| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is yajQ [C]
Identifier: 115352654
GI number: 115352654
Start: 2867130
End: 2867615
Strand: Direct
Name: yajQ [C]
Synonym: Bamb_2603
Alternate gene names: 115352654
Gene position: 2867130-2867615 (Clockwise)
Preceding gene: 115352652
Following gene: 115352657
Centisome position: 80.62
GC content: 60.08
Gene sequence:
>486_bases ATGCCATCGTTCGACGTCGTTTCCGAAGCGAACATGATCGAAGTGAAGAACGCCATCGAGCAGTCGAACAAGGAAATTTC GACGCGCTTCGACTTCAAGGGCTCCGACGCGCGCGTCGAGCAGAAGGAGCGCGAGCTGACGCTATTCGCCGACGACGATT TCAAGCTCGGCCAGGTCAAGGACGTGCTGATCAACAAGCTCGCGAAGCGCAACGTCGACGTGCGCTTCCTCGACTACGGC AAGGTCGAGAAGATCGGCGGCGACAAGGTCAAGCAGATCGTCACCGTGAAGAAGGGCGTGACGGGCGACCTCGCGAAGAA GATCGTCAGGCTCGTGAAAGACAGCAAGATCAAGGTGCAGGCGAGCATCCAGGGCGACGCGGTGCGCGTGACCGGCACGA AGCGCGACGATCTGCAGAGCGTGATCGCGATGCTGCGCAAGGAGGTGACCGACACCCCGCTCGACTTCAACAACTTCCGC GACTGA
Upstream 100 bases:
>100_bases CTTGGGCAAACGCAGGGGCATCGGTAAAATGGCAAACAGTCCGCAATTATAGCGAGTGCCCGCGCGCAAGCCGGGCGCTT GCATCTCAAGGGAGAATGCC
Downstream 100 bases:
>100_bases TCGACGCCGTCGACCGGTCACTCCGCGCCGCCGGGCCCCGCATGCGGGACGCCCCGGCGGGCGGCGACAGCAGCAACCCC TTCCTCAGAGCTTCCCGCCG
Product: putative nucleotide-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 161; Mature: 160
Protein sequence:
>161_residues MPSFDVVSEANMIEVKNAIEQSNKEISTRFDFKGSDARVEQKERELTLFADDDFKLGQVKDVLINKLAKRNVDVRFLDYG KVEKIGGDKVKQIVTVKKGVTGDLAKKIVRLVKDSKIKVQASIQGDAVRVTGTKRDDLQSVIAMLRKEVTDTPLDFNNFR D
Sequences:
>Translated_161_residues MPSFDVVSEANMIEVKNAIEQSNKEISTRFDFKGSDARVEQKERELTLFADDDFKLGQVKDVLINKLAKRNVDVRFLDYG KVEKIGGDKVKQIVTVKKGVTGDLAKKIVRLVKDSKIKVQASIQGDAVRVTGTKRDDLQSVIAMLRKEVTDTPLDFNNFR D >Mature_160_residues PSFDVVSEANMIEVKNAIEQSNKEISTRFDFKGSDARVEQKERELTLFADDDFKLGQVKDVLINKLAKRNVDVRFLDYGK VEKIGGDKVKQIVTVKKGVTGDLAKKIVRLVKDSKIKVQASIQGDAVRVTGTKRDDLQSVIAMLRKEVTDTPLDFNNFRD
Specific function: Unknown
COG id: COG1666
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0234 family [H]
Homologues:
Organism=Escherichia coli, GI87081737, Length=163, Percent_Identity=41.7177914110429, Blast_Score=126, Evalue=6e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007551 [H]
Pfam domain/function: PF04461 DUF520 [H]
EC number: NA
Molecular weight: Translated: 18147; Mature: 18016
Theoretical pI: Translated: 9.95; Mature: 9.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSFDVVSEANMIEVKNAIEQSNKEISTRFDFKGSDARVEQKERELTLFADDDFKLGQVK CCCCCCCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCHHHHCCCEEEEEECCCCCCHHHH DVLINKLAKRNVDVRFLDYGKVEKIGGDKVKQIVTVKKGVTGDLAKKIVRLVKDSKIKVQ HHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEE ASIQGDAVRVTGTKRDDLQSVIAMLRKEVTDTPLDFNNFRD EEECCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure PSFDVVSEANMIEVKNAIEQSNKEISTRFDFKGSDARVEQKERELTLFADDDFKLGQVK CCCCCCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCHHHHCCCEEEEEECCCCCCHHHH DVLINKLAKRNVDVRFLDYGKVEKIGGDKVKQIVTVKKGVTGDLAKKIVRLVKDSKIKVQ HHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEE ASIQGDAVRVTGTKRDDLQSVIAMLRKEVTDTPLDFNNFRD EEECCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA