| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115352669
Identifier: 115352669
GI number: 115352669
Start: 2881767
End: 2883089
Strand: Direct
Name: 115352669
Synonym: Bamb_2618
Alternate gene names: NA
Gene position: 2881767-2883089 (Clockwise)
Preceding gene: 115352668
Following gene: 115352671
Centisome position: 81.03
GC content: 72.03
Gene sequence:
>1323_bases ATGGGTGACGGCAGGACGCGGCGCAACACGCCGACGCAACGACAGCAGCGCGACGAAGCGGACGGGTCGCACGCCGACGG GCAGTTCGACCTGTTCGGCGCGCCGCCCGACGACGCACGCGCGGCGGCTGCGCCCTTCGACGATGACCACCCAGCCGGTG CCGGCGAACGCGTGACGCCTGGCAAGCACGATGCCGCGCAACTGGCAAAGTCGCCTGCGCGCGCGGGCCGTGCGTCGCCC CGCCCTTCCTCCGATCAGGAACCGGAACCGCCCGCCGCCTCAGGGCTGCTGTGGGACGACCCGTTGCCGCCTGCCACGCC GCCGAAGAAGAGCAGGCGCCAGCGCGGCGTGCCGCCCGCACCGGTTTCCGCGGAAGTCGCCGACGTGGCGGCCGCCCTGC CGCCGAATGTGCGGCTCGGCACGTCGTCGTGGTATTTCCCCGGCTGGGACGGCATCGTCTACGACGGCGATTTCGCGCAG ACGAAACTGTCGCGCGAGGGGCTCGAAGCGTACGGCGCGCATCCGCTGCTGAAGAGCGTAAGCCTCGACCGCTCGTTCTA CGGCCCGCTGTCGGTGGCCGACTACCTGCGCTACGCACAACAGGTGCCGGACGACTTCCGCTTCGTCGTGAAGGCGCCGG CGTCCGTCACCGACGCGGTCGTGCGCGGCCGGCGCGGCGAGCCGTCGGGCCCGAACCCGACCTTTCTCGACGCGCAGCTC GCCATCCGGGAATTCGTGCAGCCGTGCATCGAAGGGCTCGGCAAGAAGGCCGGCGTGCTGGTGTTCCAGTTTTCGCCGAT GCCCGATCAACTGCTCGTCGAACCGGCCGCGCTGATCGACCGGCTGTCGGCGTTCTTCGCGGCGCTGCCGCCGCTGCCGC TAGACGCCGACGGCACGCGCTACGCGATCGAGATCCGCGACGCGTGCCTGCTCACGCCGCGCTTCATCCGCGCGCTCGCG GCGCTGGGCGTGCGCTACTGCGTCGGCCTGCATGCGCGGATGCCCGACCCGCTGCGCCAGGCGGCCGCGCTCGCGCTGCT CGACGGCGACGCGCCGGGCCCGCTGATCGTGCGGTGGAGCCTGCACGGCGGATTCAAGTACGAACAGGCGAAGGCGAAGT ACGAGCCGTTCGACAAGCTCGTCGACGAAGATCCGGCCACGCGCTCGGCGCTCGCCGAGCTGGCCGCGCGCTACGCGCTG GCCGGACAGCCGGTGATCATCACGATCAACAACAAGGCGGAAGGCTCCGCGCCGCTGTCGTGCGTCGCGCTCGCGCGCGA GATCGCCGCCGCGTGCGCGCAGTGGCGCAGCGAGGCGGCGTAG
Upstream 100 bases:
>100_bases GCCGCAAGGCCGGACGCAGCGCGAAAACGCTGCCGTGGTCGCGGCGCTATATGTACGAACACACGCTGCCGCGCTAGGCG GCACTTCACGCTGGGCACGC
Downstream 100 bases:
>100_bases GGTTCGGCGGCGGGCGTCTCGCGGCGCCGCCTAGCGCTTGCCGGCCGATTACGCGCCGCGCAGCGACTTCAGCCGGTGCG AGAACTTCTGGCGGAATTTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 440; Mature: 439
Protein sequence:
>440_residues MGDGRTRRNTPTQRQQRDEADGSHADGQFDLFGAPPDDARAAAAPFDDDHPAGAGERVTPGKHDAAQLAKSPARAGRASP RPSSDQEPEPPAASGLLWDDPLPPATPPKKSRRQRGVPPAPVSAEVADVAAALPPNVRLGTSSWYFPGWDGIVYDGDFAQ TKLSREGLEAYGAHPLLKSVSLDRSFYGPLSVADYLRYAQQVPDDFRFVVKAPASVTDAVVRGRRGEPSGPNPTFLDAQL AIREFVQPCIEGLGKKAGVLVFQFSPMPDQLLVEPAALIDRLSAFFAALPPLPLDADGTRYAIEIRDACLLTPRFIRALA ALGVRYCVGLHARMPDPLRQAAALALLDGDAPGPLIVRWSLHGGFKYEQAKAKYEPFDKLVDEDPATRSALAELAARYAL AGQPVIITINNKAEGSAPLSCVALAREIAAACAQWRSEAA
Sequences:
>Translated_440_residues MGDGRTRRNTPTQRQQRDEADGSHADGQFDLFGAPPDDARAAAAPFDDDHPAGAGERVTPGKHDAAQLAKSPARAGRASP RPSSDQEPEPPAASGLLWDDPLPPATPPKKSRRQRGVPPAPVSAEVADVAAALPPNVRLGTSSWYFPGWDGIVYDGDFAQ TKLSREGLEAYGAHPLLKSVSLDRSFYGPLSVADYLRYAQQVPDDFRFVVKAPASVTDAVVRGRRGEPSGPNPTFLDAQL AIREFVQPCIEGLGKKAGVLVFQFSPMPDQLLVEPAALIDRLSAFFAALPPLPLDADGTRYAIEIRDACLLTPRFIRALA ALGVRYCVGLHARMPDPLRQAAALALLDGDAPGPLIVRWSLHGGFKYEQAKAKYEPFDKLVDEDPATRSALAELAARYAL AGQPVIITINNKAEGSAPLSCVALAREIAAACAQWRSEAA >Mature_439_residues GDGRTRRNTPTQRQQRDEADGSHADGQFDLFGAPPDDARAAAAPFDDDHPAGAGERVTPGKHDAAQLAKSPARAGRASPR PSSDQEPEPPAASGLLWDDPLPPATPPKKSRRQRGVPPAPVSAEVADVAAALPPNVRLGTSSWYFPGWDGIVYDGDFAQT KLSREGLEAYGAHPLLKSVSLDRSFYGPLSVADYLRYAQQVPDDFRFVVKAPASVTDAVVRGRRGEPSGPNPTFLDAQLA IREFVQPCIEGLGKKAGVLVFQFSPMPDQLLVEPAALIDRLSAFFAALPPLPLDADGTRYAIEIRDACLLTPRFIRALAA LGVRYCVGLHARMPDPLRQAAALALLDGDAPGPLIVRWSLHGGFKYEQAKAKYEPFDKLVDEDPATRSALAELAARYALA GQPVIITINNKAEGSAPLSCVALAREIAAACAQWRSEAA
Specific function: Unknown
COG id: COG1801
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47058; Mature: 46927
Theoretical pI: Translated: 6.01; Mature: 6.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGDGRTRRNTPTQRQQRDEADGSHADGQFDLFGAPPDDARAAAAPFDDDHPAGAGERVTP CCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC GKHDAAQLAKSPARAGRASPRPSSDQEPEPPAASGLLWDDPLPPATPPKKSRRQRGVPPA CCCHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC PVSAEVADVAAALPPNVRLGTSSWYFPGWDGIVYDGDFAQTKLSREGLEAYGAHPLLKSV CCCHHHHHHHHHCCCCCEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCHHHHHH SLDRSFYGPLSVADYLRYAQQVPDDFRFVVKAPASVTDAVVRGRRGEPSGPNPTFLDAQL HCCCHHCCCHHHHHHHHHHHHCCHHHEEEEECCCHHHHHHHHCCCCCCCCCCCCEEHHHH AIREFVQPCIEGLGKKAGVLVFQFSPMPDQLLVEPAALIDRLSAFFAALPPLPLDADGTR HHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCE YAIEIRDACLLTPRFIRALAALGVRYCVGLHARMPDPLRQAAALALLDGDAPGPLIVRWS EEEEECCHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEECCCCCCCEEEEEE LHGGFKYEQAKAKYEPFDKLVDEDPATRSALAELAARYALAGQPVIITINNKAEGSAPLS CCCCCEEHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHH CVALAREIAAACAQWRSEAA HHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure GDGRTRRNTPTQRQQRDEADGSHADGQFDLFGAPPDDARAAAAPFDDDHPAGAGERVTP CCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC GKHDAAQLAKSPARAGRASPRPSSDQEPEPPAASGLLWDDPLPPATPPKKSRRQRGVPPA CCCHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC PVSAEVADVAAALPPNVRLGTSSWYFPGWDGIVYDGDFAQTKLSREGLEAYGAHPLLKSV CCCHHHHHHHHHCCCCCEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCHHHHHH SLDRSFYGPLSVADYLRYAQQVPDDFRFVVKAPASVTDAVVRGRRGEPSGPNPTFLDAQL HCCCHHCCCHHHHHHHHHHHHCCHHHEEEEECCCHHHHHHHHCCCCCCCCCCCCEEHHHH AIREFVQPCIEGLGKKAGVLVFQFSPMPDQLLVEPAALIDRLSAFFAALPPLPLDADGTR HHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCE YAIEIRDACLLTPRFIRALAALGVRYCVGLHARMPDPLRQAAALALLDGDAPGPLIVRWS EEEEECCHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEECCCCCCCEEEEEE LHGGFKYEQAKAKYEPFDKLVDEDPATRSALAELAARYALAGQPVIITINNKAEGSAPLS CCCCCEEHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHH CVALAREIAAACAQWRSEAA HHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA