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The map label for this gene is fanD [H]

Identifier: 115352526

GI number: 115352526

Start: 2728258

End: 2730504

Strand: Direct

Name: fanD [H]

Synonym: Bamb_2475

Alternate gene names: 115352526

Gene position: 2728258-2730504 (Clockwise)

Preceding gene: 115352525

Following gene: 115352527

Centisome position: 76.71

GC content: 70.67

Gene sequence:

>2247_bases
ATGCCCACGCCCACGCCCGCGCCCGCCTCCGACGCACTGTTTCTCGACGTCTCGCTCAATGGCGAACCGACGCACCGGAT
CGCACGCTTCCAGCAAATCGACGGACGCCTGTACGCGGCCTCCGCCGACCTGAACGACCTGGGTATCGCGACGAACGACC
GGACGAACGACCGCACGCAGGAGCCGTCGAACGTGCTCGTCGCGCTCGACACGCTCGCCGGGCTGCGCTACGACTACGAC
GCGGGCCGGCAGACGCTCGACCTGCGCGTGCCCGATGCGCTGCGCATCCCGCACACGTTCGATACGCGCGCCCTCGCGGC
CGCGCCGCCCGCCACGTCCGGCCGCGGCTTCGTGCTGAACTACGACGCCTACGCGCAGACCATCGCCCATGCGCCGCTCG
CGGTCTGGAGCGAGGCGCGCTATTTCGACCCGTACGGCGTATTCAGCAGCACCGGCGTCGCGTATCTGTACGACGACCGC
CGGCGCTACGTGCGCTACGACACGTCGTGGAGTCATTCGAACCCCGGCACGCTCACGACGACCCAGATCGGCGACACGAT
TTCGTCGTCGTTGTCGTGGACCCGCTCGCTGCGCATCGGCGGCGTGCAGTGGCGCAGCAATTTCGGCCTGCGTCCCGATC
TGGTCACGTTTCCGGTACCCGCGCTGTCCGGCAGCGCGGTCGTGCCGACCTCGGTCGACCTGTACGTGAACAACGTGCGC
CAGTTCAGCGGCAACGTGGCGAGCGGGCCGTTCGTGATCAACAGCGTGCCCGGCATCACCGGCGCGGGCAACGCAACGGT
CATCACGCGCGACGCGCTCGGCCGCTCGATCGCGACGTCCATTCCGCTGTACGTCGACACGCGCCTGCTCGCCCCCGGCC
TCGCCAGCTATTCGGCGGAAGCCGGGTTCCTGCGCCGCGCCTATGGCATCGATTCCTTCGACTACGCGCGCACGCCGGCC
GCGAGCGGCTCGCTGCGCTACGGCATCAGCGAGCGCCTGACCGTCGAGGCGCATGCGGAAGCGACGGCCGGCGTCTACAA
CGCAGGCGCCGGCGCGCTTGCACGTCTGGGCGAACGCGGCGTGGCGAACGCGTCGCTGGCGCTCAGCGCGCCGGGCCGCA
CCGGCGTGCAGGCCGGCATCGGCTACCAGTACGTGACGCCGCGCTTCTCCATCGATGCGCAGACGCTGCGCGCCTTCGGC
GACTACAGCGACCTCGGCAGCCGCGAAGGCGTGCCGGTATCGCGCGCCACCGACCGCGTCACGGTGTCATTCCCGTTCCT
GCGCAGGCAGACGCTGTCGTTCAGCTATCTCGGCCTCAAGTATCCGGGCGTCGCCGCCTCGCGCATCGGCTCGGTCGCCT
ACCTGGTCAATCTCGGCGGGCTGACCTCGATCACGTTCAGCGGCTTCCAGGACCTCCGGCAGCGCGACACGCGCGGCTTC
TTCGTGAGCCTGAGCATCGGGCTCGGCGGCAACACGTCCGTGTCGTTGAACGCCGGGCGGCAGAACGGCGACTCGACCTA
CACGCTGAGCGCGACACGGCCGCCCGACTATGGCGGCGGCGTCGGCTGGAACGTGCAGGCGGGCGCCAACGCAGGCATGC
GCTACGCGCAGGGGCAGCTGCAGTATCTCGGCCGTGCGGGCGAGGTCACGCTGCTCGCGCAGTCGTTCGACGGGCACCGC
AACGCGTCGGTCGACGTCACGGGCGCGATCGTGCTGATGAACGGCCAGCTGATGACGGCACGCCGCGTCGACGACGGCTT
CGCGCTCGTCTCGACCGACACCGGGCGCGTGCCCGTGCTGCACCAGAACCGGATGATCGGCGAGACGGACCGGGCCGGCT
ACCTGCTCGTACCAGACCTAAATGCGTACCAGAGCAATCGCGTCGCGATCGACGGCACCGCGCTGCCCGCCGACGCCCGG
ATCGCCGACACGACGCTCGATGTCGTGCCGCAGGCGCGCTCCGGCGTGCTCGCGCACTTCGCCGTGACACGCTACAGCGC
CGCGTCGATCGCGCTGCGCGCGCCGGACGGCACGCCGCTGCCGCCCGGGCTCGAGGTGCGCCACGTCGAAACCGGCCAGC
GCACGATCGTCGGCTACGACGGCCTGACCTTCGTCGACGGCCTCGTCGCGAACAACCACCTGGAAATCACCGGCGGCGGC
CGCGATTGCGCGGTCGCGTTCGCGTACCAGCGCCCCGACGACGGCACGCTGCCGCGGATCGGCCCGCTGACCTGCGGCCC
GCGGTGA

Upstream 100 bases:

>100_bases
GCCTACTTCCGTGCCTGCGTCCGTGCCTGCGCCTGTGCCCGTGCCTGTGCCCGTGCCGGTGCCTACGCCCGTGCCTGCGC
CAGTGCCTGCGCCCATGCCC

Downstream 100 bases:

>100_bases
TCCGCGGCCGGCGCGCGCCGGCCGTCAGCCCCGCGAATGTTAGAATTGCAGGATTCCCTCGGCGGCGCACGCCGCCCAAC
TCCCCTTCGAAGAATCGCCA

Product: fimbrial biogenesis outer membrane usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 748; Mature: 747

Protein sequence:

>748_residues
MPTPTPAPASDALFLDVSLNGEPTHRIARFQQIDGRLYAASADLNDLGIATNDRTNDRTQEPSNVLVALDTLAGLRYDYD
AGRQTLDLRVPDALRIPHTFDTRALAAAPPATSGRGFVLNYDAYAQTIAHAPLAVWSEARYFDPYGVFSSTGVAYLYDDR
RRYVRYDTSWSHSNPGTLTTTQIGDTISSSLSWTRSLRIGGVQWRSNFGLRPDLVTFPVPALSGSAVVPTSVDLYVNNVR
QFSGNVASGPFVINSVPGITGAGNATVITRDALGRSIATSIPLYVDTRLLAPGLASYSAEAGFLRRAYGIDSFDYARTPA
ASGSLRYGISERLTVEAHAEATAGVYNAGAGALARLGERGVANASLALSAPGRTGVQAGIGYQYVTPRFSIDAQTLRAFG
DYSDLGSREGVPVSRATDRVTVSFPFLRRQTLSFSYLGLKYPGVAASRIGSVAYLVNLGGLTSITFSGFQDLRQRDTRGF
FVSLSIGLGGNTSVSLNAGRQNGDSTYTLSATRPPDYGGGVGWNVQAGANAGMRYAQGQLQYLGRAGEVTLLAQSFDGHR
NASVDVTGAIVLMNGQLMTARRVDDGFALVSTDTGRVPVLHQNRMIGETDRAGYLLVPDLNAYQSNRVAIDGTALPADAR
IADTTLDVVPQARSGVLAHFAVTRYSAASIALRAPDGTPLPPGLEVRHVETGQRTIVGYDGLTFVDGLVANNHLEITGGG
RDCAVAFAYQRPDDGTLPRIGPLTCGPR

Sequences:

>Translated_748_residues
MPTPTPAPASDALFLDVSLNGEPTHRIARFQQIDGRLYAASADLNDLGIATNDRTNDRTQEPSNVLVALDTLAGLRYDYD
AGRQTLDLRVPDALRIPHTFDTRALAAAPPATSGRGFVLNYDAYAQTIAHAPLAVWSEARYFDPYGVFSSTGVAYLYDDR
RRYVRYDTSWSHSNPGTLTTTQIGDTISSSLSWTRSLRIGGVQWRSNFGLRPDLVTFPVPALSGSAVVPTSVDLYVNNVR
QFSGNVASGPFVINSVPGITGAGNATVITRDALGRSIATSIPLYVDTRLLAPGLASYSAEAGFLRRAYGIDSFDYARTPA
ASGSLRYGISERLTVEAHAEATAGVYNAGAGALARLGERGVANASLALSAPGRTGVQAGIGYQYVTPRFSIDAQTLRAFG
DYSDLGSREGVPVSRATDRVTVSFPFLRRQTLSFSYLGLKYPGVAASRIGSVAYLVNLGGLTSITFSGFQDLRQRDTRGF
FVSLSIGLGGNTSVSLNAGRQNGDSTYTLSATRPPDYGGGVGWNVQAGANAGMRYAQGQLQYLGRAGEVTLLAQSFDGHR
NASVDVTGAIVLMNGQLMTARRVDDGFALVSTDTGRVPVLHQNRMIGETDRAGYLLVPDLNAYQSNRVAIDGTALPADAR
IADTTLDVVPQARSGVLAHFAVTRYSAASIALRAPDGTPLPPGLEVRHVETGQRTIVGYDGLTFVDGLVANNHLEITGGG
RDCAVAFAYQRPDDGTLPRIGPLTCGPR
>Mature_747_residues
PTPTPAPASDALFLDVSLNGEPTHRIARFQQIDGRLYAASADLNDLGIATNDRTNDRTQEPSNVLVALDTLAGLRYDYDA
GRQTLDLRVPDALRIPHTFDTRALAAAPPATSGRGFVLNYDAYAQTIAHAPLAVWSEARYFDPYGVFSSTGVAYLYDDRR
RYVRYDTSWSHSNPGTLTTTQIGDTISSSLSWTRSLRIGGVQWRSNFGLRPDLVTFPVPALSGSAVVPTSVDLYVNNVRQ
FSGNVASGPFVINSVPGITGAGNATVITRDALGRSIATSIPLYVDTRLLAPGLASYSAEAGFLRRAYGIDSFDYARTPAA
SGSLRYGISERLTVEAHAEATAGVYNAGAGALARLGERGVANASLALSAPGRTGVQAGIGYQYVTPRFSIDAQTLRAFGD
YSDLGSREGVPVSRATDRVTVSFPFLRRQTLSFSYLGLKYPGVAASRIGSVAYLVNLGGLTSITFSGFQDLRQRDTRGFF
VSLSIGLGGNTSVSLNAGRQNGDSTYTLSATRPPDYGGGVGWNVQAGANAGMRYAQGQLQYLGRAGEVTLLAQSFDGHRN
ASVDVTGAIVLMNGQLMTARRVDDGFALVSTDTGRVPVLHQNRMIGETDRAGYLLVPDLNAYQSNRVAIDGTALPADARI
ADTTLDVVPQARSGVLAHFAVTRYSAASIALRAPDGTPLPPGLEVRHVETGQRTIVGYDGLTFVDGLVANNHLEITGGGR
DCAVAFAYQRPDDGTLPRIGPLTCGPR

Specific function: Involved in the export and assembly of K99 fimbrial subunits across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1789533, Length=170, Percent_Identity=30.5882352941176, Blast_Score=72, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 79504; Mature: 79372

Theoretical pI: Translated: 8.14; Mature: 8.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTPTPAPASDALFLDVSLNGEPTHRIARFQQIDGRLYAASADLNDLGIATNDRTNDRTQ
CCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHCCEEEEEECCCCCCCEECCCCCCCCCC
EPSNVLVALDTLAGLRYDYDAGRQTLDLRVPDALRIPHTFDTRALAAAPPATSGRGFVLN
CCCCEEEEEEHHHCCEEECCCCCEEEEEECCCCEECCCCCCCCEEECCCCCCCCCEEEEE
YDAYAQTIAHAPLAVWSEARYFDPYGVFSSTGVAYLYDDRRRYVRYDTSWSHSNPGTLTT
CHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCEEEE
TQIGDTISSSLSWTRSLRIGGVQWRSNFGLRPDLVTFPVPALSGSAVVPTSVDLYVNNVR
EECCHHHHHHHCEEEEEEECCEEEECCCCCCCCEEEECCCCCCCCEECCCEEEEEEECHH
QFSGNVASGPFVINSVPGITGAGNATVITRDALGRSIATSIPLYVDTRLLAPGLASYSAE
HHCCCCCCCCEEEECCCCCCCCCCEEEEEHHHCCCHHHHCCCEEEECEECCCCHHHCCCC
AGFLRRAYGIDSFDYARTPAASGSLRYGISERLTVEAHAEATAGVYNAGAGALARLGERG
CCHHHHHHCCCCCCCCCCCCCCCCEEECCCCEEEEEECCCCCCCEECCCCHHHHHHCCCC
VANASLALSAPGRTGVQAGIGYQYVTPRFSIDAQTLRAFGDYSDLGSREGVPVSRATDRV
CCCCEEEEECCCCCCCCCCCCEEEECCCCCCCHHHHHHHCCHHHCCCCCCCCCCCCCCEE
TVSFPFLRRQTLSFSYLGLKYPGVAASRIGSVAYLVNLGGLTSITFSGFQDLRQRDTRGF
EEEEHHHHHHCCCEEEEEEECCCCHHHHHCCEEEEEECCCCEEEEHHHHHHHHHCCCCCE
FVSLSIGLGGNTSVSLNAGRQNGDSTYTLSATRPPDYGGGVGWNVQAGANAGMRYAQGQL
EEEEEEECCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCHHHCCHH
QYLGRAGEVTLLAQSFDGHRNASVDVTGAIVLMNGQLMTARRVDDGFALVSTDTGRVPVL
HHHCCCCCEEEEEECCCCCCCCEEEEEEEEEEECCEEEEEEECCCCEEEEECCCCCCEEE
HQNRMIGETDRAGYLLVPDLNAYQSNRVAIDGTALPADARIADTTLDVVPQARSGVLAHF
ECCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCCCCEEECCHHHHCCCCCCCEEEEE
AVTRYSAASIALRAPDGTPLPPGLEVRHVETGQRTIVGYDGLTFVDGLVANNHLEITGGG
EEHEECEEEEEEECCCCCCCCCCCEEEEEECCCEEEEECCCHHHHHHHEECCEEEEECCC
RDCAVAFAYQRPDDGTLPRIGPLTCGPR
CCEEEEEEEECCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PTPTPAPASDALFLDVSLNGEPTHRIARFQQIDGRLYAASADLNDLGIATNDRTNDRTQ
CCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHCCEEEEEECCCCCCCEECCCCCCCCCC
EPSNVLVALDTLAGLRYDYDAGRQTLDLRVPDALRIPHTFDTRALAAAPPATSGRGFVLN
CCCCEEEEEEHHHCCEEECCCCCEEEEEECCCCEECCCCCCCCEEECCCCCCCCCEEEEE
YDAYAQTIAHAPLAVWSEARYFDPYGVFSSTGVAYLYDDRRRYVRYDTSWSHSNPGTLTT
CHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCEEEE
TQIGDTISSSLSWTRSLRIGGVQWRSNFGLRPDLVTFPVPALSGSAVVPTSVDLYVNNVR
EECCHHHHHHHCEEEEEEECCEEEECCCCCCCCEEEECCCCCCCCEECCCEEEEEEECHH
QFSGNVASGPFVINSVPGITGAGNATVITRDALGRSIATSIPLYVDTRLLAPGLASYSAE
HHCCCCCCCCEEEECCCCCCCCCCEEEEEHHHCCCHHHHCCCEEEECEECCCCHHHCCCC
AGFLRRAYGIDSFDYARTPAASGSLRYGISERLTVEAHAEATAGVYNAGAGALARLGERG
CCHHHHHHCCCCCCCCCCCCCCCCEEECCCCEEEEEECCCCCCCEECCCCHHHHHHCCCC
VANASLALSAPGRTGVQAGIGYQYVTPRFSIDAQTLRAFGDYSDLGSREGVPVSRATDRV
CCCCEEEEECCCCCCCCCCCCEEEECCCCCCCHHHHHHHCCHHHCCCCCCCCCCCCCCEE
TVSFPFLRRQTLSFSYLGLKYPGVAASRIGSVAYLVNLGGLTSITFSGFQDLRQRDTRGF
EEEEHHHHHHCCCEEEEEEECCCCHHHHHCCEEEEEECCCCEEEEHHHHHHHHHCCCCCE
FVSLSIGLGGNTSVSLNAGRQNGDSTYTLSATRPPDYGGGVGWNVQAGANAGMRYAQGQL
EEEEEEECCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCHHHCCHH
QYLGRAGEVTLLAQSFDGHRNASVDVTGAIVLMNGQLMTARRVDDGFALVSTDTGRVPVL
HHHCCCCCEEEEEECCCCCCCCEEEEEEEEEEECCEEEEEEECCCCEEEEECCCCCCEEE
HQNRMIGETDRAGYLLVPDLNAYQSNRVAIDGTALPADARIADTTLDVVPQARSGVLAHF
ECCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCCCCEEECCHHHHCCCCCCCEEEEE
AVTRYSAASIALRAPDGTPLPPGLEVRHVETGQRTIVGYDGLTFVDGLVANNHLEITGGG
EEHEECEEEEEEECCCCCCCCCCCEEEEEECCCEEEEECCCHHHHHHHEECCEEEEECCC
RDCAVAFAYQRPDDGTLPRIGPLTCGPR
CCEEEEEEEECCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2564179; 1713284 [H]