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The map label for this gene is radC

Identifier: 115352599

GI number: 115352599

Start: 2804586

End: 2805362

Strand: Direct

Name: radC

Synonym: Bamb_2548

Alternate gene names: 115352599

Gene position: 2804586-2805362 (Clockwise)

Preceding gene: 115352590

Following gene: 115352600

Centisome position: 78.86

GC content: 72.33

Gene sequence:

>777_bases
ATGCTGTCACCTTGCCTCGCCGCCCCGGCGACCGAATGTCGCGACCCCGCCGATGCGCCGGCCGCTCCGGCCCGCCACAC
GGGCCCGGCCCGGCCGCGCAAGCGCCGCCCGCGAAACTGGAAGCCGCATCTGCCGCGCGAGCGGTTGCTGGAACGCGGGC
CGGCCGCGCTGACCGACGCGGAGCTGATCGCGCTGCTGCTCGGCACCGGCGGCGGCGGCCGCGATGTATTCGCCAGCGCC
CGCGCGCTGCTCGCGCGGTTCGGCGACTCGCTGCGCGACATGCTCGATGCCGAGCCGGACGTGTTCGCCACGCACCCGGG
CATCGGCACGGCGCGCTCGGCGGTGCTGATCGCCGTGACCGAGATCGTGCGGCGCGCGCTGGTCGAAAAAGCGCGCGAGC
GGCTGCAGATCGATTCGCCGGGCGCGGTCGAGGACTATCTGCGGCTCAGGATCGGCACGCGTCCGCACGAGGTGTTCGTC
ACGCTGTACCTCGACGCCCGTCACGGCCTCATCGACGTGGAAGAAAGCGCCCGCGGCTCGCTCACGCGGATGGCCGTCTA
TCCGCGCGAGATTGTGCGACGCGCGCTCGTGCTGAATGCCGCGGCGCTGATCATCGCGCACAACCACCCGTCCGGCGCGG
TGCAGCCGAGCGCCGAAGACCGGCGCCTGACGCGCGTGCTGCACGAGGCGCTCGCGCTCATCGACGCGAAGCTGCTCGAT
CACGTGGTCGTCGGCACCGCCGATACATTTTCGTTCGCGCGTGCCGGTTGGCTGTAG

Upstream 100 bases:

>100_bases
AAAGGCCCGGCGCAAAGCCAATATTGTAAGTCACCTGAGCGCGCAAGGCTGAAAGTGCGACGACGTCGCATCCACGCCCG
CCGCCAATGGAGTTTCGCTC

Downstream 100 bases:

>100_bases
ACTGTGGCCCGGCGACCCGCCCTGGGGCGCCGCGACGATGAAGCGAAATTGGGTTTGATTTTTCTGAACTTTTTCTGCTA
GAATCATCGTCTGTCTTTTT

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MLSPCLAAPATECRDPADAPAAPARHTGPARPRKRRPRNWKPHLPRERLLERGPAALTDAELIALLLGTGGGGRDVFASA
RALLARFGDSLRDMLDAEPDVFATHPGIGTARSAVLIAVTEIVRRALVEKARERLQIDSPGAVEDYLRLRIGTRPHEVFV
TLYLDARHGLIDVEESARGSLTRMAVYPREIVRRALVLNAAALIIAHNHPSGAVQPSAEDRRLTRVLHEALALIDAKLLD
HVVVGTADTFSFARAGWL

Sequences:

>Translated_258_residues
MLSPCLAAPATECRDPADAPAAPARHTGPARPRKRRPRNWKPHLPRERLLERGPAALTDAELIALLLGTGGGGRDVFASA
RALLARFGDSLRDMLDAEPDVFATHPGIGTARSAVLIAVTEIVRRALVEKARERLQIDSPGAVEDYLRLRIGTRPHEVFV
TLYLDARHGLIDVEESARGSLTRMAVYPREIVRRALVLNAAALIIAHNHPSGAVQPSAEDRRLTRVLHEALALIDAKLLD
HVVVGTADTFSFARAGWL
>Mature_258_residues
MLSPCLAAPATECRDPADAPAAPARHTGPARPRKRRPRNWKPHLPRERLLERGPAALTDAELIALLLGTGGGGRDVFASA
RALLARFGDSLRDMLDAEPDVFATHPGIGTARSAVLIAVTEIVRRALVEKARERLQIDSPGAVEDYLRLRIGTRPHEVFV
TLYLDARHGLIDVEESARGSLTRMAVYPREIVRRALVLNAAALIIAHNHPSGAVQPSAEDRRLTRVLHEALALIDAKLLD
HVVVGTADTFSFARAGWL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=222, Percent_Identity=38.2882882882883, Blast_Score=168, Evalue=4e-43,
Organism=Escherichia coli, GI1788997, Length=120, Percent_Identity=44.1666666666667, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI2367100, Length=120, Percent_Identity=45.8333333333333, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1788312, Length=143, Percent_Identity=40.5594405594406, Blast_Score=102, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 28066; Mature: 28066

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSPCLAAPATECRDPADAPAAPARHTGPARPRKRRPRNWKPHLPRERLLERGPAALTDA
CCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHCCCCCHHHH
ELIALLLGTGGGGRDVFASARALLARFGDSLRDMLDAEPDVFATHPGIGTARSAVLIAVT
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHH
EIVRRALVEKARERLQIDSPGAVEDYLRLRIGTRPHEVFVTLYLDARHGLIDVEESARGS
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEEEEEEEEECCCCEEECCHHCCCC
LTRMAVYPREIVRRALVLNAAALIIAHNHPSGAVQPSAEDRRLTRVLHEALALIDAKLLD
HHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
HVVVGTADTFSFARAGWL
HHHHCCCHHHHHHHHCCC
>Mature Secondary Structure
MLSPCLAAPATECRDPADAPAAPARHTGPARPRKRRPRNWKPHLPRERLLERGPAALTDA
CCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHCCCCCHHHH
ELIALLLGTGGGGRDVFASARALLARFGDSLRDMLDAEPDVFATHPGIGTARSAVLIAVT
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHH
EIVRRALVEKARERLQIDSPGAVEDYLRLRIGTRPHEVFVTLYLDARHGLIDVEESARGS
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEEEEEEEEECCCCEEECCHHCCCC
LTRMAVYPREIVRRALVLNAAALIIAHNHPSGAVQPSAEDRRLTRVLHEALALIDAKLLD
HHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
HVVVGTADTFSFARAGWL
HHHHCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA