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The map label for this gene is yegW [H]

Identifier: 115352631

GI number: 115352631

Start: 2842793

End: 2843569

Strand: Direct

Name: yegW [H]

Synonym: Bamb_2580

Alternate gene names: 115352631

Gene position: 2842793-2843569 (Clockwise)

Preceding gene: 115352629

Following gene: 115352633

Centisome position: 79.93

GC content: 66.67

Gene sequence:

>777_bases
ATGGCCGGCAACCTGATCGATACCCATTCCATGAAGTCACCCACGGACGACCGCTGGCAGGACCTGCGCCCCGACCCCGA
CAACGACACGCCGCTCTATCTGCAGCTCGCCCGCAAGCTCGGCGACGCGATCCACGACAATCGCTGGGCGGCTGGCGAGG
CGCTACCGTCCGAGCGTGTGCTGTCCGAAGCGCTCGGCGTGTCGCGCATCACCGCGCGCAAGGCGATCGCGCTGCTCGTC
GAGCAGGGCCTGATCCGCCGCACGCAAGGCGCCGGCAACTTCATCCAGCCGCGTTACGAGGATCCGCTGTCGCGGCTGTC
GAGCTTCAGCGAGATGCTCGAGCGCCGCGGCTTCAAGCCGAGCTCGCAATGGCTCGAGCGCGAAATCCAGCCGGCGAACC
GCGACGAAGTGATTCAGCTCGGGCTGTCGCCGGCCGCATCCGTTACACGGCTGAAGCGCCTGCGCCTCGCCGACGGCATC
GTGATGGCCGTCGAGAACTCGACGTTCCCCGCTACGCTGATTCCCGATCCGCAGGCGATCGGCGGTTCGCTGTACAGCTA
TCTCGAAGCGCGCGGCACGCCGATCGTGCGCGCGCTGCAGCATTTCCGCGCAGTCAACGCGACCGACGAGATCGCGCAAC
AGATGGGCATCGCGCCGCACGACGCGCTGCTGCTGATCACGCGGATCGGCTACACGGCCGACCAGCGCGCGATCGAGCTC
ACCGATACCTACTGCCGCAACGATTACTACGACTTCGTCGTCGAGCTGCGCAAGTAA

Upstream 100 bases:

>100_bases
CCGAAGCATCGAATACGACGCATCAGTGTAGTCAATCCGTGCGGCCTTCACGTATTACACGGCAAAAACCGGCTATAACG
GCGCCGCATGATGACTTAGA

Downstream 100 bases:

>100_bases
CGGGCACGGTGCCCCCGGCGCTCACAGCCAGCGCGCGTCGTCCGTGCCGAGCGGAACGGGCGGCCGGGCGAAGCACGGCG
GCGTCGCCGACAGGCGTTCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MAGNLIDTHSMKSPTDDRWQDLRPDPDNDTPLYLQLARKLGDAIHDNRWAAGEALPSERVLSEALGVSRITARKAIALLV
EQGLIRRTQGAGNFIQPRYEDPLSRLSSFSEMLERRGFKPSSQWLEREIQPANRDEVIQLGLSPAASVTRLKRLRLADGI
VMAVENSTFPATLIPDPQAIGGSLYSYLEARGTPIVRALQHFRAVNATDEIAQQMGIAPHDALLLITRIGYTADQRAIEL
TDTYCRNDYYDFVVELRK

Sequences:

>Translated_258_residues
MAGNLIDTHSMKSPTDDRWQDLRPDPDNDTPLYLQLARKLGDAIHDNRWAAGEALPSERVLSEALGVSRITARKAIALLV
EQGLIRRTQGAGNFIQPRYEDPLSRLSSFSEMLERRGFKPSSQWLEREIQPANRDEVIQLGLSPAASVTRLKRLRLADGI
VMAVENSTFPATLIPDPQAIGGSLYSYLEARGTPIVRALQHFRAVNATDEIAQQMGIAPHDALLLITRIGYTADQRAIEL
TDTYCRNDYYDFVVELRK
>Mature_257_residues
AGNLIDTHSMKSPTDDRWQDLRPDPDNDTPLYLQLARKLGDAIHDNRWAAGEALPSERVLSEALGVSRITARKAIALLVE
QGLIRRTQGAGNFIQPRYEDPLSRLSSFSEMLERRGFKPSSQWLEREIQPANRDEVIQLGLSPAASVTRLKRLRLADGIV
MAVENSTFPATLIPDPQAIGGSLYSYLEARGTPIVRALQHFRAVNATDEIAQQMGIAPHDALLLITRIGYTADQRAIELT
DTYCRNDYYDFVVELRK

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788418, Length=228, Percent_Identity=33.3333333333333, Blast_Score=129, Evalue=1e-31,
Organism=Escherichia coli, GI1786950, Length=228, Percent_Identity=31.140350877193, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1790118, Length=233, Percent_Identity=29.6137339055794, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1790540, Length=228, Percent_Identity=28.5087719298246, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI87082252, Length=221, Percent_Identity=27.6018099547511, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 28898; Mature: 28767

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGNLIDTHSMKSPTDDRWQDLRPDPDNDTPLYLQLARKLGDAIHDNRWAAGEALPSERV
CCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
LSEALGVSRITARKAIALLVEQGLIRRTQGAGNFIQPRYEDPLSRLSSFSEMLERRGFKP
HHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
SSQWLEREIQPANRDEVIQLGLSPAASVTRLKRLRLADGIVMAVENSTFPATLIPDPQAI
HHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCEEEEEECCCCCEEECCCCHHH
GGSLYSYLEARGTPIVRALQHFRAVNATDEIAQQMGIAPHDALLLITRIGYTADQRAIEL
HHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHEEH
TDTYCRNDYYDFVVELRK
HHHHHHCCHHHHHHHCCC
>Mature Secondary Structure 
AGNLIDTHSMKSPTDDRWQDLRPDPDNDTPLYLQLARKLGDAIHDNRWAAGEALPSERV
CCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
LSEALGVSRITARKAIALLVEQGLIRRTQGAGNFIQPRYEDPLSRLSSFSEMLERRGFKP
HHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
SSQWLEREIQPANRDEVIQLGLSPAASVTRLKRLRLADGIVMAVENSTFPATLIPDPQAI
HHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCEEEEEECCCCCEEECCCCHHH
GGSLYSYLEARGTPIVRALQHFRAVNATDEIAQQMGIAPHDALLLITRIGYTADQRAIEL
HHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHEEH
TDTYCRNDYYDFVVELRK
HHHHHHCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]