for this gene is glpD

Identifier: 115352781

GI number: 115352781

Start: 3007058

End: 3008581

Strand: Direct

Name: glpD

Synonym: Bamb_2730

Alternate gene names: 115352781

Gene position: 3007058-3008581 (Clockwise)

Preceding gene: 115352779

Following gene: 115352782

Centisome position: 84.55

GC content: 69.55

Gene sequence:

>1524_bases
GTGACCCAACCGAATCGCTACGATCTGCTCGTCGTCGGCGGCGGCATCAACGGCGCGGGCATCGCGCGCGATGCGGCCGG
CCGCGGCCTGTCGGTCCTGCTCTGCGAGCAGGACGACCTCGCGTCGCACACGTCGTCGTGCAGCACGAAGCTGATTCACG
GCGGCCTGCGCTATCTCGAATACAACGAATTCGGACTCGTCCGCAAAGCGCTGCAGGAGCGCGAGACACTGCTGCGCGCG
GCGCCGCACATCATGTGGCCGCTGCGCTTCGTGATGCCGCACATGCCGAACCTGCGGCCGGCCTGGCTGATCCGCATCGG
CCTGTTCCTCTACGATCACCTCGCGAAACGCGAACTGCTGCCCGGCTCGCGCGGCATCGACATGCGCCGCCATGCGGCCG
GCGCGCCGCTGATCGACTCGATCAAGCGCGGCTTCGTGTATTCGGACGGCTGGGTCGACGATGCGCGCCTCGTCGTGCTG
AACGCGCTCGACGCGAAGGAGCGCGGCGCCGAGATCCTCACGCGCACGAAGCTCGTGTCGGCGGAGCGCCACGGCGACGA
ATGGGAAGCGCGGCTGCAGCACGCGGACGGCTCGATTCGCGTCGTGCGCGCGCGCGCGGTCGCGAACGCGGCCGGCCCGT
GGGTCGGCGACGTGCTGCACGGCGCGCTCGGCCGCGGCGCGCAGCACAGCGTACGGCTCGTGAAGGGCAGCCACATCATC
ACGCGGCGCCTGTTCGATCACGACCACGCGTACATCTTCCAGAACCCGGACAAGCGGATCATCTTCGCGATTCCGTACGA
GCACGATTTCACGCTGATCGGCACGACCGACGTCGAATACACGAACGATCCCGCGAAGGTCGCGATCGATCGCGACGAGA
CGCAGTATCTGTGCGATTCGATCAACCGCTATTTCAAGCGCAAGATCTCGCCGGCCGACGTGCACTGGACCTATTCGGGC
GTGCGCCCGCTGCTCGAGGACGAGAACGCCGCGAACGCATCGGCCGTCACGCGGGACTACCGCCTCGAGCTGGACGACGG
CGCTGGCGCGCCGCTGCTGTCGGTATTCGGCGGCAAGATCACGACCTTCCGCAAGCTCGCGGAAGAAGCCGGCGACCTGC
TGTGCGGCGCGCTCGGCCGCGATGCGAAGACCTGGACCGCCGGCGCGCCGCTGCCGGGCGGCGACATCGCGAACGCGAAG
TTCGACGTGTTCGCCGATGCGTTCGCGAAGCGCCATCCGTGGCTGCCCGCCGCGCTCGCGCGCCGCTATGCGCGTGCGTA
CGGCACGCGCGCCGAACGCGTGGTCGACGGCGCGCGCTCGCTTACCGATCTCGGCACCGAAATCGCGCCGGGCCTCTACG
ACGCCGAACTGCGCTACCTGCGCGACGTCGAATGGGCGACCTGCGCGCAGGACGTGCTGTGGCGTCGCTCGAAGCTCGGC
CTGCACGTCGCGCCGGGCACGCTCGACGCGGTGACGGCCGCGGTCGACGCGTGGTTCGCCGCCGCGCACGCGCCGCACGC
GTAA

Upstream 100 bases:

>100_bases
GCCCCGCTTTTTCGAACTTTACTTTTTCGATTTCGTTCGTTAAATTTCGAATTCGAACATTTCATGTTCGCCCATTTCCA
TCAGACGATAAGGACAGCAG

Downstream 100 bases:

>100_bases
TCCGTTTGCAGTTGCAGTTGTCTTACCGATGTTGATTCACCGACGCGCCGCCCGACATGCGGCGCGCATCACAACTACGC
CGATCCACGGATGGAGATGA

Product: glycerol-3-phosphate dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 507; Mature: 506

Protein sequence:

>507_residues
MTQPNRYDLLVVGGGINGAGIARDAAGRGLSVLLCEQDDLASHTSSCSTKLIHGGLRYLEYNEFGLVRKALQERETLLRA
APHIMWPLRFVMPHMPNLRPAWLIRIGLFLYDHLAKRELLPGSRGIDMRRHAAGAPLIDSIKRGFVYSDGWVDDARLVVL
NALDAKERGAEILTRTKLVSAERHGDEWEARLQHADGSIRVVRARAVANAAGPWVGDVLHGALGRGAQHSVRLVKGSHII
TRRLFDHDHAYIFQNPDKRIIFAIPYEHDFTLIGTTDVEYTNDPAKVAIDRDETQYLCDSINRYFKRKISPADVHWTYSG
VRPLLEDENAANASAVTRDYRLELDDGAGAPLLSVFGGKITTFRKLAEEAGDLLCGALGRDAKTWTAGAPLPGGDIANAK
FDVFADAFAKRHPWLPAALARRYARAYGTRAERVVDGARSLTDLGTEIAPGLYDAELRYLRDVEWATCAQDVLWRRSKLG
LHVAPGTLDAVTAAVDAWFAAAHAPHA

Sequences:

>Translated_507_residues
MTQPNRYDLLVVGGGINGAGIARDAAGRGLSVLLCEQDDLASHTSSCSTKLIHGGLRYLEYNEFGLVRKALQERETLLRA
APHIMWPLRFVMPHMPNLRPAWLIRIGLFLYDHLAKRELLPGSRGIDMRRHAAGAPLIDSIKRGFVYSDGWVDDARLVVL
NALDAKERGAEILTRTKLVSAERHGDEWEARLQHADGSIRVVRARAVANAAGPWVGDVLHGALGRGAQHSVRLVKGSHII
TRRLFDHDHAYIFQNPDKRIIFAIPYEHDFTLIGTTDVEYTNDPAKVAIDRDETQYLCDSINRYFKRKISPADVHWTYSG
VRPLLEDENAANASAVTRDYRLELDDGAGAPLLSVFGGKITTFRKLAEEAGDLLCGALGRDAKTWTAGAPLPGGDIANAK
FDVFADAFAKRHPWLPAALARRYARAYGTRAERVVDGARSLTDLGTEIAPGLYDAELRYLRDVEWATCAQDVLWRRSKLG
LHVAPGTLDAVTAAVDAWFAAAHAPHA
>Mature_506_residues
TQPNRYDLLVVGGGINGAGIARDAAGRGLSVLLCEQDDLASHTSSCSTKLIHGGLRYLEYNEFGLVRKALQERETLLRAA
PHIMWPLRFVMPHMPNLRPAWLIRIGLFLYDHLAKRELLPGSRGIDMRRHAAGAPLIDSIKRGFVYSDGWVDDARLVVLN
ALDAKERGAEILTRTKLVSAERHGDEWEARLQHADGSIRVVRARAVANAAGPWVGDVLHGALGRGAQHSVRLVKGSHIIT
RRLFDHDHAYIFQNPDKRIIFAIPYEHDFTLIGTTDVEYTNDPAKVAIDRDETQYLCDSINRYFKRKISPADVHWTYSGV
RPLLEDENAANASAVTRDYRLELDDGAGAPLLSVFGGKITTFRKLAEEAGDLLCGALGRDAKTWTAGAPLPGGDIANAKF
DVFADAFAKRHPWLPAALARRYARAYGTRAERVVDGARSLTDLGTEIAPGLYDAELRYLRDVEWATCAQDVLWRRSKLGL
HVAPGTLDAVTAAVDAWFAAAHAPHA

Specific function: Conversion Of Glycerol 3-Phosphate To Dihydroxyacetone. Uses Molecular Oxygen Or Nitrate As Electron Acceptor. [C]

COG id: COG0578

COG function: function code C; Glycerol-3-phosphate dehydrogenase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI285002233, Length=515, Percent_Identity=28.5436893203883, Blast_Score=166, Evalue=7e-41,
Organism=Homo sapiens, GI285002231, Length=515, Percent_Identity=28.5436893203883, Blast_Score=166, Evalue=7e-41,
Organism=Escherichia coli, GI2367226, Length=454, Percent_Identity=50.2202643171806, Blast_Score=431, Evalue=1e-122,
Organism=Escherichia coli, GI1788574, Length=491, Percent_Identity=27.9022403258656, Blast_Score=94, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI115534726, Length=513, Percent_Identity=29.0448343079922, Blast_Score=154, Evalue=9e-38,
Organism=Caenorhabditis elegans, GI17509253, Length=510, Percent_Identity=28.8235294117647, Blast_Score=146, Evalue=3e-35,
Organism=Saccharomyces cerevisiae, GI6322036, Length=572, Percent_Identity=27.0979020979021, Blast_Score=140, Evalue=4e-34,
Organism=Drosophila melanogaster, GI161077125, Length=529, Percent_Identity=29.6786389413989, Blast_Score=163, Evalue=3e-40,
Organism=Drosophila melanogaster, GI24653942, Length=529, Percent_Identity=29.6786389413989, Blast_Score=163, Evalue=3e-40,
Organism=Drosophila melanogaster, GI24653944, Length=529, Percent_Identity=29.6786389413989, Blast_Score=163, Evalue=3e-40,
Organism=Drosophila melanogaster, GI20130025, Length=529, Percent_Identity=29.6786389413989, Blast_Score=163, Evalue=3e-40,
Organism=Drosophila melanogaster, GI24586295, Length=384, Percent_Identity=29.1666666666667, Blast_Score=105, Evalue=8e-23,
Organism=Drosophila melanogaster, GI19921278, Length=518, Percent_Identity=25.0965250965251, Blast_Score=94, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR000447 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: =1.1.5.3 [H]

Molecular weight: Translated: 55922; Mature: 55791

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: PS00977 FAD_G3PDH_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQPNRYDLLVVGGGINGAGIARDAAGRGLSVLLCEQDDLASHTSSCSTKLIHGGLRYLE
CCCCCCEEEEEEECCCCCCCCCHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCHHHEE
YNEFGLVRKALQERETLLRAAPHIMWPLRFVMPHMPNLRPAWLIRIGLFLYDHLAKRELL
ECHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC
PGSRGIDMRRHAAGAPLIDSIKRGFVYSDGWVDDARLVVLNALDAKERGAEILTRTKLVS
CCCCCCCHHHHHCCCCHHHHHHHCCEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH
AERHGDEWEARLQHADGSIRVVRARAVANAAGPWVGDVLHGALGRGAQHSVRLVKGSHII
HHHCCCHHHHHHHCCCCCEEEEEEHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEECCHHH
TRRLFDHDHAYIFQNPDKRIIFAIPYEHDFTLIGTTDVEYTNDPAKVAIDRDETQYLCDS
HHHHHCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCEECCCCCEEEECCCHHHHHHHH
INRYFKRKISPADVHWTYSGVRPLLEDENAANASAVTRDYRLELDDGAGAPLLSVFGGKI
HHHHHHHCCCCCCEEEECCCCCCHHCCCCCCCHHHCCEEEEEEECCCCCCCHHHHHCCCH
TTFRKLAEEAGDLLCGALGRDAKTWTAGAPLPGGDIANAKFDVFADAFAKRHPWLPAALA
HHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHH
RRYARAYGTRAERVVDGARSLTDLGTEIAPGLYDAELRYLRDVEWATCAQDVLWRRSKLG
HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCC
LHVAPGTLDAVTAAVDAWFAAAHAPHA
EEECCCCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TQPNRYDLLVVGGGINGAGIARDAAGRGLSVLLCEQDDLASHTSSCSTKLIHGGLRYLE
CCCCCEEEEEEECCCCCCCCCHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCHHHEE
YNEFGLVRKALQERETLLRAAPHIMWPLRFVMPHMPNLRPAWLIRIGLFLYDHLAKRELL
ECHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC
PGSRGIDMRRHAAGAPLIDSIKRGFVYSDGWVDDARLVVLNALDAKERGAEILTRTKLVS
CCCCCCCHHHHHCCCCHHHHHHHCCEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH
AERHGDEWEARLQHADGSIRVVRARAVANAAGPWVGDVLHGALGRGAQHSVRLVKGSHII
HHHCCCHHHHHHHCCCCCEEEEEEHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEECCHHH
TRRLFDHDHAYIFQNPDKRIIFAIPYEHDFTLIGTTDVEYTNDPAKVAIDRDETQYLCDS
HHHHHCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCEECCCCCEEEECCCHHHHHHHH
INRYFKRKISPADVHWTYSGVRPLLEDENAANASAVTRDYRLELDDGAGAPLLSVFGGKI
HHHHHHHCCCCCCEEEECCCCCCHHCCCCCCCHHHCCEEEEEEECCCCCCCHHHHHCCCH
TTFRKLAEEAGDLLCGALGRDAKTWTAGAPLPGGDIANAKFDVFADAFAKRHPWLPAALA
HHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHH
RRYARAYGTRAERVVDGARSLTDLGTEIAPGLYDAELRYLRDVEWATCAQDVLWRRSKLG
HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCC
LHVAPGTLDAVTAAVDAWFAAAHAPHA
EEECCCCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8157588; 10984043 [H]